View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18841_low_6 (Length: 267)
Name: NF18841_low_6
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18841_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 52512660 - 52512413
Alignment:
| Q |
1 |
acactctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512660 |
acactctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgt |
52512561 |
T |
|
| Q |
101 |
tgttttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctccaaggtatgtatgtatgtttatatacgagtttcaattcaatttcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52512560 |
tgttttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctccaaggtatgtatgtatgtttatatatgagtttcaattcaatttcaat |
52512461 |
T |
|
| Q |
201 |
tactcactca----ctcatcattaacttaattaattgcattcatatag |
244 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52512460 |
tactcactcactcactcatcattaacttaattaattgcattcatatag |
52512413 |
T |
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