View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18841_low_7 (Length: 244)
Name: NF18841_low_7
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18841_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 18840395 - 18840185
Alignment:
| Q |
16 |
tgaattatgcattataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
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| T |
18840395 |
tgaattatgcattataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgatatgggggctccgccacatggtaagtcttctaa |
18840296 |
T |
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| Q |
116 |
aatggtttatagccccattcctccctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatattttcatttgaaatttaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18840295 |
aatggtttatagccccattcctccctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatattttcatttgaaatataac |
18840196 |
T |
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| Q |
216 |
cggtgtatctt |
226 |
Q |
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||||||||||| |
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| T |
18840195 |
cggtgtatctt |
18840185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 50011651 - 50011482
Alignment:
| Q |
25 |
cattataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggttta |
124 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |
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| T |
50011651 |
cattataatttcttt--caggctgaagctaagtttggatatcttcttgaagctcttgacatgggggctccgccacatggtaagtcttctaaaatgattta |
50011554 |
T |
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| Q |
125 |
tagccccattcctccctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatat |
197 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50011553 |
tagccccattcctccc-ttgtcgataaactggattatcttattagagtagcatttgtctgtgcacaaccatat |
50011482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 18851565 - 18851440
Alignment:
| Q |
17 |
gaattatgcattataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
18851565 |
gaattatgcattataatttctttttcaggctgaagcgaagtatggatatcttcttgaagctcttgacatgggggctccgccacatggtaaatcttctaaa |
18851466 |
T |
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| Q |
117 |
atggtttatagccccattcctccctt |
142 |
Q |
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|||||||||||||||||||||||||| |
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| T |
18851465 |
atggtttatagccccattcctccctt |
18851440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 44108701 - 44108530
Alignment:
| Q |
25 |
cattataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaaaatggttta |
124 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||| |||| |
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| T |
44108701 |
cattataatttctttttcaggctgaagctaagtttggatatcttcttgaagctctcgacatgggggctccaccacatggtaagtcttctaaaatgattta |
44108602 |
T |
|
| Q |
125 |
tagccccattcctccctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatat |
197 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44108601 |
tagccccattcctccc-ttgtcgataaactggattatcttattagagtagcatttgtctgtgcacaaccatat |
44108530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 51296477 - 51296303
Alignment:
| Q |
16 |
tgaattatgcattataatttctttttcaggctgaagcgaagtttggatatcttcttgaagctcttgacatgggagctccgccacatggtatgtcttctaa |
115 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
51296477 |
tgaattatgcattataaattctttttcaggctgaagcgaagtttggacatcttcttgaagctcttgacatgggggctccgccacatggtaattcttctaa |
51296378 |
T |
|
| Q |
116 |
aatggtttatagccccattcctccctttgtcgataaactgaattatcttattagagtagcatttgtctgtgcacaaccatatt |
198 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51296377 |
aatggtttatagcccca--------cttgtcgatgaactgaattatctaattagagtagcatttgtctgtgcacaaccatatt |
51296303 |
T |
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