View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18842_low_2 (Length: 570)
Name: NF18842_low_2
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18842_low_2 |
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| [»] scaffold1485 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 179 - 546
Target Start/End: Complemental strand, 4851208 - 4850864
Alignment:
| Q |
179 |
aaaggttccttagaaccaaaggtaactccaacataacatattggtaacatccctaaggcagaaaacaacattaatttaatattagaaaacattattggaa |
278 |
Q |
| |
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||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
4851208 |
aaaggtttcttagcactaaaggtaactccaacataacaaattggtaacatccctaaggcagaaaacaacattaatttaatattggaaaacattattgaga |
4851109 |
T |
|
| Q |
279 |
aaacaaccatttttctccttaaaagtgtaccaagatgtaattttggtcaatgacttagataaaacccgaattaaatccttcactcctttgttcttagtta |
378 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||||||||| |
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| T |
4851108 |
aaacaaccatttttctccttaaaagtgtaacaagatgtaattttggtcaatgacttagataaaatccgaattaaatcattcact-ctttggtcttagtta |
4851010 |
T |
|
| Q |
379 |
ctttagtcattgaagtcaaccaagacgtttacttaatcaaaattagtcaaaagcttcacaagcttataacttataaccctgtttggtaaccccttatatg |
478 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
4851009 |
ctttagtcattgaagtcaaccaagacgttttct----------------------tcacaagcttataacttgtaaccctatttggtaaccccttatatg |
4850932 |
T |
|
| Q |
479 |
tttatctaaaaaccaattttaccctttgaagtttattataatttaatcaaatagttcaatgttacgtt |
546 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |
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| T |
4850931 |
tttatctaaaaaccaattttaccctttgaagtttattataatttaataaaattgttcaatgttccgtt |
4850864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 179 - 430
Target Start/End: Complemental strand, 4855545 - 4855295
Alignment:
| Q |
179 |
aaaggttccttagaaccaaaggtaactccaacataacatattggtaacatccctaaggcagaaaacaacattaatttaatattagaaaacattattggaa |
278 |
Q |
| |
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||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
4855545 |
aaaggtttcttagcactaaaggtaactccaacataacaaattggtaacatccctaaggcagaaaacaacattaatttaatattggaaaacattattggga |
4855446 |
T |
|
| Q |
279 |
aaacaaccatttttctccttaaaagtgtaccaagatgtaattttggtcaatgacttagataaaacccgaattaaatccttcactcctttgttcttagtta |
378 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
4855445 |
aaacaaccatttttctccttaaaagtgtaacaagatgtaattttggtcaatgacttagataaaacccgaattaaatcattcact-ctttgttcttagtta |
4855347 |
T |
|
| Q |
379 |
ctttagtcattgaagtcaaccaagacgtttacttaatcaaaattagtcaaaa |
430 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4855346 |
ctttagtcattgaagtcaactaagacgtttacttaatcaaaattagtcaaaa |
4855295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 179 - 430
Target Start/End: Complemental strand, 4877280 - 4877030
Alignment:
| Q |
179 |
aaaggttccttagaaccaaaggtaactccaacataacatattggtaacatccctaaggcagaaaacaacattaatttaatattagaaaacattattggaa |
278 |
Q |
| |
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||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
4877280 |
aaaggtttcttagcactaaaggtaactccaacataacaaattggtaacatccctaaggcagaaaacaacattaatttaatattggaaaacattattggga |
4877181 |
T |
|
| Q |
279 |
aaacaaccatttttctccttaaaagtgtaccaagatgtaattttggtcaatgacttagataaaacccgaattaaatccttcactcctttgttcttagtta |
378 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
4877180 |
aaacaaccatttttctccttaaaagtgtaacaagatgtaattttggtcaatgacttagataaaacccgaattaaatcattcact-ctttgttcttagtta |
4877082 |
T |
|
| Q |
379 |
ctttagtcattgaagtcaaccaagacgtttacttaatcaaaattagtcaaaa |
430 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4877081 |
ctttagtcattgaagtcaactaagacgtttacttaatcaaaattagtcaaaa |
4877030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 222 - 430
Target Start/End: Complemental strand, 4841282 - 4841072
Alignment:
| Q |
222 |
gtaacatccctaaggcagaaaacaacattaatttaatattagaaaacattattggaaaaacaaccatttttctccttaaaagtgtaccaagatgtaattt |
321 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
4841282 |
gtaacatccctaaggcataaaacaactgtaatttaatattggaaaacattattggaaaaacaaccatttttctccttaaaagtgtaacaagatttaattt |
4841183 |
T |
|
| Q |
322 |
tggtcaatgacttagataaaacccgaattaaatccttcactcctt-tgttcttagttactttagtcattgaagtcaaccaagacgtttactt-aatcaaa |
419 |
Q |
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||||| | ||||| ||||||| | ||||||||||||||||| || | |||||||||||||||||||| ||||||| ||| |||||||||| ||||||| |
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| T |
4841182 |
tggtccacgacttgaataaaacgccaattaaatccttcactctttattctcttagttactttagtcattaaagtcaatcaaaacgtttacttaaatcaaa |
4841083 |
T |
|
| Q |
420 |
attagtcaaaa |
430 |
Q |
| |
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| |||| |||| |
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| T |
4841082 |
actagtaaaaa |
4841072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 193 - 430
Target Start/End: Complemental strand, 4834583 - 4834340
Alignment:
| Q |
193 |
accaaaggtaactccaacataacata----ttggtaacatccctaaggcagaaaacaacattaatttaatattagaaaacattattggaaaaacaaccat |
288 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
4834583 |
accaaaggtaactccaacccaacaaattggttggtaacatccctaaggcataaataaactttaatttaatattggaaaacattattggaaaaacaaccat |
4834484 |
T |
|
| Q |
289 |
ttttctccttaaaagtgtaccaagatgtaattttggtcaatgacttagataaaacccgaattaaatccttcactcctt-tgttcttagttactttagtca |
387 |
Q |
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||||||||||| ||||||| || ||| ||||||||||| | ||||| ||||||| | ||||||||||||||||| || | |||||||||||||||||| |
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| T |
4834483 |
ttttctccttagaagtgtaacatgatttaattttggtccacgacttgaataaaacgccaattaaatccttcactctttattctcttagttactttagtca |
4834384 |
T |
|
| Q |
388 |
ttgaagtcaaccaagacgtttactt-aatcaaaattagtcaaaa |
430 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||| |||| |||| |
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| T |
4834383 |
ttgaagtcaatcaaaacgtttacttaaatcaaaactagtaaaaa |
4834340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 446 - 546
Target Start/End: Complemental strand, 4854980 - 4854880
Alignment:
| Q |
446 |
aacttataaccctgtttggtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattataatttaatcaaatagttcaatgttacgt |
545 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
4854980 |
aacttgtaaccctttttagtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgt |
4854881 |
T |
|
| Q |
546 |
t |
546 |
Q |
| |
|
| |
|
|
| T |
4854880 |
t |
4854880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 446 - 546
Target Start/End: Complemental strand, 4876715 - 4876615
Alignment:
| Q |
446 |
aacttataaccctgtttggtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattataatttaatcaaatagttcaatgttacgt |
545 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
4876715 |
aacttgtaaccctttttagtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgt |
4876616 |
T |
|
| Q |
546 |
t |
546 |
Q |
| |
|
| |
|
|
| T |
4876615 |
t |
4876615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 434 - 541
Target Start/End: Complemental strand, 4834068 - 4833963
Alignment:
| Q |
434 |
tcacaagcttataacttataaccctgtttggtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattataatttaatcaaatagt |
533 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
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| T |
4834068 |
tcacaagcttataacttataactctgcttggtaatcccttat--gattatctaaaaaccaattttaccctttgaagtttattataatttcataaaacagt |
4833971 |
T |
|
| Q |
534 |
tcaatgtt |
541 |
Q |
| |
|
|||||||| |
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| T |
4833970 |
tcaatgtt |
4833963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 4872960 - 4872885
Alignment:
| Q |
471 |
cttatatgtttatctaaaaaccaattttaccctttgaagtttattataatttaatcaaatagttcaatgttacgtt |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
4872960 |
cttatatgtttatctaaaaaccaattttaccctttgaagtttattataatttaataacatagttcaatgttacgtt |
4872885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 4841339 - 4841285
Alignment:
| Q |
52 |
aggttttgcatctttcatatttacctccaaaaaccgtatttacattatcaattaa |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
4841339 |
aggttttgcatctttcttatttacctccaaaaaccttatttaagttatcaattaa |
4841285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 4825972 - 4825919
Alignment:
| Q |
52 |
aggttttgcatctttcatatttacctccaaaaaccgtatttacattatcaatta |
105 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||| ||||||||||||||||| |
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|
| T |
4825972 |
aggtttagcatctttcttgtttacctccaaaaacatcatttacattatcaatta |
4825919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1485 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold1485
Description:
Target: scaffold1485; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 446 - 546
Target Start/End: Original strand, 13 - 113
Alignment:
| Q |
446 |
aacttataaccctgtttggtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattataatttaatcaaatagttcaatgttacgt |
545 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
13 |
aacttgtaaccctttttagtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgt |
112 |
T |
|
| Q |
546 |
t |
546 |
Q |
| |
|
| |
|
|
| T |
113 |
t |
113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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