View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18842_high_7 (Length: 299)
Name: NF18842_high_7
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18842_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 54916250 - 54916515
Alignment:
| Q |
16 |
gatacatctagagctacaatggtaacttcagtaaagatggtaaagcaccacaaaacattaagttctactgttgcttgtgcctttataaaaatagtggata |
115 |
Q |
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| T |
54916250 |
gatacatctagagctacaatggtaacttcagtaaagatggtaaagcaccacaaaacattaagttctactgttgcttgtgcctttataaaaatagtggata |
54916349 |
T |
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| Q |
116 |
ttaaagggaagataacgaacttcaaattattaactatatatgcaattaacatatggaaaaaatttgaatccaaaattattagatcaatgagattgtcggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54916350 |
ttaaagggaagataacgaacttcaaattattaactatatatgcaattaacatatggaaaaaatttgaatccaaaattattagatcaatgagattgtcggt |
54916449 |
T |
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| Q |
216 |
cgttgagtctgtgtgtgtaaaagatgtttgcatgttcacgttgtaaattcatagtaattgcatccgat |
283 |
Q |
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| T |
54916450 |
cgttgagtc--tgtgtgtaaaagatgtttgcatgttcacgttgtaaattcatagtaattgcatccgat |
54916515 |
T |
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