View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18841_low_13 (Length: 216)
Name: NF18841_low_13
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18841_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 4903513 - 4903329
Alignment:
| Q |
17 |
cactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaa |
114 |
Q |
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| T |
4903513 |
cactttcgacggtgccgggctcttccaaatatgcgagaaaaccttcctcgggagaccatcaagatcttcctcccttatcatcaatgtttccaatttagaa |
4903414 |
T |
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| Q |
115 |
tacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
199 |
Q |
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| T |
4903413 |
tacattgattttaccgaaaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
4903329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 1556905 - 1556828
Alignment:
| Q |
99 |
tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctc |
176 |
Q |
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| T |
1556905 |
tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcctcctc |
1556828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 22154020 - 22154207
Alignment:
| Q |
14 |
catcactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaattta |
111 |
Q |
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| T |
22154020 |
catcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaattta |
22154119 |
T |
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| Q |
112 |
gaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
199 |
Q |
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| T |
22154120 |
gaataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattca |
22154207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 22209935 - 22210122
Alignment:
| Q |
14 |
catcactttcgacgg--ccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaattta |
111 |
Q |
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| T |
22209935 |
catcacttccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaattta |
22210034 |
T |
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| Q |
112 |
gaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattca |
199 |
Q |
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| T |
22210035 |
gaataaatttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattca |
22210122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 34821782 - 34821847
Alignment:
| Q |
93 |
catcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctcca |
158 |
Q |
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| T |
34821782 |
catcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacctcca |
34821847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 53561944 - 53561813
Alignment:
| Q |
28 |
gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgatttta |
127 |
Q |
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| T |
53561944 |
gccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaa |
53561845 |
T |
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| Q |
128 |
ccgaaaaagcaccttcctcttccaacctccaa |
159 |
Q |
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| T |
53561844 |
ccgaaaaagtaccgtcctcttccaaactccaa |
53561813 |
T |
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