View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18841_low_5 (Length: 278)
Name: NF18841_low_5
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18841_low_5 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 13054219 - 13054473
Alignment:
| Q |
19 |
cactggaccggcaattcaagctttagttatgttcaataagctatatccagatcataggaagaaagagatagagaatttcattcgcaatgcagttagattc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
13054219 |
cactggaccggcaattcaagctttagttatgttcaataagctatatccagagcataggaagaacgagatagagaatttcattgacaatgcagttagattc |
13054318 |
T |
|
| Q |
119 |
attgaagatatacaaaaagatgatggttcatggtatggaagttggggaatttgctttatttatggtacttattttgctcttggtggtttagcagctgctg |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13054319 |
attgaagatacacaaaaagatgatggttcatggtatggaagttggggaatttgcttcatttatggtacttattttgctcttggaggtttagcagctgctg |
13054418 |
T |
|
| Q |
219 |
gaaacacttataccaattctgttgcgattcgtaaagctgttaaatttcttctctc |
273 |
Q |
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|||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
13054419 |
gaaagacttatagcaattctgttgtgattcgtaaagctgttcaatttcttctctc |
13054473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 105742 - 105994
Alignment:
| Q |
19 |
cactggaccggcaattcaagctttagttatgttcaataagctatatccagatcataggaagaaagagatagagaatttcattcgcaatgcagttagattc |
118 |
Q |
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||||||| | |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| | | |||||| ||||| |
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| T |
105742 |
cactggatcagcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgattc |
105841 |
T |
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| Q |
119 |
attgaagatatacaaaaagatgatggttcatggtatggaagttggggaatttgctttatttatggtacttattttgctcttggtggtttagcagctgctg |
218 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||||| |||||| ||||||| | ||||||| ||| |||||||||||||||||||||||||||| |
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| T |
105842 |
attgaagatatacaaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctg |
105941 |
T |
|
| Q |
219 |
gaaacacttataccaattctgttgcgattcgtaaagctgttaaatttcttctc |
271 |
Q |
| |
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| || ||||||||||||| | ||| ||||| ||||||||||||||||||||| |
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|
| T |
105942 |
gcaagacttataccaattgcgctgctattcgcaaagctgttaaatttcttctc |
105994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 270
Target Start/End: Original strand, 166287 - 166530
Alignment:
| Q |
27 |
cggcaattcaagctttagttatgttcaataagctatatccagatcataggaagaaagagatagagaatttcattcgcaatgcagttagattcattgaaga |
126 |
Q |
| |
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|||| |||||||||||| || |||| || || |||||||||| ||||||||||||||||||||||||||||| | | |||||| ||||||||||||| |
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| T |
166287 |
cggcgattcaagctttaattttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgattcattgaaga |
166386 |
T |
|
| Q |
127 |
tatacaaaaagatgatggttcatggtatggaagttggggaatttgctttatttatggtacttattttgctcttggtggtttagcagctgctggaaacact |
226 |
Q |
| |
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|||||||| || ||||||||||||||||||| |||||| ||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| |
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| T |
166387 |
tatacaaacagccgatggttcatggtatggaaactggggagtttgctttacttatggttgttggtttgctcttggtggtttagcagctgctggaaagact |
166486 |
T |
|
| Q |
227 |
tataccaattctgttgcgattcgtaaagctgttaaatttcttct |
270 |
Q |
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|||||||||| || | ||||||| || ||||||||||||||||| |
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| T |
166487 |
tataccaattgtgctacgattcgcaaggctgttaaatttcttct |
166530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 91012 - 90777
Alignment:
| Q |
36 |
aagctttagttatgttcaataagctatatccagatcataggaagaaagagatagagaatttcattcgcaatgcagttagattcattgaagatatacaaaa |
135 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||| || || ||| |||||||||| ||||| ||||||||| |||||| |
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| T |
91012 |
aagctttagttttgttcaagaagctatatccagggcataggaagaacgagatagataacttgattgccaatgcagttcgattccttgaagatacacaaaa |
90913 |
T |
|
| Q |
136 |
agatgatggttcatggtatggaagttggggaatttgctttatttatggtacttattttgctcttggtggtttagcagctgctggaaacacttataccaat |
235 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| || | ||||||| ||| || |||||||||||||||||||||||||| || | |||||| ||| |
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| T |
90912 |
aactgatggttcatggtatggaagttggggaatttgtttcacttatggttcttggttcgctcttggtggtttagcagctgctggcaagaattatactaat |
90813 |
T |
|
| Q |
236 |
tctgttgcgattcgtaaagctgttaaatttcttctc |
271 |
Q |
| |
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| || ||| ||||||||||||||||||||||||||| |
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| T |
90812 |
tgtgatgctattcgtaaagctgttaaatttcttctc |
90777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 12136152 - 12135900
Alignment:
| Q |
19 |
cactggaccggcaattcaagctttagttatgttcaataagctatatccagatcataggaagaaagagatagagaatttcattcgcaatgcagttagattc |
118 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||| |||| ||| |||||||||| || | |
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| T |
12136152 |
cactggatcggcaattcaagctttagttttgttcaagaaattatatccagagcataggaagaaagagatagacgattttattgccaatgcagttcaatac |
12136053 |
T |
|
| Q |
119 |
attgaagatatacaaaaagatgatggttcatggtatggaagttggggaatttgctttatttatggtacttattttgctcttggtggtttagcagctgctg |
218 |
Q |
| |
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| ||||||| ||||| | ||||||||||||||||||| |||||| |||||||| ||||||||| ||| || || |||||||||||||||||||||| |
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| T |
12136052 |
ctagaagataaacaaacatctgatggttcatggtatggagcttggggtatttgcttcatttatggttcttggttggcacttggtggtttagcagctgctg |
12135953 |
T |
|
| Q |
219 |
gaaacacttataccaattctgttgcgattcgtaaagctgttaaatttcttctc |
271 |
Q |
| |
|
|||| ||||||||||||| || ||| ||||| ||||| ||||||||||||||| |
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|
| T |
12135952 |
gaaagacttataccaattgtgctgctattcgcaaagcagttaaatttcttctc |
12135900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 5719801 - 5719564
Alignment:
| Q |
30 |
caattcaagctttagttatgttcaataagctatatccagatcataggaagaaagagatagagaatttcattcgcaatgcagttagattcattgaagatat |
129 |
Q |
| |
|
||||||||||| | ||| |||| || || ||||||| || ||||| ||| |||| |||||||||||||| || |||||| |||| ||||||||| |
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|
| T |
5719801 |
caattcaagctatggttttgtttaaaaaaatatatcccgagcatagaaaggaagaagtagagaatttcattgcaaaagcagttcaattccttgaagataa |
5719702 |
T |
|
| Q |
130 |
acaaaaagatgatggttcatggtatggaagttggggaatttgctttatttatggtacttattttgctcttggtggtttagcagctgctggaaacacttat |
229 |
Q |
| |
|
||||| | |||||||||||||||||||| ||||||||||||||| | ||||||| ||| ||||||||||||||| |||||| || || || |||||| |
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|
| T |
5719701 |
acaaacaagtgatggttcatggtatggaaattggggaatttgcttcacttatggttcttggtttgctcttggtggtctagcagtcgcgggcaagacttat |
5719602 |
T |
|
| Q |
230 |
accaattctgttgcgattcgtaaagctgttaaatttct |
267 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
5719601 |
gagaattgtgttgcaattcgcaaagctgttaaatttct |
5719564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 5666615 - 5666378
Alignment:
| Q |
30 |
caattcaagctttagttatgttcaataagctatatccagatcataggaagaaagagatagagaatttcattcgcaatgcagttagattcattgaagatat |
129 |
Q |
| |
|
||||||||||| | ||| |||| || || ||||||| || ||||| ||| |||| |||||||||||||| || ||||||| |||| ||||||||| |
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|
| T |
5666615 |
caattcaagctatggttttgtttaaaaaaatatatcccgagcatagaaaggaagaagtagagaatttcattgcaaaagcagttaaattccttgaagataa |
5666516 |
T |
|
| Q |
130 |
acaaaaagatgatggttcatggtatggaagttggggaatttgctttatttatggtacttattttgctcttggtggtttagcagctgctggaaacacttat |
229 |
Q |
| |
|
||||| | |||||||||||||||||||| ||||||||||||||| | ||||||| ||| ||||||||||| ||| || |||| || || || |||||| |
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|
| T |
5666515 |
acaaacaagtgatggttcatggtatggaaattggggaatttgcttcacttatggttcttggtttgctcttggcggtctaacagccgccggtaagacttat |
5666416 |
T |
|
| Q |
230 |
accaattctgttgcgattcgtaaagctgttaaatttct |
267 |
Q |
| |
|
|||| || ||| ||||| ||||||||||||||||| |
|
|
| T |
5666415 |
gagaattgtgctgcaattcgcaaagctgttaaatttct |
5666378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 60 - 267
Target Start/End: Complemental strand, 5687655 - 5687448
Alignment:
| Q |
60 |
tatatccagatcataggaagaaagagatagagaatttcattcgcaatgcagttagattcattgaagatatacaaaaagatgatggttcatggtatggaag |
159 |
Q |
| |
|
||||||| || ||||| ||| |||| |||||||||||||| || ||||||| |||| ||||||||| ||||| | |||||||||||||||||||| |
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|
| T |
5687655 |
tatatcccgagcatagaaaggaagaagtagagaatttcattgcaaaagcagttaaattccttgaagataaacaaacaagtgatggttcatggtatggaaa |
5687556 |
T |
|
| Q |
160 |
ttggggaatttgctttatttatggtacttattttgctcttggtggtttagcagctgctggaaacacttataccaattctgttgcgattcgtaaagctgtt |
259 |
Q |
| |
|
||||||||||||||| | ||||||| ||| ||||||||||| ||| || |||| || || || |||||| |||| || ||| ||||| ||||||||| |
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|
| T |
5687555 |
ttggggaatttgcttcacttatggttcttggtttgctcttggcggtctaacagccgccggcaagacttatgagaattgtgctgcaattcgcaaagctgtt |
5687456 |
T |
|
| Q |
260 |
aaatttct |
267 |
Q |
| |
|
|||||||| |
|
|
| T |
5687455 |
aaatttct |
5687448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 5653079 - 5652914
Alignment:
| Q |
19 |
cactggaccggcaattcaagctttagttatgttcaataagctatatccagatcataggaagaaagagatagagaatttcattcgcaatgcagttagattc |
118 |
Q |
| |
|
||||||| | ||||||||||| |||||| |||| || |||||||||||||| | | || ||||||||||| ||||||||| ||||| ||| ||||| |
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|
| T |
5653079 |
cactggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaagagatagataatttcattgcaaatgcggttcgattc |
5652980 |
T |
|
| Q |
119 |
attgaagatatacaaaaagatgatggttcatggtatggaagttggggaatttgctttatttatggt |
184 |
Q |
| |
|
|||||| | ||||| | ||||||||||||||||| | ||||||||||||||| ||||||||| |
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|
| T |
5652979 |
attgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggt |
5652914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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