View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18842_low_15 (Length: 237)
Name: NF18842_low_15
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18842_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 3343294 - 3343074
Alignment:
| Q |
17 |
attatgtgatttgcctaagcctagcaaacaacttcatctgtcatgcttgaaagtttttcagatgtttttcaactccaaaaacagatttgactctaataca |
116 |
Q |
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| T |
3343294 |
attatgtgatttgcctaagcctagcaaacaacttcatctgtcatgcttgaaagtttttcagatgtttttcaactccaaaaacagatttgactccaataca |
3343195 |
T |
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| Q |
117 |
gaattggtggaggatataaacaaagcaatatatcttcctttgaatagaactacgaagtgtctttcatctcaagcattcccaaagaagaaacatattgtag |
216 |
Q |
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| T |
3343194 |
gaattggtggaggatataaacaaagcaatatatcttcctttgaatagaactacgaagtgtctttcatctcaagcattcccaaagaagaaacatattgtag |
3343095 |
T |
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| Q |
217 |
caaatcttcatgtaaatttcc |
237 |
Q |
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|||||||| |||||||||||| |
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| T |
3343094 |
caaatcttaatgtaaatttcc |
3343074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 3367778 - 3367589
Alignment:
| Q |
21 |
tgtgatttgcctaagcctagcaaacaacttcatctgtcatgcttgaaagtttttcagatgtttttcaactccaaaaacagatttgactctaatacagaat |
120 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||| | |
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| T |
3367778 |
tgtgatttacctaaacctagcaaacaacttcatctcgcatgcttgaaagtttttgagatgttttacaactccaaaaatagatttgattctaatacagatt |
3367679 |
T |
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| Q |
121 |
tggtggaggatataaacaaagcaatatatcttcctttgaatagaactacgaagtgtctttcatctcaagcattcccaaagaagaaacata |
210 |
Q |
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| T |
3367678 |
tggttgaagatataaacaaagcaatatatcttcctttgggtagaactacaaagtgtttttcacctcaaacattcccaaagaagaaacata |
3367589 |
T |
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