View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18840_low_1 (Length: 419)
Name: NF18840_low_1
Description: NF18840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18840_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 10842789 - 10843025
Alignment:
| Q |
16 |
atgcaaaaacactaccaaaaatctcaaagctcaagtctcccaattggaccatgatttaagtcggatgtcagaagaacaaacttttgacaatgactttaac |
115 |
Q |
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| T |
10842789 |
atgcaaaaacactaccaaaaatctcaaagctcaagtctcccaattggaccatgatttaagtcggatgttagaagaacaaacttttgagaatgactttaac |
10842888 |
T |
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| Q |
116 |
cnnnnnnnnnnnnnnnnnnnnnnnctacaaggtcaagtaaagaaattgatgatttcttgagagtctctaaagagataaaaacccaaacaagttgaagann |
215 |
Q |
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| T |
10842889 |
caaaataaaaaagaaaacataaaactacaaggtcaagtaaagaaattgatgatttcttgagagtctctaaagaaagaaaaacccaaacaagttgaagatt |
10842988 |
T |
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| Q |
216 |
nnnnncttttaccctcattcttttcctatttacgatg |
252 |
Q |
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| T |
10842989 |
tttttcttttaccctcattcttttcctatttacgatg |
10843025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 260 - 416
Target Start/End: Original strand, 10843052 - 10843208
Alignment:
| Q |
260 |
ttctacccttcatatgcatcatcgccaccactgtatgcaaaatacacacccttagtctatagtgaaaaacataccagaaccactacttcaacctctaggt |
359 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
10843052 |
ttctatccttcatatgcatcatcatcaccactgtatgcaaaatacacacccttagtctatagtgaaaaatataccagaaccaatacttcaacctctaggt |
10843151 |
T |
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| Q |
360 |
ccaaagaaagaactgcccgtttaagtctatagtgaaaaagatgagtgatgagtacat |
416 |
Q |
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| T |
10843152 |
ctatagaaaaaactgcccgtttaagtctatagtgaaaaagatgagtgatgagtacat |
10843208 |
T |
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