View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18840_high_4 (Length: 354)
Name: NF18840_high_4
Description: NF18840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18840_high_4 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 139 - 354
Target Start/End: Complemental strand, 50558296 - 50558081
Alignment:
| Q |
139 |
gatactgtgtttaaatcacaattttttaagcacacatgtttatgcatttgtcattttttgaccactgtaacaggtttgtgaaaaaagtcctcgtcttcgt |
238 |
Q |
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| T |
50558296 |
gatactgtgtttaaatcacaattttttaagcacacatgtttatgcatttgtcgttttttgaccactgtaacaggtttgtgaaaaaagtcctcgtcttcgt |
50558197 |
T |
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| Q |
239 |
gatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacgagatgtctgtggtcggatcctggagtcagaacgcta |
338 |
Q |
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| T |
50558196 |
gatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacgagatgtctgtggtcggatcctggagtcagaacgcta |
50558097 |
T |
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| Q |
339 |
ttcaaacaaccaatgc |
354 |
Q |
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| T |
50558096 |
ttcaaacaaccaatgc |
50558081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 204 - 348
Target Start/End: Complemental strand, 29770548 - 29770404
Alignment:
| Q |
204 |
tgtaacaggtttgtgaaaaaagtcctcgtcttcgtgatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacga |
303 |
Q |
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| T |
29770548 |
tgtaacaggtttgtcgaaatagtcctcgtatttgtgatacggaccacttatttcttgagctccctcttttggaagataagttgcaaaaatacatcaatga |
29770449 |
T |
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| Q |
304 |
gatgtctgtggtcggatcctggagtcagaacgctattcaaacaac |
348 |
Q |
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| T |
29770448 |
gatgtctgtggtgggatcatggagtcagaatgctattcaaacaac |
29770404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 50568381 - 50568231
Alignment:
| Q |
203 |
ctgtaacaggtttgtgaaaaaagtcctcgtcttcgtgatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacg |
302 |
Q |
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| T |
50568381 |
ctgtaacaggtttgtaaaaacagtccttttcttggtgatacagaccacttatttcttgagcttcctgtattgaaagataaattggagaaatacatcaaca |
50568282 |
T |
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| Q |
303 |
agatgtctgtggtcggatcctggagtcagaacgctattcaaacaaccaatgc |
354 |
Q |
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| T |
50568281 |
agatgtc-gtggacagatcatggagtcagaatgctatccaaattaccaatgc |
50568231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 50558433 - 50558347
Alignment:
| Q |
2 |
taggtgcaaggtagcaaccctatccctaaatttttgcgatacgtttctgtgatgtctgtacgattttcaatgaagacgatgttcctt |
88 |
Q |
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| T |
50558433 |
taggtgcaaggtagcaaccctctccctaaatttttgctctatgtttctgtgctgtatgtacgattttcattgtagtctatgttcctt |
50558347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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