View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18841_low_3 (Length: 470)
Name: NF18841_low_3
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18841_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 188 - 456
Target Start/End: Complemental strand, 55907310 - 55907043
Alignment:
| Q |
188 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttactttctgtgtggctgctttgttatggtcgttttgccatttatg |
287 |
Q |
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| T |
55907310 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttgttcttcttcttttactttctgtgtggctgctttgtgatggtcgttttttgatttatg |
55907211 |
T |
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| Q |
288 |
aaggtaggggaagattatagatttgatggcttaggttaataaggtttttatgaggattagggttcnnnnnnnnnnnnnngacagaatttgagtatggtta |
387 |
Q |
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| T |
55907210 |
aaggtaggggaagat--tagatttgatggcttaggttaataaggtttttatgaggattagggttc-ttttttcttttttgacagaatttgagtatggtta |
55907114 |
T |
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| Q |
388 |
cgaacttgagtgtg--taaaatgtgtgacaaaatcaaggattcagcgagaaatactaaaagagttcaaact |
456 |
Q |
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| T |
55907113 |
cgaacttgagtgtgtataaaatgtgtgacaaaatcaaggattcagcgagaaatactaaaagagttcaaact |
55907043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 55907491 - 55907344
Alignment:
| Q |
16 |
tcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgagggttgtcgttgatcagaaatgtgaagacatattcc |
115 |
Q |
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| T |
55907491 |
tcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcagaaatgtgaagacatattcc |
55907392 |
T |
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| Q |
116 |
caacaattatcagataaataacaattatttacagctgtcacagttgtg |
163 |
Q |
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| T |
55907391 |
caacaattatcagataaataacaattatttacagctgtcacagttgtg |
55907344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 188 - 456
Target Start/End: Complemental strand, 1036052 - 1035793
Alignment:
| Q |
188 |
gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttactttctgtgtggctgctttgttatggtcgttttgccatttatg |
287 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
1036052 |
gtgtttctgaaagcaaccagtttattcaacctcattgttgttcttcttcttcttttactttctgtgtggctactttgtgatggtcgttttgcaatttatg |
1035953 |
T |
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| Q |
288 |
aaggtaggggaagattatagatttgatggcttaggttaataaggtttttatgaggattagggttcnnnnnnnnnnnnnngacagaatttgagtatggtta |
387 |
Q |
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| T |
1035952 |
aaggtaggggaagattat--atttgatggcttaggttaataaggtttttatgaggattagggttcttttttctttttttgaca-------agtatggtta |
1035862 |
T |
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| Q |
388 |
cgaacttgagtgtgtaaaatgtgtgacaaaatcaaggattcagcgagaaatactaaaagagttcaaact |
456 |
Q |
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| T |
1035861 |
cgaacttgagtgtttaaaatgtgtgacaaaatcaaggattcagtgagaaatactaaaagagttcaaact |
1035793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 1036233 - 1036086
Alignment:
| Q |
16 |
tcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgagggttgtcgttgatcagaaatgtgaagacatattcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
1036233 |
tcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcagaaatgtgaagacatattcc |
1036134 |
T |
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| Q |
116 |
caacaattatcagataaataacaattatttacagctgtcacagttgtg |
163 |
Q |
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| T |
1036133 |
gaacaattatcagataaataacaattatttacagctgtcacagttgtg |
1036086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 44575224 - 44575173
Alignment:
| Q |
26 |
ttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagc |
77 |
Q |
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||||||| ||||||||||||||| |||||| | |||||||| |||||||||| |
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| T |
44575224 |
ttggtgattgagagaaactgttttgagacgatggagagagacttcaagtagc |
44575173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 41900307 - 41900247
Alignment:
| Q |
16 |
tcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtag |
76 |
Q |
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| T |
41900307 |
tcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtag |
41900247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 6403848 - 6403901
Alignment:
| Q |
25 |
gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcg |
78 |
Q |
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|||||||| ||||| ||||||||||| |||| ||||||||||||||||||||| |
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| T |
6403848 |
gttggtgatagagaggaactgtttggatacggctgagagagatttcaagtagcg |
6403901 |
T |
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