View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18840_low_3 (Length: 391)
Name: NF18840_low_3
Description: NF18840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18840_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 128963 - 128602
Alignment:
| Q |
18 |
ctggttaatatggtttgactttaaagaactgttgttaatagttatgtggctctgttttaagtccacaatataaagctgtaagcatcttagttttatatct |
117 |
Q |
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| T |
128963 |
ctggttaatatggtttgactttaaagaaccgttgttaatagttatgtggctctgttttaagtccacaatataaagctgtaagcatcttagttttatatct |
128864 |
T |
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| Q |
118 |
taagttgtctaagtaaacagatttccatttgtaatttctaaacagaacaaaaatttgaagcccattgagttgcttgactgattcttaatggtaaattcaa |
217 |
Q |
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| T |
128863 |
taagttgtccaagtaaacagatttccatttgtaatttctaaacagaacaaaaatttgaagctcattgagttgcttgactgattcttaatggtaaattcaa |
128764 |
T |
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| Q |
218 |
actaaaacagaaacaggttcttggatatgatgaagttgaagaggaatgaagattgacgatattcagatactgaaatgataagaattagtaattttgagtt |
317 |
Q |
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| T |
128763 |
actaaaacaggaacaggttcttggatatgatgaagctgaagaggaatgaagattgacgatattcagagactgaaatgataagaattagtaattttgagta |
128664 |
T |
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| Q |
318 |
gtattgtgaaattgtaatgggaatgatgaagttgaagaggagagaagacctgatattcttcg |
379 |
Q |
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| T |
128663 |
gtattgtgaaattgtaatgggaatgatgaagttgaagaggagagaagacctgatattattcg |
128602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 44773501 - 44773357
Alignment:
| Q |
18 |
ctggttaatatggtttgactttaaagaactgttgttaatagttatgtggctctgttttaagtccacaatataaagctgtaagcatcttagttttatatct |
117 |
Q |
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| T |
44773501 |
ctggttaatatggtttgactttaaataactgttgttaatagttatgtggctctgttttaagtccacaatacaaagctgtaagcatcttagaattctatat |
44773402 |
T |
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| Q |
118 |
taagttgtctaagtaaacagatttccatttgtaatttctaaacag |
162 |
Q |
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| T |
44773401 |
taagttgtctaagtaaacagatttccatttgtaatttctaaacag |
44773357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 44772139 - 44772058
Alignment:
| Q |
159 |
acagaacaaaaatttgaagcccattgagttgcttgactgattcttaatggtaaatt-caaactaaaacagaaacaggttctt |
239 |
Q |
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| T |
44772139 |
acagaactaaaatttgaagcccattgagttgcttgactgattcttaacggtaaattacaaactaaaacaggaacaagttctt |
44772058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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