View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18841_low_14 (Length: 204)

Name: NF18841_low_14
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18841_low_14
NF18841_low_14
[»] chr3 (29 HSPs)
chr3 (1-204)||(22458169-22458372)
chr3 (1-204)||(22481150-22481353)
chr3 (3-204)||(22357684-22357885)
chr3 (3-204)||(22367606-22367810)
chr3 (3-204)||(22442424-22442628)
chr3 (3-204)||(22635188-22635389)
chr3 (120-204)||(22430972-22431056)
chr3 (120-204)||(22436433-22436517)
chr3 (7-65)||(22430856-22430914)
chr3 (3-65)||(22436313-22436375)
chr3 (3-65)||(22467633-22467695)
chr3 (3-65)||(22630123-22630185)
chr3 (8-59)||(22180157-22180208)
chr3 (103-204)||(22630223-22630324)
chr3 (3-59)||(21937893-21937949)
chr3 (11-59)||(22115825-22115873)
chr3 (3-65)||(30988975-30989037)
chr3 (9-65)||(22353500-22353557)
chr3 (103-192)||(22353595-22353684)
chr3 (3-59)||(22028740-22028796)
chr3 (3-59)||(22035257-22035313)
chr3 (3-59)||(22053446-22053502)
chr3 (3-59)||(22105448-22105504)
chr3 (3-59)||(22187728-22187784)
chr3 (103-204)||(22467733-22467834)
chr3 (3-44)||(22656736-22656777)
chr3 (3-59)||(21931161-21931217)
chr3 (3-59)||(21946364-21946420)
chr3 (11-59)||(22614949-22614997)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 22458169 - 22458372
Alignment:
Q  1 accttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||||||    
T  22458169 accttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacagatcatggtaaccgagacctacaattttttttatcttcaaatcttct 22458268  T
Q  101 tttaactctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggca 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22458269 tttaactctatatttagattttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggca 22458368  T
Q  201 atcc 204  Q
    ||||    
T  22458369 atcc 22458372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 22481150 - 22481353
Alignment:
Q  1 accttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||||||    
T  22481150 accttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacagatcatggtaaccgagacctacaattttttttatcttcaaatcttct 22481249  T
Q  101 tttaactctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggca 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22481250 tttaactctatatttagattttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggca 22481349  T
Q  201 atcc 204  Q
    ||||    
T  22481350 atcc 22481353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 22357684 - 22357885
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttt 102  Q
    ||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||  |  |||| ||        ||  |  ||| ||| |     
T  22357684 cttcaggatataatccaaaatacaagaaacatgacttgaggtagtaaggcaaatcatggtaactaaatcctaaaatttttcttattatggaatattcctc 22357783  T
Q  103 taactctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaat 202  Q
    |||||||  ||||| | ||||||||||||||||||||||   || | || ||||||||  || ||||||||||||||||| ||||||||||||||| |||    
T  22357784 taactctgcatttatattttcactaaacttataccattccattggaattttatctttgggagctaaaataccaccaatgactacaattgctagtggtaat 22357883  T
Q  203 cc 204  Q
    ||    
T  22357884 cc 22357885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 22367606 - 22367810
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttt 102  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||| ||| ||||||||||||||  || |||| ||        ||| |  ||| ||| ||    
T  22367606 cttcaggatataatccaaagtacaagaaacatgacttgaggttgcaaggcaaatcatggtaactaagtcctagaattttttttatcatggaatattcctt 22367705  T
Q  103 taact---ctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggc 199  Q
    | |||   ||  ||||| | |||||||||||||| |||||||   || ||| ||||||||||||| ||||||||||||||||| ||||||||| |||||     
T  22367706 tgactgatctgcatttatattttcactaaacttagaccattcaattggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggt 22367805  T
Q  200 aatcc 204  Q
    |||||    
T  22367806 aatcc 22367810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 22442424 - 22442628
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttt 102  Q
    |||| |||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||| ||| |||| ||        |   |  ||| ||| ||    
T  22442424 cttcgggatataatccaaaatacaagaaacatgacttgaggttgcaaggcaaatcatggtaactgagtcctaaaatttttcttactatggaatattcctt 22442523  T
Q  103 taact---ctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggc 199  Q
     ||||   ||  ||||| | ||||| |||||| |||||||||   ||||||||||||||||  || ||||||||||||||||| |||||||||||||||     
T  22442524 aaactgatctgcatttatattttcattaaactcataccattcaattgtatttctatctttgggagctaaaataccaccaatgactacaattgctagtggt 22442623  T
Q  200 aatcc 204  Q
    |||||    
T  22442624 aatcc 22442628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 22635188 - 22635389
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttt 102  Q
    ||||||||||||||||||||||||| |||||||||||||| | | | | ||||||||||||||  || |||| ||        ||| |  ||| ||| |     
T  22635188 cttcaggatataatccaaaatacaagaaacatgacttgaggtagcatggcaaatcatggtaactaagtcctaaaatttttcttatcatggaatattcctc 22635287  T
Q  103 taactctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaat 202  Q
    |||||||  ||||| | |||||||||||||  ||||||||  || |||||||||  ||| ||||| |||| ||||||||| |||||||||||| || |||    
T  22635288 taactctgcatttatattttcactaaacttcgaccattctattgaatttctatccgtgcgagatagaatatcaccaatgactacaattgctagaggtaat 22635387  T
Q  203 cc 204  Q
    ||    
T  22635388 cc 22635389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 22430972 - 22431056
Alignment:
Q  120 tttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaatcc 204  Q
    |||||||||||||| |||||||   || ||| ||||||||||||| ||||||||||||||||| ||||||||| ||||| |||||    
T  22430972 tttcactaaacttagaccattcaattggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatcc 22431056  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 22436433 - 22436517
Alignment:
Q  120 tttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaatcc 204  Q
    ||||||||||||| |||||||| |  | ||||||||||||||||||||||| ||||||| ||| |||||||||||| || |||||    
T  22436433 tttcactaaacttgtaccattcagtaggatttctatctttgcaagataaaagaccaccagtgactacaattgctagaggtaatcc 22436517  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 22430856 - 22430914
Alignment:
Q  7 aggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 65  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||    
T  22430856 aggatataatccaaaatacaagaaacatgacttgaggttgcaaggcaaatcatggtaac 22430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 22436313 - 22436375
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 65  Q
    ||||||||||||||||||||||||| ||||| |||||||| | ||||| ||||||||||||||    
T  22436313 cttcaggatataatccaaaatacaagaaacacgacttgaggtagtaaggcaaatcatggtaac 22436375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 22467633 - 22467695
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 65  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||  |||| ||||||||    
T  22467633 cttcaggatataatccaaaatacaagaaacatgacttgaggttgtaaggtaaattatggtaac 22467695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 22630123 - 22630185
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 65  Q
    |||||||||| |||||||||||||| |||||||||||||| |||||||  |||||||||||||    
T  22630123 cttcaggatagaatccaaaatacaagaaacatgacttgaggttgtaaggtaaatcatggtaac 22630185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 22180208 - 22180157
Alignment:
Q  8 ggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  22180208 ggatatactccaaaatacaacaaacatgacttgagatagtaaggcaaatcat 22180157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 22630223 - 22630324
Alignment:
Q  103 taactctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaat 202  Q
    |||||||| ||||| | |||||||||||||| |||||||   || ||||||| |||||| |||||||||| ||||  ||| |||||||||||| || |||    
T  22630223 taactctacatttatattttcactaaacttagaccattcaattggatttctaactttgcgagataaaatatcaccggtgactacaattgctagaggtaat 22630322  T
Q  203 cc 204  Q
    ||    
T  22630323 cc 22630324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 21937949 - 21937893
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    |||| ||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||    
T  21937949 cttctggatatactccaaaatacaacaagcatgacttgagatagtaaggcaaatcat 21937893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 22115873 - 22115825
Alignment:
Q  11 tataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    |||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  22115873 tatactccaaaatacaacaaacatgacttgagatagtaaggcaaatcat 22115825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 30988975 - 30989037
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 65  Q
    |||| ||||||| ||||||||||||||| ||||||||||||  ||||| |||||||| |||||    
T  30988975 cttctggatatattccaaaatacaacaagcatgacttgagagagtaaggcaaatcatcgtaac 30989037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 22353500 - 22353557
Alignment:
Q  9 gatataatccaaaatacaacaaacatgacttgagattgt-aagacaaatcatggtaac 65  Q
    ||||||||||||||||||| |||||||||||||| | || ||| ||||||||||||||    
T  22353500 gatataatccaaaatacaagaaacatgacttgaggtagtaaaggcaaatcatggtaac 22353557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 22353595 - 22353684
Alignment:
Q  103 taactctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgc 192  Q
    |||||||  ||||| | |||||||||||||| |||||||   || |||||||||||||| ||||||||||  ||| |||| |||||||||    
T  22353595 taactctgcatttatattttcactaaacttagaccattcaattggatttctatctttgcgagataaaatattacctatgactacaattgc 22353684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 22028796 - 22028740
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    |||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||    
T  22028796 cttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22028740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 22035313 - 22035257
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    |||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||    
T  22035313 cttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22035257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 22053502 - 22053446
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    |||| ||||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||    
T  22053502 cttctggatatactccaaaatacaacaagcatgactcgagatagtaaggcaaatcat 22053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 22105504 - 22105448
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    |||| ||||||| |||||| |||||||| ||||||||||||| ||||| ||||||||    
T  22105504 cttctggatatactccaaagtacaacaagcatgacttgagatagtaaggcaaatcat 22105448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 22187784 - 22187728
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    |||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||    
T  22187784 cttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22187728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 22467733 - 22467834
Alignment:
Q  103 taactctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaat 202  Q
    |||||||| ||||| | |||||||||| ||| |||||||   || |||||||| ||||| |||||||||| ||||  |||  ||||||||||| || |||    
T  22467733 taactctacatttatattttcactaaatttagaccattcaattggatttctatttttgcgagataaaatatcaccggtgacaacaattgctagaggtaat 22467832  T
Q  203 cc 204  Q
    ||    
T  22467833 cc 22467834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 22656736 - 22656777
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagat 44  Q
    |||| ||||||| |||||||||||||||||||||||| ||||    
T  22656736 cttctggatatattccaaaatacaacaaacatgacttaagat 22656777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 21931217 - 21931161
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    |||| ||||||| |||||||||||| || |||| |||||||| ||||| ||||||||    
T  21931217 cttctggatatactccaaaatacaagaagcatggcttgagatagtaaggcaaatcat 21931161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 21946420 - 21946364
Alignment:
Q  3 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    |||| ||||||| ||||||||| ||||| ||||||||||||| | ||| ||||||||    
T  21946420 cttctggatatactccaaaataaaacaagcatgacttgagatagcaaggcaaatcat 21946364  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 22614949 - 22614997
Alignment:
Q  11 tataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 59  Q
    ||||||||||||||||||||||||||  | |||| ||||| ||||||||    
T  22614949 tataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcat 22614997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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