View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18842_high_4 (Length: 359)
Name: NF18842_high_4
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18842_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 8441567 - 8441248
Alignment:
| Q |
13 |
aaaatcagtattcatggagttgaagacaataagaaatacaaagnnnnnnnnntataatatagacggaccatgataaaatcagtactcctgtttaatttaa |
112 |
Q |
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| T |
8441567 |
aaaatcagtattcatggagttgaagacaataagaaatacaaagaaaaaaaaatataatatagacggaccatgataaaatcagtattcctgtttaatttaa |
8441468 |
T |
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| Q |
113 |
caaaaataaactttcataataggaaattcttacttcnnnnnnntaataataggaaattctttgtcttttccaccctaaattccatctagtggaaaggaga |
212 |
Q |
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| T |
8441467 |
cagaaataaacttttataatagaaaattcttctttcaaaaaaaaaaaaa-aggaaattctttgtcttttccaccctaaattccatctagtggaaaggaga |
8441369 |
T |
|
| Q |
213 |
aatattttcccatggtaacaatgtcttttatccattgctcaaaaaacaggtggatagtttagtttttattatggtcggtctacattgttgtt-tttttct |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8441368 |
aatattttcccatggtaacaatgtcttttatccattgatc---aaacaggtggatagtttagtttttattatggtcggtctacattgttgttctttttct |
8441272 |
T |
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| Q |
312 |
tttacattgtctacaacctttagt |
335 |
Q |
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|||||||||||| ||||||||||| |
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| T |
8441271 |
tttacattgtcttcaacctttagt |
8441248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 8438431 - 8438221
Alignment:
| Q |
13 |
aaaatcagtattcatggagttgaagacaataagaaatacaaagnnnnnnnnn-tataatatagacggaccatgataaaatcagtactcctgtttaattta |
111 |
Q |
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| T |
8438431 |
aaaatcagcattcatggagttgaagacaataagaaatacaaagaaaaaaaatatataatatagacggaccatgataaaatcagtacttctgtttaattta |
8438332 |
T |
|
| Q |
112 |
acaaaaataaactttcataataggaaattcttacttcnnnnnnntaataataggaaattctttgtcttttccaccctaaattccatctagtggaaaggag |
211 |
Q |
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||| ||||||||||| |||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8438331 |
acataaataaacttttataataggaaattcttcctaaaaaaaaaaaaaaaaaggaaattctttgtcttttccaccctaaattccatctagtggaaaggag |
8438232 |
T |
|
| Q |
212 |
aaatattttcc |
222 |
Q |
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||||||||||| |
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| T |
8438231 |
aaatattttcc |
8438221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 8438217 - 8438160
Alignment:
| Q |
267 |
tagtttagtttttattatggtcggtctacattgttgttt-ttttcttttacattgtct |
323 |
Q |
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|||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
8438217 |
tagtgtagtttttattatggtcggtctaccttgttgttttttttcttttacattgtct |
8438160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 44094758 - 44094804
Alignment:
| Q |
66 |
ataatatagacggaccatgataaaatcagtactcctgtttaatttaa |
112 |
Q |
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||||||||||| ||| |||||||||||||| ||||| |||||||||| |
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| T |
44094758 |
ataatatagacagacaatgataaaatcagtgctcctctttaatttaa |
44094804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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