View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18842_low_1 (Length: 589)

Name: NF18842_low_1
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18842_low_1
NF18842_low_1
[»] chr1 (21 HSPs)
chr1 (32-513)||(35276384-35276848)
chr1 (126-368)||(35262949-35263196)
chr1 (131-357)||(35270377-35270610)
chr1 (145-368)||(35190329-35190548)
chr1 (151-368)||(35147327-35147540)
chr1 (182-364)||(35199926-35200113)
chr1 (112-360)||(35248194-35248447)
chr1 (285-359)||(35295848-35295921)
chr1 (195-356)||(35224920-35225086)
chr1 (288-359)||(34309455-34309525)
chr1 (305-368)||(45525586-45525649)
chr1 (289-349)||(35212073-35212132)
chr1 (288-358)||(35189417-35189486)
chr1 (288-368)||(35208239-35208318)
chr1 (305-349)||(35476424-35476468)
chr1 (285-356)||(8639004-8639074)
chr1 (305-348)||(35205031-35205074)
chr1 (291-340)||(35194602-35194650)
chr1 (285-350)||(35219167-35219231)
chr1 (284-337)||(35252178-35252230)
chr1 (285-361)||(45531668-45531743)
[»] chr2 (2 HSPs)
chr2 (305-358)||(33138612-33138665)
chr2 (309-361)||(18558741-18558792)
[»] chr3 (6 HSPs)
chr3 (305-355)||(23331914-23331964)
chr3 (305-358)||(17664560-17664613)
chr3 (305-358)||(19246963-19247016)
chr3 (288-359)||(899745-899815)
chr3 (481-513)||(26988237-26988269)
chr3 (303-343)||(53924271-53924311)


Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 32 - 513
Target Start/End: Original strand, 35276384 - 35276848
Alignment:
Q  32 tagttggaacaattcaacggaggcggatatcaacaacacagatatcccaatatatactactatacgaagaaacagtttgtaactccaaattttcaaacat 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35276384 tagttggaacaattcaacggaggcggatatcaacaacacagatatcccaatgtatactactatacgaagaaacagtttgtaactccaaattttcaaacat 35276483  T
Q  132 tgttatgccattcaagacacaagacccgttgcatagctcagtgaattctgcttaattgtgttacttaggcctaatttatatcccttcaagaaagagacca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35276484 tgttatgccattcaagacacaagacccgttgcatagctcagtgaattctgcttaatggtgttacttaggcctaatttatatcccttcaagaaagagacca 35276583  T
Q  232 ctcttccaaccaccctttatctccatcacattcatctgaacttcttcacatttgcctgaattgaagaactccccccatctcaatctccaaccacccatct 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35276584 ctcttccaaccaccctttatctccatcacattcatctgaacttcttcacatttgcctgaattgaagaact-cccccatctcaatctccaaccacccatct 35276682  T
Q  332 cttctcacactaggacgttgcaatcctactgctctgtgctgctcctcaaaattatagtttgttaatgtatttttgtagtattgaagaaccatgaatgaaa 431  Q
    ||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35276683 cttctcacactaggacgttgcaatccta----------------ctcaaaattatagtttgttaatgtatttttgtagtattgaagaaccatgaatgaaa 35276766  T
Q  432 agccaagcaaaatggacaaggctgggttcaaacatatacatcaataataaatttggatgagctaatttgacttcttcaaaac 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35276767 agccaagcaaaatggacaaggctgggttcaaacatatacatcaataataaatttggatgagctaatttgacttcttcaaaac 35276848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 126 - 368
Target Start/End: Original strand, 35262949 - 35263196
Alignment:
Q  126 aaacattgttatgccattcaagacacaagacccgttgcatagctcagtgaattctgcttaattgtgttacttaggcctaatttatatcccttcaagaaag 225  Q
    ||||||| || |||||  ||||||||||||||| ||||||||   ||| ||| |||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  35262949 aaacattattctgccaaccaagacacaagaccccttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaag 35263048  T
Q  226 agaccactcttcca---accaccctttatctccatcacattcatctgaacttcttcacatt---tgcctgaattgaagaactccccccatctcaatctcc 319  Q
    ||||||||||||||   |||| |||||||||| | || ||||||||| |||||||||  ||   |||||||| ||||||||| |||||||||||||||||    
T  35263049 agaccactcttccaattaccagcctttatctctaacaaattcatctggacttcttcattttctatgcctgaactgaagaact-cccccatctcaatctcc 35263147  T
Q  320 aaccacccatctcttctcacactaggacgttgcaatcctactgctctgt 368  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35263148 aaccacccatcgcttctcacactaggacgttgcaatcctactgctctgt 35263196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 131 - 357
Target Start/End: Original strand, 35270377 - 35270610
Alignment:
Q  131 ttgttatgccattcaagacacaagacccgttgcatagctcagtgaattctgcttaattgtgtta--cttaggcctaatttatatcccttcaagaaagaga 228  Q
    ||||| |||||| || ||| |||||||| |||||||| |||||||||  || ||||||||||||  ||||||||||| || ||| ||||||||||  |||    
T  35270377 ttgttctgccatccacgacccaagaccccttgcatagttcagtgaatgttggttaattgtgttatacttaggcctaacttctattccttcaagaactaga 35270476  T
Q  229 ccactcttccaa---ccaccctttatctccatcacattcatctgaacttcttcacatt---tgcctgaattgaagaactccccccatctcaatctccaac 322  Q
    || |||||||||   ||||||||| |||  |||||||||||||| |||||||||  ||   |||||||||||||||||||||| ||||||||||||||||    
T  35270477 cctctcttccaattaccaccctttgtctgtatcacattcatctggacttcttcattttctatgcctgaattgaagaactcccc-catctcaatctccaac 35270575  T
Q  323 cacccatctcttctcacactaggacgttgcaatcc 357  Q
    |||||||| ||||||||||||||||||||||||||    
T  35270576 cacccatcacttctcacactaggacgttgcaatcc 35270610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 145 - 368
Target Start/End: Original strand, 35190329 - 35190548
Alignment:
Q  145 aagacacaagacccgttgcatagctcagtgaattctgcttaattgtgttacttaggcctaatttatatcccttcaagaaagagaccactcttccaaccac 244  Q
    ||||| |||||||| |||||||| |||  ||||  |||| ||| || |||||||||||||| || ||| ||||||||||||||||| |||||||||  |     
T  35190329 aagacgcaagaccccttgcatagttcacggaatgttgctgaatggtcttacttaggcctaacttctattccttcaagaaagagacctctcttccaatta- 35190427  T
Q  245 cctttatctccatcacattcatctgaacttcttcacatttgcctgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactag 344  Q
      ||| ||||| | |||||||| || ||||| ||   |  |||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||    
T  35190428 --tttgtctccttaacattcatttggacttcatcttctaggcctgaattgaagaactctccg-atctcaatctccaaccacccatcacttctcacactag 35190524  T
Q  345 gacgttgcaatcctactgctctgt 368  Q
    ||||||||||||||||||||||||    
T  35190525 gacgttgcaatcctactgctctgt 35190548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 151 - 368
Target Start/End: Original strand, 35147327 - 35147540
Alignment:
Q  151 caagacccgttgcatagctcagtgaattctgcttaattgtgttacttaggcctaatttatatcccttcaagaaagagaccactcttccaaccacccttta 250  Q
    |||||||| |||||||| |||  ||||  |||||||| || |||||||||||||| || ||| ||||||| |||||||||||||||||||  |   |||     
T  35147327 caagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaatta---tttg 35147423  T
Q  251 tctccatcacattcatctgaacttcttcacattt---gcctgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggac 347  Q
    ||||| | ||||||||| | || ||| ||  ||    ||||||||||||   |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  35147424 tctccttaacattcatcaggacgtctccatcttctaggcctgaattgaa---ctcccc-catctcaatctccaaccacccatcgcttctcacactaggac 35147519  T
Q  348 gttgcaatcctactgctctgt 368  Q
    |||||||||||||||||||||    
T  35147520 gttgcaatcctactgctctgt 35147540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 182 - 364
Target Start/End: Original strand, 35199926 - 35200113
Alignment:
Q  182 cttaattgtgttacttaggcctaatttatatcccttcaagaaagagaccactcttccaaccac---cctttatctccatcacattcatctgaacttcttc 278  Q
    ||||||||| |||||||||||| | || ||| |||||||||||||||||||||||| ||  |    | | | ||||| | | |||||| |||||||||||    
T  35199926 cttaattgtcttacttaggcctgacttctattccttcaagaaagagaccactcttcgaattataatcatctgtctcctttatattcatttgaacttcttc 35200025  T
Q  279 acattt---gcctgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcctactgct 364  Q
    |  ||    |||||||||||||||||||||  || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  35200026 atcttcttcgcctgaattgaagaactccccg-atttcaatctccaaccacccatcgcttctcacactagggcgttgcaatcctactgct 35200113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 112 - 360
Target Start/End: Original strand, 35248194 - 35248447
Alignment:
Q  112 aactccaaattttcaaacattgttatgccattcaagacacaagacccgttgcatagctcagtgaattctgcttaattgtgttacttaggcctaatttata 211  Q
    |||| ||||| ||||||| ||||| |||||| ||||||| ||||||| |||||||| |||||||||  ||||||||||| ||||||||| |||| || ||    
T  35248194 aacttcaaatcttcaaacgttgttctgccatccaagacataagaccccttgcatagttcagtgaatgttgcttaattgtattacttaggtctaacttcta 35248293  T
Q  212 tcccttcaagaaagagac---cactcttccaaccaccctttatctccat---cacattcatctgaacttcttcacatttgcctgaattgaagaactcccc 305  Q
    | |||||||  |||||||    | |||    |||| |||| ||||||||    ||||||||||  ||||| |    |  |||| |||||||||||| |||    
T  35248294 ttccttcaaataagagacgtgtattctggttaccatccttcatctccataaaaacattcatcttgacttcattttctaggcctaaattgaagaact-ccc 35248392  T
Q  306 ccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcctac 360  Q
    ||||||||||||| ||||||||||| ||||||||| ||| || ||||||||||||    
T  35248393 ccatctcaatctcaaaccacccatcgcttctcacaatagaactttgcaatcctac 35248447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 35295921 - 35295848
Alignment:
Q  285 gcctgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatccta 359  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  35295921 gcctgaattgaagaactctccc-atctcaatctccaaccacccatcacttctcacactaggctgttgcaatccta 35295848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 195 - 356
Target Start/End: Original strand, 35224920 - 35225086
Alignment:
Q  195 cttaggcctaatttatatcccttcaagaaagagaccactcttccaa---ccaccctttatctccatcacattcatctgaacttcttcacattt---gcct 288  Q
    ||||||||||| || ||| ||||||| ||||| ||| |||||||||   ||||||||||| || || ||| |||| || |||||||||  ||    ||||    
T  35224920 cttaggcctaacttctattccttcaacaaagaaacctctcttccaatgaccaccctttatatcaataacactcatttggacttcttcatcttctaggcct 35225019  T
Q  289 gaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatc 356  Q
    ||| |||||||||| ||| ||||||||||| ||||| ||||| ||||||||| |||||||||||||||    
T  35225020 gaaatgaagaactctccc-atctcaatctctaaccagccatcgcttctcacattaggacgttgcaatc 35225086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 34309455 - 34309525
Alignment:
Q  288 tgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatccta 359  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||    
T  34309455 tgaattgaagaactctccc-atctcaatctccaaccatccatcacttcttacattaggacgttgcaatccta 34309525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 305 - 368
Target Start/End: Original strand, 45525586 - 45525649
Alignment:
Q  305 cccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcctactgctctgt 368  Q
    |||||||||||||||||||||||||| |||||||||| ||||||  ||||||||||| ||||||    
T  45525586 cccatctcaatctccaaccacccatcacttctcacaccaggacgcggcaatcctactactctgt 45525649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 35212073 - 35212132
Alignment:
Q  289 gaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgt 349  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  35212073 gaattgaagaactctccc-atctcaatctccaaccacccatcacttctcacactcggacgt 35212132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 35189417 - 35189486
Alignment:
Q  288 tgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcct 358  Q
    |||||||||||||||||||  || ||||||||||||||| ||| |||||||||| ||||| ||||||||||    
T  35189417 tgaattgaagaactcccccattc-caatctccaaccacctatcacttctcacacaaggacattgcaatcct 35189486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 368
Target Start/End: Original strand, 35208239 - 35208318
Alignment:
Q  288 tgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcctactgctctgt 368  Q
    ||||||||||||||||||  ||||||||||||||||||||||| ||||||||  |||| |||||  || ||||| ||||||    
T  35208239 tgaattgaagaactcccca-atctcaatctccaaccacccatcgcttctcacgttagggcgttgtgatactactactctgt 35208318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 35476424 - 35476468
Alignment:
Q  305 cccatctcaatctccaaccacccatctcttctcacactaggacgt 349  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  35476424 cccatctcaatctccaaccacccatcacgtctcacactaggacgt 35476468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 8639004 - 8639074
Alignment:
Q  285 gcctgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatc 356  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||| |||||||  |||||  |||||||||    
T  8639004 gcctgaattgaagaactctccc-atctcagtctccaaccacccatcacttctcattctaggttgttgcaatc 8639074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 35205031 - 35205074
Alignment:
Q  305 cccatctcaatctccaaccacccatctcttctcacactaggacg 348  Q
    |||||||||||||||||||||||||| ||||||||| |||||||    
T  35205031 cccatctcaatctccaaccacccatcacttctcacattaggacg 35205074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 35194602 - 35194650
Alignment:
Q  291 attgaagaactccccccatctcaatctccaaccacccatctcttctcaca 340  Q
    |||||||||||||||| || |||||||||||||||||||| |||||||||    
T  35194602 attgaagaactccccc-atttcaatctccaaccacccatcgcttctcaca 35194650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 35219167 - 35219231
Alignment:
Q  285 gcctgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgtt 350  Q
    ||||||| |||||||||| ||| |||||| | ||||||||| |||| ||||||| |||||||||||    
T  35219167 gcctgaaatgaagaactctccc-atctcagtttccaaccactcatcacttctcatactaggacgtt 35219231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 35252178 - 35252230
Alignment:
Q  284 tgcctgaattgaagaactccccccatctcaatctccaaccacccatctcttctc 337  Q
    ||||| ||||||||||||||||  ||||||||||| ||||||||||| ||||||    
T  35252178 tgcctaaattgaagaactcccca-atctcaatctcaaaccacccatcacttctc 35252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 45531668 - 45531743
Alignment:
Q  285 gcctgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcctact 361  Q
    |||||||||||||||||| ||| |||||||||||| |||||| | | ||||||  |||||| ||  |||||||||||    
T  45531668 gcctgaattgaagaactctccc-atctcaatctcccaccacctaccacttctccaactaggccgcggcaatcctact 45531743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 33138665 - 33138612
Alignment:
Q  305 cccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcct 358  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  33138665 cccatctcaatctccaaccacccatcacttctcacagtaggacgctgcaatcct 33138612  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 18558792 - 18558741
Alignment:
Q  309 tctcaatctccaaccacccatctcttctcacactaggacgttgcaatcctact 361  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||||||||    
T  18558792 tctcaatctccaaccacccatcacgtctcacactaggac-ttgcaatcctact 18558741  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 23331914 - 23331964
Alignment:
Q  305 cccatctcaatctccaaccacccatctcttctcacactaggacgttgcaat 355  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  23331914 cccatctcaatctccaaccacccatcgcttctcacattaggacgatgcaat 23331964  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 17664613 - 17664560
Alignment:
Q  305 cccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcct 358  Q
    |||||||||||||||||||| ||||| | ||| |||||||||||||||||||||    
T  17664613 cccatctcaatctccaaccatccatcacatctaacactaggacgttgcaatcct 17664560  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 19247016 - 19246963
Alignment:
Q  305 cccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatcct 358  Q
    |||||||||||||||||||| ||||| | ||| |||||||||||||||||||||    
T  19247016 cccatctcaatctccaaccatccatcacatctaacactaggacgttgcaatcct 19246963  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 899815 - 899745
Alignment:
Q  288 tgaattgaagaactccccccatctcaatctccaaccacccatctcttctcacactaggacgttgcaatccta 359  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||| |||||||   |||| || ||||||||||    
T  899815 tgaattgaataactctccc-atctcaatctccaaccacccatcgcttctcatggtagggcgctgcaatccta 899745  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 513
Target Start/End: Original strand, 26988237 - 26988269
Alignment:
Q  481 aatttggatgagctaatttgacttcttcaaaac 513  Q
    ||||||||||||||||||| |||||||||||||    
T  26988237 aatttggatgagctaatttaacttcttcaaaac 26988269  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 53924311 - 53924271
Alignment:
Q  303 cccccatctcaatctccaaccacccatctcttctcacacta 343  Q
    |||||||||||||||||||||||||||| || |||| ||||    
T  53924311 cccccatctcaatctccaaccacccatcgctcctcaaacta 53924271  T

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