View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18841_low_12 (Length: 224)
Name: NF18841_low_12
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18841_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 18840372 - 18840587
Alignment:
| Q |
1 |
aaagaaattataatgcataattcagatcagtcgaagccagacatgcgttgaaggcattataaatataagcattctaccctatttccaaaatataaggaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18840372 |
aaagaaattataatgcataattcagatcagtcgaagccagacatgtgttgaaggcattataaatataagcattctaccctatttccaaaatataaggaat |
18840471 |
T |
|
| Q |
101 |
ggagtcggatgtactagcctgctccattgagatgcctaaagtctcaaaaaccttctgttgtatgccgcgtttatagatactcaaactcccccgaccaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
18840472 |
ggagtcggatgtactagcctgctccattgagatgcctaaagtctcaaaaaccttctgttgtatgccgcgtttatagattctcaaactccccctaccaatc |
18840571 |
T |
|
| Q |
201 |
tgacataaagtataat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18840572 |
tgacataaagtataat |
18840587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 18851543 - 18851758
Alignment:
| Q |
1 |
aaagaaattataatgcataattcagatcagtcgaagccagacatgcgttgaaggcattataaatataagcattctaccctatttccaaaatataaggaat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18851543 |
aaagaaattataatgcataattctgatcagtcgaagccagacatgcattgaaggcattataaatataagcattctaccctatttccaaaatataaggaat |
18851642 |
T |
|
| Q |
101 |
ggagtcggatgtactagcctgctccattgagatgcctaaagtctcaaaaaccttctgttgtatgccgcgtttatagatactcaaactcccccgaccaatc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| || ||||||||||||| ||||||| |
|
|
| T |
18851643 |
ggagtcggatgtacttgcctgctccattgagatgcctagagtctcaaaaaccttttgttgtatgtcgcgtttataaattctcaaactccccccaccaatc |
18851742 |
T |
|
| Q |
201 |
tgacataaagtataat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18851743 |
tgacataaagtataat |
18851758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 50012807 - 50012917
Alignment:
| Q |
95 |
aggaatggagtcggatgtactagcctgctccattgagatgcctaaagtctcaaaaaccttctgttgtatgccgcgtttatagatactcaaactcccccga |
194 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||| || ||||||||||||| | |
|
|
| T |
50012807 |
aggaatggagtcgcatgtactagcctgctccattgagatgcctacagtctccaaaaccttttgttgtatgtcgcgtttataaattctcaaactcccccca |
50012906 |
T |
|
| Q |
195 |
ccaatctgaca |
205 |
Q |
| |
|
||||||||||| |
|
|
| T |
50012907 |
ccaatctgaca |
50012917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 51297810 - 51297923
Alignment:
| Q |
103 |
agtcggatgtactagcctgctccattgagatgcctaaagtctcaaaaaccttctgttgtatgccgcgtttatagatactcaaactcccccgaccaatctg |
202 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
51297810 |
agtcgcatgtactagcctgctccattgagatgcctacagtctccaaaaccttttgttgtatgtcgcgtttataaattctcaaactccccccaccaatctg |
51297909 |
T |
|
| Q |
203 |
acataaagtataat |
216 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
51297910 |
acataaagtataat |
51297923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 51296454 - 51296548
Alignment:
| Q |
1 |
aaagaaattataatgcataattcagatcagtcgaagccagacatgcgttgaaggcattataaatataagcattctaccctatttccaaaatataagga |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
51296454 |
aaagaatttataatgcataattcagatcagtcgaagccaggcatgccttgaaggc---ataaatataagcattctacgccatttccaaaatataagga |
51296548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 44109879 - 44109989
Alignment:
| Q |
95 |
aggaatggagtcggatgtactagcctgctccattgagatgcctaaagtctcaaaaaccttctgttgtatgccgcgtttatagatactcaaactcccccga |
194 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||| || ||||||||||||| |
|
|
| T |
44109879 |
aggaatggagtcgcatgtactagcctgctccattgagatgcctacagtctccaaaaccttttgttgtatgtcgcgtttataaattctcaaactcccccct |
44109978 |
T |
|
| Q |
195 |
ccaatctgaca |
205 |
Q |
| |
|
||||||||||| |
|
|
| T |
44109979 |
ccaatctgaca |
44109989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University