View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18842_high_3 (Length: 405)

Name: NF18842_high_3
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18842_high_3
NF18842_high_3
[»] chr5 (6 HSPs)
chr5 (11-387)||(17387784-17388160)
chr5 (51-263)||(26465723-26465935)
chr5 (51-242)||(9845913-9846104)
chr5 (204-259)||(23958431-23958486)
chr5 (291-370)||(23884339-23884418)
chr5 (192-242)||(11925620-11925670)
[»] chr3 (8 HSPs)
chr3 (117-371)||(18433010-18433264)
chr3 (21-166)||(31194154-31194299)
chr3 (21-166)||(52774014-52774159)
chr3 (20-96)||(50059872-50059948)
chr3 (192-259)||(10544360-10544427)
chr3 (199-263)||(12297686-12297750)
chr3 (199-263)||(19585641-19585705)
chr3 (327-371)||(37193420-37193464)
[»] chr2 (8 HSPs)
chr2 (117-371)||(30154766-30155020)
chr2 (50-258)||(26360449-26360657)
chr2 (49-258)||(18498778-18498987)
chr2 (202-365)||(20041650-20041813)
chr2 (204-271)||(34978790-34978857)
chr2 (204-256)||(13131885-13131937)
chr2 (291-371)||(23681998-23682078)
chr2 (206-242)||(40091446-40091482)
[»] chr8 (6 HSPs)
chr8 (20-256)||(20077580-20077816)
chr8 (20-370)||(44288635-44288985)
chr8 (49-258)||(25574806-25575015)
chr8 (117-238)||(2997639-2997760)
chr8 (206-242)||(12461803-12461839)
chr8 (199-263)||(19800057-19800121)
[»] scaffold0779 (1 HSPs)
scaffold0779 (49-258)||(4901-5110)
[»] chr4 (4 HSPs)
chr4 (200-256)||(19803288-19803344)
chr4 (21-166)||(13988964-13989109)
chr4 (200-256)||(8122123-8122179)
chr4 (201-256)||(14040099-14040154)
[»] scaffold0014 (1 HSPs)
scaffold0014 (21-166)||(94808-94953)
[»] chr1 (6 HSPs)
chr1 (51-118)||(6531821-6531888)
chr1 (194-244)||(9796043-9796093)
chr1 (291-371)||(37737667-37737747)
chr1 (199-263)||(52778966-52779030)
chr1 (201-264)||(47803917-47803980)
chr1 (206-242)||(8190678-8190714)
[»] chr7 (5 HSPs)
chr7 (117-370)||(16257600-16257853)
chr7 (291-371)||(3004675-3004755)
chr7 (201-242)||(19606707-19606748)
chr7 (201-242)||(37012368-37012409)
chr7 (206-242)||(4245006-4245042)
[»] chr6 (5 HSPs)
chr6 (117-166)||(26134522-26134571)
chr6 (192-238)||(21752805-21752851)
chr6 (192-238)||(33580683-33580729)
chr6 (327-371)||(33460983-33461027)
chr6 (327-371)||(34825140-34825184)
[»] scaffold0329 (1 HSPs)
scaffold0329 (199-263)||(12295-12359)


Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Original strand, 17387784 - 17388160
Alignment:
Q  11 cataggcaacaaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  17387784 cataggcaacaaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccagattggttgcaaaaggatacaaccaaatagag 17387883  T
Q  111 ggtttggatttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaat 210  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17387884 ggtttggatttctttgacaccttttcaccaatggccaaacttactactgtcagaacactactagctctatctgccataaataactggaatttacatcaat 17387983  T
Q  211 tagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaaggtgtcacatgcacaaaaccaaatcaagtttgtaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17387984 tagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaaggtgtcacatgcacaaaaccaaatcaagtttgtaa 17388083  T
Q  311 attgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgacagcactattgattcaag 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17388084 attgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgacagcactattgattcaag 17388160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 263
Target Start/End: Complemental strand, 26465935 - 26465723
Alignment:
Q  51 gatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaaac 150  Q
    ||||| || |||||||| ||||| || | | | |||||||| || ||||||||||| |||||||||||||  ||||| || | ||||||||| || ||||    
T  26465935 gatggctcaattgaaagatacaaagcaagacttgttgcaaagggttacaaccaaattgagggtttggattattttgatacatattcaccagttgctaaac 26465836  T
Q  151 ttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaaga 250  Q
    | || |||||||||||  |  ||||| ||||    || ||||||||| |  | |||||||| ||||| || ||||| ||||| ||||| || ||||||||    
T  26465835 tcacaactgtcagaaccattatagctttagcatatatgaataactggcacattcatcaattggatgtcaataatgcatttttgcatggtgacctccaaga 26465736  T
Q  251 agatgtatatatg 263  Q
    |||||| ||||||    
T  26465735 agatgtgtatatg 26465723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 242
Target Start/End: Complemental strand, 9846104 - 9845913
Alignment:
Q  51 gatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaaac 150  Q
    |||||||| |||||||| | ||| || | |||||||||||| || || |||||||| || || |||||||  ||||| |||| |||||| || || ||||    
T  9846104 gatggatctattgaaagattcaaagctagattagttgcaaagggttataaccaaattgaaggcttggattattttgatacctattcacctgtagctaaac 9846005  T
Q  151 ttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagat 242  Q
    | || ||  |||||  | |  | ||||||||| |||| ||||| ||| || ||||||||||||||||||| ||||||||| | |||||||||    
T  9846004 taaccacaatcagattaattttggctctagcttccatcaataattggcatctacatcaattagatgtaaataatgcctttctgcatggagat 9845913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 23958431 - 23958486
Alignment:
Q  204 catcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtata 259  Q
    |||||||||||||| || ||| ||||||| || |||||||||||||||||||||||    
T  23958431 catcaattagatgttaataattcctttttgcagggagatctccaagaagatgtata 23958486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 23884418 - 23884339
Alignment:
Q  291 aaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgac 370  Q
    ||||||||||| || || ||| |||| |||  | | ||||| |||||||||||||| ||||||||||||||||| |||||    
T  23884418 aaaccaaatcaggtctgcaaactgattaaatccctctatggattaaagcaagcaagcaggaagtggtatgaaaagttgac 23884339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 11925620 - 11925670
Alignment:
Q  192 aactggaatttacatcaattagatgtaaacaatgcctttttacatggagat 242  Q
    |||||| ||||||||||| | ||||||||||||||| || |||||||||||    
T  11925620 aactggtatttacatcaacttgatgtaaacaatgccattctacatggagat 11925670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 117 - 371
Target Start/End: Complemental strand, 18433264 - 18433010
Alignment:
Q  117 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatg 216  Q
    ||||| ||||| ||||||||||| || || ||||| ||||| || |||||| |||| ||||| ||| | ||  ||   ||| ||||||||||||||||||    
T  18433264 gatttttttgataccttttcacctgttgcaaaactcactacagttagaacattacttgctcttgcttcaattcattcttggcatttacatcaattagatg 18433165  T
Q  217 taaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaaggtgtcacatgcacaaaaccaaatcaagtttgtaaattgat 316  Q
    |||| ||||| ||||| ||||||||  | |||||||| || || ||| | ||||||||||||||  |||| || ||||| ||||||||||||||| |  |    
T  18433164 taaataatgcgtttttgcatggagaattacaagaagaagtttacatgactattccagaaggtgtttcatgtaccaaacctaatcaagtttgtaaacttct 18433065  T
Q  317 gaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca 371  Q
     |||||  | || ||| | || |||||||| ||||| ||||||||||||||||||    
T  18433064 taaaagtctctacggtcttaaacaagcaagcaggaaatggtatgaaaaattgaca 18433010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 31194299 - 31194154
Alignment:
Q  21 aaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatt 120  Q
    |||||||| |||||||| || |||||| | |||||   ||| || ||||||||||||| | | || || ||||| || || ||| | || ||| | ||||    
T  31194299 aaatgggtgtataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggttataatcaagttgaaggtattgatt 31194200  T
Q  121 tctttgacaccttttcaccagtggccaaacttactactgtcagaac 166  Q
    | |||||||| ||||||||||| |||||| ||||||||||||||||    
T  31194199 tttttgacactttttcaccagtagccaaaattactactgtcagaac 31194154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 52774014 - 52774159
Alignment:
Q  21 aaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatt 120  Q
    |||||||| |||||||| || |||||| | |||||   ||| || ||||||||||||| | | || || ||||| || || ||| | || ||| | ||||    
T  52774014 aaatgggtgtataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggttataatcaagttgaaggtattgatt 52774113  T
Q  121 tctttgacaccttttcaccagtggccaaacttactactgtcagaac 166  Q
    | |||||||| ||||||||||| |||||| ||||||||||||||||    
T  52774114 tttttgacactttttcaccagtagccaaaattactactgtcagaac 52774159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 50059872 - 50059948
Alignment:
Q  20 caaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggat 96  Q
    |||||||||||| || |||||  | ||| |||||||||| ||||||||||||||||| | ||| ||||| |||||||    
T  50059872 caaatgggtatacaatataaaatacaaggctgatggatctattgaaaggtacaaggcaagattggttgccaaaggat 50059948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 10544360 - 10544427
Alignment:
Q  192 aactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtata 259  Q
    |||||| ||||| |||||||||||||||||||||| ||  | ||||||||| | |||||| |||||||    
T  10544360 aactggcatttatatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtata 10544427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 12297686 - 12297750
Alignment:
Q  199 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 263  Q
    ||||||||||| | ||||||| |||||| ||| | ||||||||| | ||||||||||| ||||||    
T  12297686 atttacatcaacttgatgtaagcaatgcttttcttcatggagatttacaagaagatgtttatatg 12297750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 19585705 - 19585641
Alignment:
Q  199 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 263  Q
    ||||||||||| | |||||||||||||| ||  | ||||||||| | ||||||||||| ||||||    
T  19585705 atttacatcaacttgatgtaaacaatgctttccttcatggagatttacaagaagatgtttatatg 19585641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 37193420 - 37193464
Alignment:
Q  327 tatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca 371  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||    
T  37193420 tatggtttgaagcaagcaagtaggaaatggtatgagaagttgaca 37193464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 117 - 371
Target Start/End: Original strand, 30154766 - 30155020
Alignment:
Q  117 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatg 216  Q
    ||||| ||||| ||||||||||| || || ||||| ||||| || |||||| |||| ||||| ||| | ||  ||   ||| ||||||||||||||||||    
T  30154766 gatttttttgataccttttcacctgttgcaaaactcactacagttagaacattacttgctcttgcttcaattcattcttggcatttacatcaattagatg 30154865  T
Q  217 taaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaaggtgtcacatgcacaaaaccaaatcaagtttgtaaattgat 316  Q
    |||| ||||| ||||| ||||||||  | |||||||| || |||||| | ||||||||||||||   ||| || ||||| ||||||||||||||| |  |    
T  30154866 taaataatgcgtttttgcatggagaattacaagaagaagtttatatgactattccagaaggtgttttatgtaccaaacctaatcaagtttgtaaacttct 30154965  T
Q  317 gaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca 371  Q
     |||||  | || ||| | || |||||||| ||||| ||||||||||||||||||    
T  30154966 taaaagtctctacggtcttaaacaagcaagcaggaaatggtatgaaaaattgaca 30155020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 258
Target Start/End: Complemental strand, 26360657 - 26360449
Alignment:
Q  50 tgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaaa 149  Q
    |||||| || |||||||||||||| |||| | ||||||| ||||| ||||| || || |||||| |||||||||||||||| || || || || || ||     
T  26360657 tgatggctctattgaaaggtacaaagccagactagttgctaaagggtacaatcagattgagggtctggatttctttgacactttctctcctgttgctaag 26360558  T
Q  150 cttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaag 249  Q
    || || ||||| ||||| || |||||| | ||| | ||  |||| ||| ||||||||||| | ||||| || ||||| ||| | ||||||||| | ||||    
T  26360557 ctcacaactgttagaactcttctagctgttgcttctattcataattggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaag 26360458  T
Q  250 aagatgtat 258  Q
    |||||||||    
T  26360457 aagatgtat 26360449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 258
Target Start/End: Complemental strand, 18498987 - 18498778
Alignment:
Q  49 ctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaa 148  Q
    ||||||| || |||||||||||||| |||| | ||||||| ||||| ||||| || || |||||| |||||||||||||||| || || || || || ||    
T  18498987 ctgatggctctattgaaaggtacaaagccagactagttgctaaagggtacaatcagattgagggtctggatttctttgacactttctctcctgttgctaa 18498888  T
Q  149 acttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaa 248  Q
     || || ||| | ||||| || |||||| | ||| | ||  |||| ||| ||||||||||| | ||||| || ||||| ||| | ||||||||| | |||    
T  18498887 gctcacaactattagaactcttctagctgttgcttctattcataattggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaa 18498788  T
Q  249 gaagatgtat 258  Q
    ||||||||||    
T  18498787 gaagatgtat 18498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 202 - 365
Target Start/End: Complemental strand, 20041813 - 20041650
Alignment:
Q  202 tacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaaggtgtcacatgcacaaaaccaaatca 301  Q
    ||||||| || ||||||||||| |||||||||||||| || || |||||||| ||||| ||| || | ||  |||| ||   |||  |||||||||| ||    
T  20041813 tacatcagttggatgtaaacaacgcctttttacatggtgacctacaagaagaagtatacatgtcagtgcctcaaggagttcaatgttcaaaaccaaacca 20041714  T
Q  302 agtttgtaaattgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaa 365  Q
    ||||||||||||| ||||     | |||||||| || ||||| |||||||||||||||||||||    
T  20041713 agtttgtaaattgttgaagtctctttatggtttgaaacaagccagtaggaagtggtatgaaaaa 20041650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 34978857 - 34978790
Alignment:
Q  204 catcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattcc 271  Q
    |||||||| |||||||||||||||||| | ||||||||||| || |||||||| || ||||| |||||    
T  34978857 catcaattggatgtaaacaatgcctttcttcatggagatcttcatgaagatgtttacatggccattcc 34978790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 13131885 - 13131937
Alignment:
Q  204 catcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgt 256  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||| |||||| ||||    
T  13131885 catcaattagatgtaaataatgcatttttgcatggtgatcttcaagaaaatgt 13131937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 23681998 - 23682078
Alignment:
Q  291 aaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca 371  Q
    ||||||||||| || || ||| |||| |||  | | ||||| |||||||||||||| | |||||||||||||| |||||||    
T  23681998 aaaccaaatcatgtatgcaaactgattaaatccctctatggattaaagcaagcaagcatgaagtggtatgaaatattgaca 23682078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 40091446 - 40091482
Alignment:
Q  206 tcaattagatgtaaacaatgcctttttacatggagat 242  Q
    |||||| |||||||| |||||||||||||||||||||    
T  40091446 tcaatttgatgtaaaaaatgcctttttacatggagat 40091482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 20077580 - 20077816
Alignment:
Q  20 caaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggat 119  Q
    ||||||||| |||| | | || |||||| | ||||| || |||||||||||||| |||| | | || |||||||| ||||| ||||| ||||| ||||||    
T  20077580 caaatgggtgtatagagtgaaacataaggcagatggctctattgaaaggtacaaagccagactggtagcaaaaggttacaatcaaattgagggcttggat 20077679  T
Q  120 ttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaa 219  Q
    || |||||||||||||| || || |||||||| || || || ||||| || |||||| | ||| || | ||  ||||| |||||||||| ||||||||||    
T  20077680 ttttttgacaccttttctcctgttgccaaactcacaacagttagaactcttctagctattgcttccctcaaacactggcatttacatcagttagatgtaa 20077779  T
Q  220 acaatgcctttttacatggagatctccaagaagatgt 256  Q
    ||||||| ||| | |||| |||| | || ||||||||    
T  20077780 acaatgcatttcttcatgaagatttgcaggaagatgt 20077816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 44288985 - 44288635
Alignment:
Q  20 caaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggat 119  Q
    |||||||||||| ||| | ||||| ||  ||||||| ||  ||||||| |  || |||| ||||||||||||||| ||||| ||| | ||||| || |||    
T  44288985 caaatgggtatacaaagttaagcacaaagctgatggctcagttgaaagatttaaagccagattagttgcaaaaggctacaatcaagttgagggcttagat 44288886  T
Q  120 ttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaa 219  Q
    |  |||||||| ||||||||  |||| ||||| |||||||| ||||   |||| ||| ||||| | || ||| | ||| |||| ||||| ||||||||||    
T  44288885 tattttgacacattttcacctatggcgaaactcactactgtaagaatggtacttgctttagcttcaattaatcattggcatttgcatcagttagatgtaa 44288786  T
Q  220 acaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaaggtgtcacatgcaca-aaaccaaatcaagtttgtaaattgatga 318  Q
    | ||||| ||||| ||||| |||||| |||| ||||| |||||| |  |||| |||||||| ||| | | | || || |||| |||||||||||||   |    
T  44288785 ataatgcatttttgcatggggatctcgaagaggatgtctatatgactgttcctgaaggtgt-acaagtagataagcccaatctagtttgtaaattgcaaa 44288687  T
Q  319 aaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgac 370  Q
    ||   || ||||| || ||||||||||| ||||||||||||||||| |||||    
T  44288686 aatcattatatgggttgaagcaagcaagcaggaagtggtatgaaaagttgac 44288635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 258
Target Start/End: Complemental strand, 25575015 - 25574806
Alignment:
Q  49 ctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaa 148  Q
    ||||||| || ||||||||||||||||||| | ||||||| ||||| ||||| || || |||||| ||||||||||| |||| || || || || || ||    
T  25575015 ctgatggctctattgaaaggtacaaggccagactagttgctaaagggtacaatcagattgagggtctggatttctttaacactttctctcctgttgctaa 25574916  T
Q  149 acttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaa 248  Q
     || || ||||| ||||| || |||| | | ||| | ||  |||| ||| ||||||||||| | ||||| || ||||| ||| | ||||||||| | |||    
T  25574915 gctcacaactgttagaactcttctaggtgttgcttctattcataattggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaa 25574816  T
Q  249 gaagatgtat 258  Q
    ||||||||||    
T  25574815 gaagatgtat 25574806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 2997639 - 2997760
Alignment:
Q  117 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatg 216  Q
    ||||| ||||| || ||||||||||| ||||| ||||| || || ||||   |||| ||  ||||| | ||||| |||||| |||||||||| || ||||    
T  2997639 gatttttttgatactttttcaccagtagccaagcttaccacagtaagaattttacttgccatagcttcaataaaaaactggcatttacatcagttggatg 2997738  T
Q  217 taaacaatgcctttttacatgg 238  Q
    |||||||||| ||| |||||||    
T  2997739 taaacaatgcttttctacatgg 2997760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 12461803 - 12461839
Alignment:
Q  206 tcaattagatgtaaacaatgcctttttacatggagat 242  Q
    |||||| |||||||| |||||||||||||||||||||    
T  12461803 tcaatttgatgtaaaaaatgcctttttacatggagat 12461839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 19800121 - 19800057
Alignment:
Q  199 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 263  Q
    |||||||||| || |||||||||||||| ||||  |||||||||||  || | ||||||||||||    
T  19800121 atttacatcagttggatgtaaacaatgcattttcgcatggagatctttaataggatgtatatatg 19800057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0779 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 258
Target Start/End: Original strand, 4901 - 5110
Alignment:
Q  49 ctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaa 148  Q
    ||||||| || |||||||||||||| |||| ||||||||| ||||| ||||| || || |||||| || |||| |||||||| || || || || || ||    
T  4901 ctgatggctctattgaaaggtacaaagccagattagttgctaaagggtacaatcagattgagggtctgaatttttttgacactttctctcctgttgctaa 5000  T
Q  149 acttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaa 248  Q
    ||| || ||| | ||||| || |||| | | ||| | ||  |||| ||||||||||||||| | ||||| || ||||  ||| | ||||||||| | |||    
T  5001 actcacaactattagaactcttctagttgttgcttctattcataattggaatttacatcaacttgatgtgaataatgaatttcttcatggagatttgcaa 5100  T
Q  249 gaagatgtat 258  Q
    ||||||||||    
T  5101 gaagatgtat 5110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 19803344 - 19803288
Alignment:
Q  200 tttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgt 256  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||    
T  19803344 tttacatcaattagatgtaaacaatgcctttcttcatggtgatctccatgaagatgt 19803288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 13988964 - 13989109
Alignment:
Q  21 aaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatt 120  Q
    |||||||| |||||||| || |||||| | |||||   ||| || ||||||||||||| | | || || ||||| || || ||| | || ||| | ||||    
T  13988964 aaatgggtgtataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggctataatcaagttgaaggtattgatt 13989063  T
Q  121 tctttgacaccttttcaccagtggccaaacttactactgtcagaac 166  Q
    | |||||||| ||||||||||| |||||| ||||||||||||||||    
T  13989064 tttttgacactttttcaccagtagccaaaattactactgtcagaac 13989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 8122179 - 8122123
Alignment:
Q  200 tttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgt 256  Q
    |||||||||||| |||||||||||||||||| | ||||||||||| || ||||||||    
T  8122179 tttacatcaattggatgtaaacaatgcctttcttcatggagatcttcatgaagatgt 8122123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 14040099 - 14040154
Alignment:
Q  201 ttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgt 256  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||| || |||||    
T  14040099 ttacatcaattagatgtaaacaatgcatttcttcatggagatctccatgaggatgt 14040154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 94953 - 94808
Alignment:
Q  21 aaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatt 120  Q
    |||||||| |||||||| || |||||| | |||||   ||| || ||||||||||||| | | || || ||||| || || ||| | || ||| | ||||    
T  94953 aaatgggtgtataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggctataatcaagttgaaggtattgatt 94854  T
Q  121 tctttgacaccttttcaccagtggccaaacttactactgtcagaac 166  Q
    | |||||||| ||||||||||| |||||| ||||||||||||||||    
T  94853 tttttgacactttttcaccagtagccaaaattactactgtcagaac 94808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 6531821 - 6531888
Alignment:
Q  51 gatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttgga 118  Q
    ||||||||||| ||||||| ||| ||    |||||||||||||| |||||||||||||||||||||||    
T  6531821 gatggatccatagaaaggttcaaagcacgtttagttgcaaaaggttacaaccaaatagagggtttgga 6531888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 9796093 - 9796043
Alignment:
Q  194 ctggaatttacatcaattagatgtaaacaatgcctttttacatggagatct 244  Q
    ||||||||||||||||||||||||||| | ||| || ||||||||||||||    
T  9796093 ctggaatttacatcaattagatgtaaatattgctttcttacatggagatct 9796043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 37737747 - 37737667
Alignment:
Q  291 aaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca 371  Q
    ||||||||||| || || ||| |||| |||  | | ||||| |||||||||||||| | ||||||||||||||||||||||    
T  37737747 aaaccaaatcaggtatgcaaactgattaaatccctctatggattaaagcaagcaagcatgaagtggtatgaaaaattgaca 37737667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 52778966 - 52779030
Alignment:
Q  199 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 263  Q
    ||||||||||| | |||||||||||||| ||| | ||||||||| | ||||||||||| ||||||    
T  52778966 atttacatcaacttgatgtaaacaatgcttttcttcatggagatttacaagaagatgtttatatg 52779030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 47803917 - 47803980
Alignment:
Q  201 ttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatgg 264  Q
    |||||||||||||||||||| ||||| ||| |||||||| ||||| | |||||  |||||||||    
T  47803917 ttacatcaattagatgtaaaaaatgcttttctacatggatatctcgatgaagaaatatatatgg 47803980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 8190714 - 8190678
Alignment:
Q  206 tcaattagatgtaaacaatgcctttttacatggagat 242  Q
    |||||| |||||||| |||||||||||||||||||||    
T  8190714 tcaatttgatgtaaaaaatgcctttttacatggagat 8190678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 370
Target Start/End: Original strand, 16257600 - 16257853
Alignment:
Q  117 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatg 216  Q
    ||||| |||||||| ||||||||||| |||||| |||||||| ||||||| || || ||  ||||  | || ||    ||| || |||| ||||||||||    
T  16257600 gatttttttgacactttttcaccagtagccaaaattactactatcagaactctccttgccttagcatcaatcaactcatggcatctacaccaattagatg 16257699  T
Q  217 taaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaaggtgtcacatgcacaaaaccaaatcaagtttgtaaattgat 316  Q
    | |||||||| ||| | ||||||||| |    ||||| || || ||| | |||||  |||||||      |||||||||||||||||| ||||||||| |    
T  16257700 tgaacaatgcttttctccatggagatttatctgaagacgtttacatgactattcctcaaggtgttgtcaacacaaaaccaaatcaagtgtgtaaattgtt 16257799  T
Q  317 gaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgac 370  Q
    |||     | ||||||||||||||||| || || || |||||||||||||||||    
T  16257800 gaagtctctttatggtttaaagcaagccagcagaaaatggtatgaaaaattgac 16257853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 3004675 - 3004755
Alignment:
Q  291 aaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca 371  Q
    ||||||||||| || || ||| |||| |||  | | ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  3004675 aaaccaaatcaggtatgcaaactgattaaatccctctatggattaaagcaagcaagcaggaagtggtaagaaaaattgaca 3004755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 19606748 - 19606707
Alignment:
Q  201 ttacatcaattagatgtaaacaatgcctttttacatggagat 242  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  19606748 ttacaccaattagatgttcacaatgcctttttacatggagat 19606707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 37012368 - 37012409
Alignment:
Q  201 ttacatcaattagatgtaaacaatgcctttttacatggagat 242  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  37012368 ttacaccaattagatgttcacaatgcctttttacatggagat 37012409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 4245006 - 4245042
Alignment:
Q  206 tcaattagatgtaaacaatgcctttttacatggagat 242  Q
    |||||| |||||||| |||||||||||||||||||||    
T  4245006 tcaatttgatgtaaaaaatgcctttttacatggagat 4245042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 26134522 - 26134571
Alignment:
Q  117 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaac 166  Q
    ||||| |||||||| ||||||||||| |||||| ||||||||||||||||    
T  26134522 gatttttttgacactttttcaccagtagccaaaattactactgtcagaac 26134571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 21752851 - 21752805
Alignment:
Q  192 aactggaatttacatcaattagatgtaaacaatgcctttttacatgg 238  Q
    |||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  21752851 aactggcatttacatcaattagatgtacacaatgcatttttgcatgg 21752805  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 33580683 - 33580729
Alignment:
Q  192 aactggaatttacatcaattagatgtaaacaatgcctttttacatgg 238  Q
    |||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  33580683 aactggcatttacatcaattagatgtacacaatgcatttttgcatgg 33580729  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 33460983 - 33461027
Alignment:
Q  327 tatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca 371  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||    
T  33460983 tatggtttgaagcaagcaagtaggaaatggtatgagaagttgaca 33461027  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 34825140 - 34825184
Alignment:
Q  327 tatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca 371  Q
    |||||||| ||||||||||||||||| |||||||| || ||||||    
T  34825140 tatggtttgaagcaagcaagtaggaaatggtatgagaagttgaca 34825184  T

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Target: scaffold0329 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 12295 - 12359
Alignment:
Q  199 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 263  Q
    ||||||||||| | |||||||||||||| ||| | ||||||||| | ||||||||||| ||||||    
T  12295 atttacatcaacttgatgtaaacaatgcttttcttcatggagatttacaagaagatgtttatatg 12359  T

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