View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884-Insertion-8 (Length: 427)
Name: NF1884-Insertion-8
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Complemental strand, 11730792 - 11730383
Alignment:
| Q |
7 |
attgttcaagttaagtagttgatctacaagctctttcttctctttttcatgaaaccctcccaaatcaaatctagcagcaaatccagaaatgttgttagca |
106 |
Q |
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| T |
11730792 |
attgttcaagttaagtagttgatctacaagctctttcttctctttttcatgaaaccctcccaaatcaaatctagcagcaaatccagaaatgttgttagca |
11730693 |
T |
|
| Q |
107 |
accatgttagcaacatgactgccacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaaattctcgagatccttct |
206 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11730692 |
accatgttagcaacatggctgccacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaaattctcaagatccttct |
11730593 |
T |
|
| Q |
207 |
tcatctcaatttgcaaaccatcaagcacaattagagggtgtttaccatcatcaacagtggtggtagctgacttaactattgattcgacatcaaaggtctc |
306 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11730592 |
tcatctcattttgcaaaccatcaagcacaattagagggtgtttaccatcattaacagtggtggtagctgacttaactattgattcaacatcaaaggtctc |
11730493 |
T |
|
| Q |
307 |
gtagagaagatcgatccaaattggctgtagcccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaa |
406 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11730492 |
gtagagaagatcgatccaaattggctgtggcccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaa |
11730393 |
T |
|
| Q |
407 |
acaccaacaa |
416 |
Q |
| |
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|||||||||| |
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| T |
11730392 |
acaccaacaa |
11730383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 47 - 416
Target Start/End: Complemental strand, 11731184 - 11730827
Alignment:
| Q |
47 |
tctttttcatgaaaccctcccaaatcaaatctagcagcaaatccagaaatgttgttagcaaccatgttagcaacatgactgccacgtgtagtgatgagta |
146 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |
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| T |
11731184 |
tctttttcatcaaaccctttcaaatcaaatctagcagcaaatccagaaatgttgttagcaacttggtt------------gctacgtgtagtgatgagta |
11731097 |
T |
|
| Q |
147 |
ttgcacaaccggtaccacaagactcctttaatcgttgctgcaaattctcgagatccttcttcatctcaatttgcaaaccatcaagcacaattagagggtg |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| || |||| |||||||||| ||||| ||| |
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| T |
11731096 |
ttgcacaaccggtaccacaagactcctttaatcgttgctgcaacttctcgagatcattcttaatctcatttctcaaatcatcaagcacgattaggcagtg |
11730997 |
T |
|
| Q |
247 |
tttaccatcatcaacagtggtggtagctgacttaactattgattcgacatcaaaggtctcgtagagaagatcgatccaaattggctgtagcccaaaattt |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
11730996 |
tttaccatcatcaacagtggtggtagctgacttaactatggattccacatcaaaggtctcgtgtagaagatcgatccaaattggttgtagcccaaaattt |
11730897 |
T |
|
| Q |
347 |
gctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaa |
416 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| | ||||||||||| |
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| T |
11730896 |
gctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaa |
11730827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 11975630 - 11975687
Alignment:
| Q |
347 |
gctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctg |
404 |
Q |
| |
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||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||| |
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| T |
11975630 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctg |
11975687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 416
Target Start/End: Original strand, 11903300 - 11903378
Alignment:
| Q |
338 |
ccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaa |
416 |
Q |
| |
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||||||| ||||||||||| ||||| | ||||||||||| |||||||||||| || || ||||| | ||||||||||| |
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| T |
11903300 |
ccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaa |
11903378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 12038032 - 12037935
Alignment:
| Q |
319 |
gatccaaattggctgtagcccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaa |
416 |
Q |
| |
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|||||||||||| |||| ||||||||| || |||||||||||||| ||||| ||| | ||||||||||| || || ||||| | ||||||||||| |
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| T |
12038032 |
gatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaacaa |
12037935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 11827046 - 11826969
Alignment:
| Q |
339 |
caaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaa |
416 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||| ||| | ||||||||||| || || ||||| | ||||||||||| |
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|
| T |
11827046 |
caaaattcgctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaa |
11826969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 11859205 - 11859137
Alignment:
| Q |
348 |
ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaa |
416 |
Q |
| |
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|||||||||||||||| | ||||| ||||| ||||||||||| || || ||||| | ||||||||||| |
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| T |
11859205 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaa |
11859137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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