View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18841_high_11 (Length: 224)
Name: NF18841_high_11
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18841_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22458193 - 22457986
Alignment:
| Q |
1 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
22458193 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaaggatttgtgaaagatgatatggtaaaaaca |
22458094 |
T |
|
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458093 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
22457994 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22457993 |
ttcatgat |
22457986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22481174 - 22480967
Alignment:
| Q |
1 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
22481174 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaaggatttgtgaaagatgatatggtaaaaaca |
22481075 |
T |
|
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481074 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
22480975 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22480974 |
ttcatgat |
22480967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22436335 - 22436128
Alignment:
| Q |
1 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | |||| | ||||| ||| |||||||| |||||||| ||||||||||| || || | || ||| |
|
|
| T |
22436335 |
gtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcgtgaaagaagagaggggaaggaca |
22436236 |
T |
|
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
||||||||| ||||| | |||||||||| ||| ||| ||| |||| |||||||||| ||||||||||| |||||||||||||||| |||||||||| ||| |
|
|
| T |
22436235 |
ttggaagatattgcaaaaggatatttaatagagttggtcaatagaagtttggtgcatgtagtttcaataagtattgatggaagagtaaaaagttgtcgtg |
22436136 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22436135 |
ttcatgat |
22436128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22635210 - 22635003
Alignment:
| Q |
1 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | |||| | ||||| ||| |||||||| |||||||| ||||||||||| || || | || ||| |
|
|
| T |
22635210 |
gtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcgtgaaagaagacaggggaaggaca |
22635111 |
T |
|
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
|| ||||| |||||||| ||||||||| ||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| | | |
|
|
| T |
22635110 |
tttgaagaggttgcagaaggatatttagtagagttgatccatagaagtttggtgcaagtagtttcaactagtattgatggaagagtaaaaagttgccgcg |
22635011 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22635010 |
ttcatgat |
22635003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22467655 - 22467448
Alignment:
| Q |
1 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | |||| | |||| ||| |||||||| |||||||| || ||||| || || || | | ||| |
|
|
| T |
22467655 |
gtattttggattatatcctgaagactatatagttcattcaaagacgttgactcgccaatggattgctgaagggtttgtgaaggaagacagggggaggaca |
22467556 |
T |
|
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
|||||||| ||||| || |||||||||| ||| |||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |
|
|
| T |
22467555 |
ttggaagaggttgctgaaggatatttaatagagttgatccatagaagtttggtgcaagtagtttcaataagtattgatggaagagtaaaaagttgtcgtg |
22467456 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22467455 |
ttcatgat |
22467448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22357706 - 22357499
Alignment:
| Q |
1 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||| | || ||||| | |||| | ||||| ||| |||||||| |||||||| || |||||| | || | | || ||| |
|
|
| T |
22357706 |
gtattttggattatatcctgaagactataaagttcattcaaagacattgactcgacaatggattgctgaagggtttgtgaaacaatatggggaaagaacg |
22357607 |
T |
|
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| || || |||| ||||||||||||||| |||||| |||||||||||||||| |||| ||||| ||| |
|
|
| T |
22357606 |
atggaagaggttgcagaaggatatttaaaagagttaatacatagaagtttggtgcaagtagattcaatcagtattgatggaagagtaaaacgttgtcgtg |
22357507 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22357506 |
ttcatgat |
22357499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22620588 - 22620381
Alignment:
| Q |
1 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca |
100 |
Q |
| |
|
|||||||||||||||||| |||| || || |||| | |||| | |||||||||||||||||| |||||||| || || ||||| || || | || || |
|
|
| T |
22620588 |
gtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaatact |
22620489 |
T |
|
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| |||||| |||| |||||||||||||| |||| | || || ||||||| | ||||||||||||| | |
|
|
| T |
22620488 |
ttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaaaaagttgttgcg |
22620389 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22620388 |
ttcatgat |
22620381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22630145 - 22629940
Alignment:
| Q |
1 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca |
100 |
Q |
| |
|
|||||||||||| |||||||||| | |||||||| | |||| | |||| ||| |||||||| |||||||| || |||||||| | | | || |||| |
|
|
| T |
22630145 |
gtattttggattctatcctgaagactatatagttcgttcaaaggtgttgactcgccaatggatcgctgaagggtttgtgaaagaagtcaagggaagaaca |
22630046 |
T |
|
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
|||||||| |||| ||| |||||||||| ||| ||| || ||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| |
|
|
| T |
22630045 |
ttggaagaggttggagaaggatatttaatagagttggtccgtagaagtttggtgcaagtagtttcaacaagtat--atggaagagtaaaaagttgtcgtg |
22629948 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
| |||||| |
|
|
| T |
22629947 |
tacatgat |
22629940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22430874 - 22430667
Alignment:
| Q |
1 |
gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca |
100 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||| | |||| | ||| | | | |||||||| |||||||| || |||||||| | | | || ||| |
|
|
| T |
22430874 |
gtattttggattatatcctaaagactatatagtttattcaaagacattaacttgtcaatggattgctgaagggtttgtgaaagaaaaaacgggaaggaca |
22430775 |
T |
|
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
||| |||| |||||||| |||||||||| ||| |||||| |||| ||||||||||||||| |||||| |||||||||||||||| || ||||||| ||| |
|
|
| T |
22430774 |
ttgaaagaggttgcagaaggatatttaatagagttgatccatagaagtttggtgcaagtagattcaataagtattgatggaagagtaagaagttgtcgtg |
22430675 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22430674 |
ttcatgat |
22430667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 22442401 - 22442239
Alignment:
| Q |
46 |
attgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtaga |
145 |
Q |
| |
|
||||| ||| |||||||| |||||||| || |||||||| || | | || ||||||||| | |||||||| |||||||||| || || ||| ||||| |
|
|
| T |
22442401 |
attgactcgtcaatggatagctgaagggtttgtgaaagaatatggggaaaggacattggaaaaggttgcagaaggatatttaaaagtgttaatctgtaga |
22442302 |
T |
|
| Q |
146 |
ggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22442301 |
agtttggtgcaagtagtttcaaccagtattgatggaagagtaaaaagttgccgtgttcatgat |
22442239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 37930467 - 37930357
Alignment:
| Q |
98 |
acattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgtt |
197 |
Q |
| |
|
||||||||| | ||||| || |||||||||| ||| || ||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
37930467 |
acattggaaaaggttgcggaaggatatttaaaagagttaatctgtagaagtttggtgcaagtagtttcaaccggtattgatggaagagtaaaaagttgtc |
37930368 |
T |
|
| Q |
198 |
gtgttcatgat |
208 |
Q |
| |
|
||||||||||| |
|
|
| T |
37930367 |
gtgttcatgat |
37930357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 22367624 - 22367421
Alignment:
| Q |
5 |
tttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattgg |
104 |
Q |
| |
|
||||||||||||||||||| | | |||| | |||||||||||| ||| |||||||| |||||||| || |||||||| || || | || ||||||| |
|
|
| T |
22367624 |
tttggattatatcctgaagactcaaatgttcgttcaaatatattgactcgtcaatggattgctgaagggtttgtgaaagaagaaaggggaatgacattgg |
22367525 |
T |
|
| Q |
105 |
aagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttca |
204 |
Q |
| |
|
|||| |||||||| ||| |||||| ||| |||||| ||||| ||||||||| ||||| | || | |||||||||||||| | | ||||| ||||||| |
|
|
| T |
22367524 |
aagaggttgcagaaggacatttaatagagttgatccgtagaagtttggtgcgagtagatgggatcactattgatggaagagtagacagttgccgtgttca |
22367425 |
T |
|
| Q |
205 |
tgat |
208 |
Q |
| |
|
|||| |
|
|
| T |
22367424 |
tgat |
22367421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 22353415 - 22353313
Alignment:
| Q |
102 |
tggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgt |
201 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| || ||| |||| ||||||||||||||| |||| | |||||||||||||||| |||||||||| |||| |
|
|
| T |
22353415 |
tggaagaggttgcagaaggatatttaaaagagttaatccatagaagtttggtgcaagtagattcagtcagtattgatggaagagtaaaaagttgtcgtgt |
22353316 |
T |
|
| Q |
202 |
tca |
204 |
Q |
| |
|
||| |
|
|
| T |
22353315 |
tca |
22353313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 22656711 - 22656551
Alignment:
| Q |
48 |
tgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagagg |
147 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||||||| || || | ||||| |||||||| |||||||| |||||||||||||| ||||| | || | |
|
|
| T |
22656711 |
tgatacggcaatggatagctgaaggttttgtgaaagaagaaagggggaaaactttggaagaagttgcagaaggatatttaacagagttgattcgccgatg |
22656612 |
T |
|
| Q |
148 |
tttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat |
208 |
Q |
| |
|
|||||| |||||| ||| |||| ||||| |||| | | |||||||||||||| |||||| |
|
|
| T |
22656611 |
tttggtacaagtatcctcagttagaattgacggaaaaactaaaagttgttgtgtccatgat |
22656551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 30988952 - 30988790
Alignment:
| Q |
46 |
attgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtaga |
145 |
Q |
| |
|
||||||||| |||||| | |||||||| |||||||| || || || | || || |||||||| |||||||| |||||||||||||| |||||| |||| |
|
|
| T |
30988952 |
attgattcgacaatgggtagctgaagggttcgtgaaggaggaaagagggaagactttggaagacgttgcagaaggatatttaacagagttgatccataga |
30988853 |
T |
|
| Q |
146 |
ggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat |
208 |
Q |
| |
|
| |||||||||||| ||| |||| ||||||| | ||| ||| ||||| ||||||||||| |
|
|
| T |
30988852 |
agcttggtgcaagtatcttcggttagagttgatggtaaagctaaaggttgtcgtgttcatgat |
30988790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 22647776 - 22647669
Alignment:
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
|||||||| |||||||| |||||||||| || |||||| |||| ||||||| |||||| |||| |||| |||||||||| | | |||||||| |||| |
|
|
| T |
22647776 |
ttggaagaagttgcagaacgatatttaactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgctgtg |
22647677 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
22647676 |
ttcatgat |
22647669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 21946445 - 21946605
Alignment:
| Q |
48 |
tgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagagg |
147 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||| || || || | || || |||||||| || ||||| |||||||||||||| |||||| |||| | |
|
|
| T |
21946445 |
tgattcgacaatggatagctgaagggtttgtgaaggaggaaagagggaagactttggaagaagtggcagaaggatatttaacagagttgatccatagaag |
21946544 |
T |
|
| Q |
148 |
tttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat |
208 |
Q |
| |
|
|||| |||||| |||| |||| |||||||| | ||| ||| ||||| ||||||||||| |
|
|
| T |
21946545 |
cctggttcaagtatcttcacttagaattgatggtaaagctaaaggttgtcgtgttcatgat |
21946605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 22628182 - 22628096
Alignment:
| Q |
46 |
attgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacaga |
132 |
Q |
| |
|
||||||||| |||| ||| ||||||||||| |||||||| || || | |||||| || ||||| || |||| |||||||||||||| |
|
|
| T |
22628182 |
attgattcgacaattgatagctgaaggatttgtgaaagaagaaaggggaaaaactttcgaagaagtcacagaaggatatttaacaga |
22628096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 2305131 - 2304971
Alignment:
| Q |
48 |
tgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagagg |
147 |
Q |
| |
|
||||||| || ||||| |||||||| || ||||| || || || | || || |||||||| |||||||| ||||||||| |||| ||||| || || | |
|
|
| T |
2305131 |
tgattcgacagtggatagctgaagggtttgtgaaggaggaaagtgggaagactttggaagaagttgcagaaggatatttatcagagttgattcgtcgaag |
2305032 |
T |
|
| Q |
148 |
tttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat |
208 |
Q |
| |
|
||||||||||||| ||| |||| |||||||||| | | ||||||||||||||||||||| |
|
|
| T |
2305031 |
tttggtgcaagtatcctcagttagcattgatggaaaatctaaaagttgttgtgttcatgat |
2304971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 34990046 - 34990198
Alignment:
| Q |
56 |
caatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgc |
155 |
Q |
| |
|
|||||||| |||||||| || |||||||| || || | || || |||||||| |||| ||| ||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
34990046 |
caatggatagctgaagggtttgtgaaagaggaaagtgggaagactttggaagaagttgaagaaagatatttaacagagttgattcgtagaagtttggtgc |
34990145 |
T |
|
| Q |
156 |
aagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat |
208 |
Q |
| |
|
||||| ||| |||| |||||||||| | | | ||||||||||||||||||| |
|
|
| T |
34990146 |
aagtatcctcagttagcattgatggaaaaactagaagttgttgtgttcatgat |
34990198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 34976245 - 34976352
Alignment:
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
|||||||| |||||| | |||||||||||||| ||||| || || |||||||||||||| ||| |||| |||||||||| | ||||||||||||| |
|
|
| T |
34976245 |
ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg |
34976344 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
34976345 |
ttcatgat |
34976352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 34983356 - 34983463
Alignment:
| Q |
101 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
200 |
Q |
| |
|
|||||||| |||||| | |||||||||||||| ||||| || || |||||||||||||| ||| |||| |||||||||| | ||||||||||||| |
|
|
| T |
34983356 |
ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg |
34983455 |
T |
|
| Q |
201 |
ttcatgat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
34983456 |
ttcatgat |
34983463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 40580766 - 40580911
Alignment:
| Q |
59 |
tggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaag |
158 |
Q |
| |
|
||||| |||||||| || ||||| || || || | ||| || |||||||| ||||| || | ||||||||| || ||||| || | |||||||||||| |
|
|
| T |
40580766 |
tggatagctgaagggtttgtgaaggaggaaagtggaaagactttggaagaagttgctgaagtatatttaactgagttgattcgtcgtagtttggtgcaag |
40580865 |
T |
|
| Q |
159 |
tagtttcaattagtattgatggaagagcaaaaagttgttgtgttca |
204 |
Q |
| |
|
|| |||||||| |||||||||| | | |||||||||| |||||| |
|
|
| T |
40580866 |
tatcctcaattagaattgatggaaaaactaaaagttgttttgttca |
40580911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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