View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18842_high_5 (Length: 335)
Name: NF18842_high_5
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18842_high_5 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold1940 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 839801 - 840122
Alignment:
| Q |
13 |
aatattctttgtgaataaggccaacttaattaggacgtaaatcatggaatttaatactatcattcattcaaattaaacgaggattactacatcatattcc |
112 |
Q |
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| T |
839801 |
aatattctttgtgaataaggccaacttaattaggacgtaaatcatggaatttaatactatcattcattcaaattaaacgaggattactacatcatattcc |
839900 |
T |
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| Q |
113 |
tcgatctttgtcattaaaacttttagtgccagaatttattttttccttttcaaaaagtaatatattctttgcatcatttcaaaagctcatttatcttaaa |
212 |
Q |
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| T |
839901 |
tcgatctttgtcattaaaacttttagtgccagaattttttttttccttttcaaaaagta-tatattctttgcatcatttcaaaagctcatttatcttaaa |
839999 |
T |
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| Q |
213 |
agattctcaagacaaaaatcttcctattatttaatctgattgatttcttaccaatttgatcttacaaaaccatccaccacaaagcatcctaaattaggtg |
312 |
Q |
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| T |
840000 |
agattctcaagacaaaaatcttcctattatttaatctaattgatttcttaccaatttgatcttacaagaccatccaccacaaagcatcctaaattaggtg |
840099 |
T |
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| Q |
313 |
cttacatttatttcatatgtcca |
335 |
Q |
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| T |
840100 |
cttacatttatttcatatgtcca |
840122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 3533798 - 3533849
Alignment:
| Q |
284 |
atccaccacaaagcatcctaaattaggtgcttacatttatttcatatgtcca |
335 |
Q |
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| T |
3533798 |
atccacaacatagcatcctaaattaggtgcttacatttatttcatatgtcca |
3533849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 12832248 - 12832302
Alignment:
| Q |
281 |
accatccaccacaaagcatcctaaattaggtgcttacatttatttcatatgtcca |
335 |
Q |
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| T |
12832248 |
accatccacaacagagcatcctaaattgggtgcttaaattgaattcatatgtcca |
12832302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 29844917 - 29844958
Alignment:
| Q |
281 |
accatccaccacaaagcatcctaaattaggtgcttacattta |
322 |
Q |
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| T |
29844917 |
accattcacaacaaagcaccctaaattaggtgcttacattta |
29844958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 45548942 - 45548999
Alignment:
| Q |
278 |
aaaaccatccaccacaaagcatcctaaattaggtgcttacatttatttcatatgtcca |
335 |
Q |
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| T |
45548942 |
aaaaccatccacaacatatcaccctaaattaggtgtttatatttattttatatgtcca |
45548999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1940 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1940
Description:
Target: scaffold1940; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 872 - 818
Alignment:
| Q |
281 |
accatccaccacaaagcatcctaaattaggtgcttacatttatttcatatgtcca |
335 |
Q |
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| T |
872 |
accatcctcaacagagcaccctaaattaggtgcttacatttatttcatatgtcca |
818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 21208487 - 21208436
Alignment:
| Q |
281 |
accatccaccacaaagcatcctaaattaggtgcttacatttatttcatatgt |
332 |
Q |
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| T |
21208487 |
accatccacaacagagcaccctaaattaggtgtttacatttatttcatatgt |
21208436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 7186524 - 7186470
Alignment:
| Q |
281 |
accatccaccacaaagcatcctaaattaggtgcttacatttatttcatatgtcca |
335 |
Q |
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| T |
7186524 |
accatccacaaaaaagcatcttaaattaggtgtttacatttatttcatatttcca |
7186470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 6182807 - 6182755
Alignment:
| Q |
281 |
accatccaccacaaagcatcctaaattaggtgcttacatttatttcatatgtc |
333 |
Q |
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| T |
6182807 |
accatccacaacagagcaccctaaactaagtgcttacatttatttcatatgtc |
6182755 |
T |
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