View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18842_high_16 (Length: 227)
Name: NF18842_high_16
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18842_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 3342701 - 3342855
Alignment:
| Q |
1 |
tttggaacattattttcttacacatccaccatatcaataacaatcctaatatttcacaaccacctatagacaaacataatccataaacatttgaatccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3342701 |
tttggaacattattttcttacacatccaccatatcaataacaatcctactatttcacaacc---tatagacaaacataatccataaacatttgaatccca |
3342797 |
T |
|
| Q |
101 |
aacgttaacctctcatcacaatacataaacaaagaaagagaattgaagagaggacaaa |
158 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3342798 |
aacgttaacctcttatcacaatacataaacaaagaaagagaattgaagagaggacaaa |
3342855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 3342898 - 3342963
Alignment:
| Q |
162 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3342898 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttat |
3342963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University