View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18842_low_13 (Length: 239)
Name: NF18842_low_13
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18842_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 41785105 - 41785311
Alignment:
| Q |
15 |
gatgaaaatggagcttcaatggagatcatggctttaaaagctgaagttaatgacatgaggctagcgttggacaatttgcaggaacataaaaccaagttgg |
114 |
Q |
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| T |
41785105 |
gatgaaaatggagcttcaattgagattatggctttaaaagctgaagttaatgacatgaggctagcgttggacaatttgcaggaacataaaaccaagttgg |
41785204 |
T |
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| Q |
115 |
aactccagaatgagcgaaaccagaaggaatatgcagaaagcttagcaaagatagaaactttgaacacaaagttgacaggccagatagctgatcaagagaa |
214 |
Q |
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| T |
41785205 |
aactccagaatgagcgaaaccagaaggaatatgcagaaagcttagcaaagatagaaactttgaacacaaagttgacaggccagatagctgatcaagagaa |
41785304 |
T |
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| Q |
215 |
aactata |
221 |
Q |
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||||||| |
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| T |
41785305 |
aactata |
41785311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 10834329 - 10834530
Alignment:
| Q |
18 |
gaaaatggagcttcaatggagatcatggctttaaaagctgaagttaatgacatgaggctagcgttggacaatttgcaggaacataaaaccaagttggaac |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| || || || ||||| |||| ||||| |||||| || | |
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| T |
10834329 |
gaaaatggagcttcgatggagatcatggctttaaaagctgaagttaatgacatgggactagatttcgataacttgcatgaac-taaaatcaagttcgagc |
10834427 |
T |
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| Q |
118 |
tccagaatgagcgaaaccagaaggaatatgcagaaagcttagcaaagatagaaactttgaacacaaagttgacaggccagatagctgatcaagagaaaac |
217 |
Q |
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|| |||||||||||||||||| | ||||| |||||| | |||||| | |||| ||| | ||||||||| || |||||||||||||| ||||| ||| |
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| T |
10834428 |
tctcaaatgagcgaaaccagaagcagtatgctgaaagcctggcaaaggtggaaaatttaaccacaaagtttgcaacccagatagctgatc-agagataac |
10834526 |
T |
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| Q |
218 |
tata |
221 |
Q |
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|||| |
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| T |
10834527 |
tata |
10834530 |
T |
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