View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18841_low_11 (Length: 224)

Name: NF18841_low_11
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18841_low_11
NF18841_low_11
[»] chr3 (18 HSPs)
chr3 (1-208)||(22457986-22458193)
chr3 (1-208)||(22480967-22481174)
chr3 (1-208)||(22436128-22436335)
chr3 (1-208)||(22635003-22635210)
chr3 (1-208)||(22467448-22467655)
chr3 (1-208)||(22357499-22357706)
chr3 (1-208)||(22620381-22620588)
chr3 (1-208)||(22629940-22630145)
chr3 (1-208)||(22430667-22430874)
chr3 (46-208)||(22442239-22442401)
chr3 (98-208)||(37930357-37930467)
chr3 (5-208)||(22367421-22367624)
chr3 (102-204)||(22353313-22353415)
chr3 (48-208)||(22656551-22656711)
chr3 (46-208)||(30988790-30988952)
chr3 (101-208)||(22647669-22647776)
chr3 (48-208)||(21946445-21946605)
chr3 (46-132)||(22628096-22628182)
[»] chr1 (4 HSPs)
chr1 (48-208)||(2304971-2305131)
chr1 (56-208)||(34990046-34990198)
chr1 (101-208)||(34976245-34976352)
chr1 (101-208)||(34983356-34983463)
[»] chr5 (1 HSPs)
chr5 (59-204)||(40580766-40580911)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22458193 - 22457986
Alignment:
Q  1 gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  22458193 gtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaaggatttgtgaaagatgatatggtaaaaaca 22458094  T
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458093 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 22457994  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  22457993 ttcatgat 22457986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22481174 - 22480967
Alignment:
Q  1 gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  22481174 gtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaaggatttgtgaaagatgatatggtaaaaaca 22481075  T
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481074 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 22480975  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  22480974 ttcatgat 22480967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22436335 - 22436128
Alignment:
Q  1 gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca 100  Q
    |||||||||||||||||||||||  | |||||||| | |||| | ||||| ||| |||||||| |||||||| ||||||||||| || || | ||  |||    
T  22436335 gtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcgtgaaagaagagaggggaaggaca 22436236  T
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    ||||||||| ||||| | |||||||||| ||| ||| ||| |||| |||||||||| ||||||||||| |||||||||||||||| |||||||||| |||    
T  22436235 ttggaagatattgcaaaaggatatttaatagagttggtcaatagaagtttggtgcatgtagtttcaataagtattgatggaagagtaaaaagttgtcgtg 22436136  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  22436135 ttcatgat 22436128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22635210 - 22635003
Alignment:
Q  1 gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca 100  Q
    |||||||||||||||||||||||  | |||||||| | |||| | ||||| ||| |||||||| |||||||| ||||||||||| || || | ||  |||    
T  22635210 gtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcgtgaaagaagacaggggaaggaca 22635111  T
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    || ||||| |||||||| |||||||||  ||| ||||||  |||| ||||||||||||||||||||| ||||||||||||||||| |||||||||  | |    
T  22635110 tttgaagaggttgcagaaggatatttagtagagttgatccatagaagtttggtgcaagtagtttcaactagtattgatggaagagtaaaaagttgccgcg 22635011  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  22635010 ttcatgat 22635003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22467655 - 22467448
Alignment:
Q  1 gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca 100  Q
    |||||||||||||||||||||||  | |||||||| | |||| |  |||| ||| |||||||| |||||||| || ||||| || || || |  |  |||    
T  22467655 gtattttggattatatcctgaagactatatagttcattcaaagacgttgactcgccaatggattgctgaagggtttgtgaaggaagacagggggaggaca 22467556  T
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    |||||||| ||||| || |||||||||| ||| ||||||  |||| |||||||||||||||||||||| |||||||||||||||| |||||||||| |||    
T  22467555 ttggaagaggttgctgaaggatatttaatagagttgatccatagaagtttggtgcaagtagtttcaataagtattgatggaagagtaaaaagttgtcgtg 22467456  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  22467455 ttcatgat 22467448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22357706 - 22357499
Alignment:
Q  1 gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca 100  Q
    |||||||||||||||||||||||  | || ||||| | |||| | ||||| ||| |||||||| |||||||| || |||||| |  || | | || |||     
T  22357706 gtattttggattatatcctgaagactataaagttcattcaaagacattgactcgacaatggattgctgaagggtttgtgaaacaatatggggaaagaacg 22357607  T
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
     ||||||| |||||||| |||||||||| ||| || ||   |||| ||||||||||||||| |||||| |||||||||||||||| |||| ||||| |||    
T  22357606 atggaagaggttgcagaaggatatttaaaagagttaatacatagaagtttggtgcaagtagattcaatcagtattgatggaagagtaaaacgttgtcgtg 22357507  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  22357506 ttcatgat 22357499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22620588 - 22620381
Alignment:
Q  1 gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca 100  Q
    |||||||||||||||||| |||| || || ||||  | |||| | |||||||||||||||||| |||||||| || || ||||| || || |  || ||     
T  22620588 gtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagggggaatact 22620489  T
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    |||||||| |||||||| ||||| |||||||| ||||||  |||| ||||||||||||||  |||| | || || ||||||| | ||||||||||||| |    
T  22620488 ttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaaaaagttgttgcg 22620389  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  22620388 ttcatgat 22620381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22630145 - 22629940
Alignment:
Q  1 gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca 100  Q
    |||||||||||| ||||||||||  | |||||||| | ||||  | |||| ||| |||||||| |||||||| || |||||||| |  |  | || ||||    
T  22630145 gtattttggattctatcctgaagactatatagttcgttcaaaggtgttgactcgccaatggatcgctgaagggtttgtgaaagaagtcaagggaagaaca 22630046  T
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    |||||||| |||| ||| |||||||||| ||| ||| || ||||| |||||||||||||||||||||  |||||  ||||||||| |||||||||| |||    
T  22630045 ttggaagaggttggagaaggatatttaatagagttggtccgtagaagtttggtgcaagtagtttcaacaagtat--atggaagagtaaaaagttgtcgtg 22629948  T
Q  201 ttcatgat 208  Q
    | ||||||    
T  22629947 tacatgat 22629940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 22430874 - 22430667
Alignment:
Q  1 gtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaaca 100  Q
    ||||||||||||||||||| |||  | |||||||  | |||| | ||| | | | |||||||| |||||||| || ||||||||  | |  | ||  |||    
T  22430874 gtattttggattatatcctaaagactatatagtttattcaaagacattaacttgtcaatggattgctgaagggtttgtgaaagaaaaaacgggaaggaca 22430775  T
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    ||| |||| |||||||| |||||||||| ||| ||||||  |||| ||||||||||||||| |||||| |||||||||||||||| || ||||||| |||    
T  22430774 ttgaaagaggttgcagaaggatatttaatagagttgatccatagaagtttggtgcaagtagattcaataagtattgatggaagagtaagaagttgtcgtg 22430675  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  22430674 ttcatgat 22430667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 22442401 - 22442239
Alignment:
Q  46 attgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtaga 145  Q
    ||||| ||| |||||||| |||||||| || ||||||||  || | | ||  ||||||||| | |||||||| |||||||||| ||  || ||| |||||    
T  22442401 attgactcgtcaatggatagctgaagggtttgtgaaagaatatggggaaaggacattggaaaaggttgcagaaggatatttaaaagtgttaatctgtaga 22442302  T
Q  146 ggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat 208  Q
     |||||||||||||||||||||  |||||||||||||||| |||||||||  |||||||||||    
T  22442301 agtttggtgcaagtagtttcaaccagtattgatggaagagtaaaaagttgccgtgttcatgat 22442239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 37930467 - 37930357
Alignment:
Q  98 acattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgtt 197  Q
    ||||||||| | ||||| || |||||||||| ||| || ||| ||||| |||||||||||||||||||||   ||||||||||||||| ||||||||||     
T  37930467 acattggaaaaggttgcggaaggatatttaaaagagttaatctgtagaagtttggtgcaagtagtttcaaccggtattgatggaagagtaaaaagttgtc 37930368  T
Q  198 gtgttcatgat 208  Q
    |||||||||||    
T  37930367 gtgttcatgat 37930357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 22367624 - 22367421
Alignment:
Q  5 tttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattgg 104  Q
    |||||||||||||||||||  |  |  |||| | |||||||||||| ||| |||||||| |||||||| || |||||||| || || | ||  |||||||    
T  22367624 tttggattatatcctgaagactcaaatgttcgttcaaatatattgactcgtcaatggattgctgaagggtttgtgaaagaagaaaggggaatgacattgg 22367525  T
Q  105 aagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttca 204  Q
    |||| |||||||| ||| |||||| ||| |||||| ||||| ||||||||| ||||| |   || | |||||||||||||| | | |||||  |||||||    
T  22367524 aagaggttgcagaaggacatttaatagagttgatccgtagaagtttggtgcgagtagatgggatcactattgatggaagagtagacagttgccgtgttca 22367425  T
Q  205 tgat 208  Q
    ||||    
T  22367424 tgat 22367421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 22353415 - 22353313
Alignment:
Q  102 tggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgt 201  Q
    ||||||| |||||||| |||||||||| ||| || |||  |||| ||||||||||||||| |||| | |||||||||||||||| |||||||||| ||||    
T  22353415 tggaagaggttgcagaaggatatttaaaagagttaatccatagaagtttggtgcaagtagattcagtcagtattgatggaagagtaaaaagttgtcgtgt 22353316  T
Q  202 tca 204  Q
    |||    
T  22353315 tca 22353313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 22656711 - 22656551
Alignment:
Q  48 tgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagagg 147  Q
    |||| ||||||||||| |||||||| || |||||||| || || |  ||||| |||||||| |||||||| |||||||||||||| |||||  |  || |    
T  22656711 tgatacggcaatggatagctgaaggttttgtgaaagaagaaagggggaaaactttggaagaagttgcagaaggatatttaacagagttgattcgccgatg 22656612  T
Q  148 tttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat 208  Q
    |||||| ||||||   ||| |||| ||||| |||| | | |||||||||||||| ||||||    
T  22656611 tttggtacaagtatcctcagttagaattgacggaaaaactaaaagttgttgtgtccatgat 22656551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 30988952 - 30988790
Alignment:
Q  46 attgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtaga 145  Q
    ||||||||| |||||| | |||||||| |||||||| || || || |  || || |||||||| |||||||| |||||||||||||| ||||||  ||||    
T  30988952 attgattcgacaatgggtagctgaagggttcgtgaaggaggaaagagggaagactttggaagacgttgcagaaggatatttaacagagttgatccataga 30988853  T
Q  146 ggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat 208  Q
     | ||||||||||||  |||  ||||  ||||||| | ||| ||| ||||| |||||||||||    
T  30988852 agcttggtgcaagtatcttcggttagagttgatggtaaagctaaaggttgtcgtgttcatgat 30988790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 22647776 - 22647669
Alignment:
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    |||||||| ||||||||  |||||||||| || ||||||  |||| ||||||| ||||||  |||| |||| |||||||||| | | |||||||| ||||    
T  22647776 ttggaagaagttgcagaacgatatttaactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgctgtg 22647677  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  22647676 ttcatgat 22647669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 21946445 - 21946605
Alignment:
Q  48 tgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagagg 147  Q
    ||||||| |||||||| |||||||| || ||||| || || || |  || || |||||||| || ||||| |||||||||||||| ||||||  |||| |    
T  21946445 tgattcgacaatggatagctgaagggtttgtgaaggaggaaagagggaagactttggaagaagtggcagaaggatatttaacagagttgatccatagaag 21946544  T
Q  148 tttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat 208  Q
      |||| ||||||  |||| |||| |||||||| | ||| ||| ||||| |||||||||||    
T  21946545 cctggttcaagtatcttcacttagaattgatggtaaagctaaaggttgtcgtgttcatgat 21946605  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 22628182 - 22628096
Alignment:
Q  46 attgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacaga 132  Q
    ||||||||| |||| ||| ||||||||||| |||||||| || || | |||||| || ||||| ||  |||| ||||||||||||||    
T  22628182 attgattcgacaattgatagctgaaggatttgtgaaagaagaaaggggaaaaactttcgaagaagtcacagaaggatatttaacaga 22628096  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 2305131 - 2304971
Alignment:
Q  48 tgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagagg 147  Q
    ||||||| || ||||| |||||||| || ||||| || || || |  || || |||||||| |||||||| ||||||||| |||| |||||  || || |    
T  2305131 tgattcgacagtggatagctgaagggtttgtgaaggaggaaagtgggaagactttggaagaagttgcagaaggatatttatcagagttgattcgtcgaag 2305032  T
Q  148 tttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat 208  Q
    |||||||||||||   ||| |||| |||||||||| | | |||||||||||||||||||||    
T  2305031 tttggtgcaagtatcctcagttagcattgatggaaaatctaaaagttgttgtgttcatgat 2304971  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 34990046 - 34990198
Alignment:
Q  56 caatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgc 155  Q
    |||||||| |||||||| || |||||||| || || |  || || |||||||| |||| |||  ||||||||||||| |||||  ||||| |||||||||    
T  34990046 caatggatagctgaagggtttgtgaaagaggaaagtgggaagactttggaagaagttgaagaaagatatttaacagagttgattcgtagaagtttggtgc 34990145  T
Q  156 aagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgat 208  Q
    |||||   ||| |||| |||||||||| | | | |||||||||||||||||||    
T  34990146 aagtatcctcagttagcattgatggaaaaactagaagttgttgtgttcatgat 34990198  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 34976245 - 34976352
Alignment:
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    |||||||| |||||| | |||||||||||||| |||||  || || ||||||||||||||   ||| |||| ||||||||||   | |||||||||||||    
T  34976245 ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg 34976344  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  34976345 ttcatgat 34976352  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 34983356 - 34983463
Alignment:
Q  101 ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg 200  Q
    |||||||| |||||| | |||||||||||||| |||||  || || ||||||||||||||   ||| |||| ||||||||||   | |||||||||||||    
T  34983356 ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg 34983455  T
Q  201 ttcatgat 208  Q
    ||||||||    
T  34983456 ttcatgat 34983463  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 40580766 - 40580911
Alignment:
Q  59 tggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaag 158  Q
    ||||| |||||||| || ||||| || || || | ||| || |||||||| ||||| || | ||||||||| || |||||  || |  ||||||||||||    
T  40580766 tggatagctgaagggtttgtgaaggaggaaagtggaaagactttggaagaagttgctgaagtatatttaactgagttgattcgtcgtagtttggtgcaag 40580865  T
Q  159 tagtttcaattagtattgatggaagagcaaaaagttgttgtgttca 204  Q
    ||   |||||||| |||||||||| | | |||||||||| ||||||    
T  40580866 tatcctcaattagaattgatggaaaaactaaaagttgttttgttca 40580911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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