View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18841_low_9 (Length: 240)
Name: NF18841_low_9
Description: NF18841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18841_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 230938 - 230731
Alignment:
| Q |
14 |
agatcaaaccctcaagaagaaacaaacttatagttaggcatacctaacttgttttgaattaaaaagctagaaatgaaggatgaagcagattcctaagaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
230938 |
agatcaaaccctcaagaagaaacaaacttatagttaggcatacctaacttgttttgaattaaaaagctagaaatgaaggatgaagcagattcccaagaaa |
230839 |
T |
|
| Q |
114 |
acaattcttgaattgttaagccaaagtttgcaacggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattcatgctagctaaaag |
213 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230838 |
acaattcttgaattgttaagccaaagtttgcaagggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattcatgctagctaaaag |
230739 |
T |
|
| Q |
214 |
tttcatac |
221 |
Q |
| |
|
|||||||| |
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|
| T |
230738 |
tttcatac |
230731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 27842515 - 27842483
Alignment:
| Q |
151 |
atcagcacactgatttccttctctaaaaatatg |
183 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
27842515 |
atcagcacactgatttccttctctataaatatg |
27842483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 12488561 - 12488359
Alignment:
| Q |
19 |
aaaccctcaagaagaaacaaacttatagttaggcatacctaacttgttttgaattaaaaagctagaaatgaaggatgaagcagattcctaagaaaacaat |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
12488561 |
aaaccctcaagaagaaacaaacctatagttaggcattcctaacttgttttgaattaaaaagctagaaatgaaggatggagcagattcccaagaaaacaat |
12488462 |
T |
|
| Q |
119 |
tcttgaattgttaagccaaagtttgcaacggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattcatgctagctaaaagtttca |
218 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
12488461 |
ccttgaattgttaagccaaagtttgcaagggaatcaacacactgatttccttctctaaaaatatgagatacaacaaaattcatgctagctaagagtttca |
12488362 |
T |
|
| Q |
219 |
tac |
221 |
Q |
| |
|
||| |
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|
| T |
12488361 |
tac |
12488359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 19612882 - 19613011
Alignment:
| Q |
74 |
aaaaagctagaaatgaaggatgaagcagattcctaagaaaacaattcttgaattgttaagccaaagtttgcaacggaatcagcacactgatttccttctc |
173 |
Q |
| |
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||||| ||||||| |||||||| | | |||||| ||| ||||||| |||| | ||||||||||||||| ||| |||||| |||| || ||||||| || |
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| T |
19612882 |
aaaaatctagaaaggaaggatggaactgattcccaagtaaacaatccttgcaaggttaagccaaagtttccaagagaatcaacacattggtttccttttc |
19612981 |
T |
|
| Q |
174 |
taaaaatatgagatataacaaaattcatgc |
203 |
Q |
| |
|
|||| |||||||| | | ||||||||||| |
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|
| T |
19612982 |
taaagatatgagaaaccataaaattcatgc |
19613011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 51657758 - 51657859
Alignment:
| Q |
101 |
gattcctaagaaaacaattcttgaattgttaagccaaagtttgcaacggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattca |
200 |
Q |
| |
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||||||||||||||||| | ||| ||| || || | |||||||| |||||||||||| || || ||||| ||| |||||||||| || |||||||||| |
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| T |
51657758 |
gattcctaagaaaacaaaccatgagatgtcaaacctatgtttgcaagggaatcagcacattggttcccttccctataaatatgagaaatcacaaaattca |
51657857 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
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|
| T |
51657858 |
tg |
51657859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 21851775 - 21851572
Alignment:
| Q |
18 |
caaaccctcaagaagaaacaaacttatagttaggcatacctaacttgttttgaattaaaaagctagaaatgaaggatgaagcagattcctaagaaaacaa |
117 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||| |
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|
| T |
21851775 |
caaaccctcaaaaggaaacaaatctatagttaggcattcctaacttgttttgaacaaaaaaactagaaatgaaggatggagcagattcccaagaaaacaa |
21851676 |
T |
|
| Q |
118 |
ttcttgaattgttaagccaaagtttgcaacggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattcatgctagctaaaagtttc |
217 |
Q |
| |
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| |||||||||| | |||||||||||||| ||||| ||||| || |||||||||||||| || |||||||| ||||||||||||| | |||||| ||| |
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|
| T |
21851675 |
tccttgaattgtcaggccaaagtttgcaagagaatctgcacattggtttccttctctaaatatgtgagatattacaaaattcatgccatttaaaagcttc |
21851576 |
T |
|
| Q |
218 |
atac |
221 |
Q |
| |
|
|||| |
|
|
| T |
21851575 |
atac |
21851572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 11072662 - 11072813
Alignment:
| Q |
47 |
ttaggcatacctaacttgttttgaattaaaaagctagaaatgaaggatgaagcagattcctaagaaaacaattcttgaattgttaagccaaagtttgcaa |
146 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| || |||||||| ||| |||||| ||||||| ||| ||| || |||||||||||||||| |
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| T |
11072662 |
ttaggcatacctaacttgttttgaaccaaaaaactagtaaggaaggatggagctgattcccaagaaaataatccttctggagtcaagccaaagtttgcaa |
11072761 |
T |
|
| Q |
147 |
cggaatcagcacactgatttccttctctaaaaatatgagatataacaaaatt |
198 |
Q |
| |
|
||||||||||||||| ||| ||||||| | |||||| | | ||||||||| |
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|
| T |
11072762 |
aggaatcagcacactggtttatttctctagatatatgacaaacaacaaaatt |
11072813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 40543939 - 40543990
Alignment:
| Q |
151 |
atcagcacactgatttccttctctaaaaatatgagatataacaaaattcatg |
202 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||| || ||| |||||| |
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|
| T |
40543939 |
atcagcacactgatttccttccctaaaaatgtgagatacaataaagttcatg |
40543990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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