View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18842_low_3 (Length: 405)
Name: NF18842_low_3
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18842_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 51729248 - 51728873
Alignment:
| Q |
19 |
aggcttggcatttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggattatg |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729248 |
aggcttggcatttcaaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggattatg |
51729149 |
T |
|
| Q |
119 |
catcatgtcaaatggctataatgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729148 |
catcatgtcaaatggctataatgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatga |
51729049 |
T |
|
| Q |
219 |
aggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaagatcaaaaccattttaccagag |
318 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51729048 |
aggaatcgaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttaatggaaagaaaaagatcaaaaccattttaccagag |
51728949 |
T |
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| Q |
319 |
cctttttgtagcctgttggagtacccctctggccttatacctttgtacaggtaagaagtacttgtttgtgattcat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51728948 |
cctttttgtagcctgttggagtacccctctggccttatacctttgtacaggtaagaagtacttgtttgtgattcat |
51728873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 19056566 - 19056891
Alignment:
| Q |
19 |
aggcttggcatttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggattatg |
118 |
Q |
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||||||| ||||| |||||||| ||||||||| | || |||||| ||||||| |||||||||| || ||||||||||||||||||| ||| |||| || |
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| T |
19056566 |
aggcttgtgatttcaaagttcatagagtcctacttgctttggaaacttccattagagaagtatgggttgaaaccagaacacccttttgaggaagattttg |
19056665 |
T |
|
| Q |
119 |
catcatgtcaaatggctataatgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatga |
218 |
Q |
| |
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|||| |||||||| ||||||| ||||||| ||| ||| |||| || ||||| ||||| | | |||| ||||||||||||||| ||||| |||| |
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| T |
19056666 |
catcttgtcaaatagctataacaccagaaagttttttcaatgaggctgataaaggtaaaataatcttcaaaagagcatcaaagtggtgtttttggaatgg |
19056765 |
T |
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| Q |
219 |
aggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaagatcaaaaccattttaccagag |
318 |
Q |
| |
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|||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| |||||| || || ||| ||||||||||||| |||||| |
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| T |
19056766 |
aggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatgggaaaaagaagctcaaaaccattttgccagag |
19056865 |
T |
|
| Q |
319 |
cctttttgtagcctgttggagtaccc |
344 |
Q |
| |
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||||||| |||| ||||||| ||||| |
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| T |
19056866 |
cctttttctagcttgttggaataccc |
19056891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 19188633 - 19188308
Alignment:
| Q |
19 |
aggcttggcatttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggattatg |
118 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| | || |||||| ||||||| |||||||||| || ||||||||||||||||||| ||| |||| || |
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| T |
19188633 |
aggcttgtgatttcaaagttcatagagtcctacttgctatggaaacttccattagagaagtatgggttgaaaccagaacacccttttgaggaagattttg |
19188534 |
T |
|
| Q |
119 |
catcatgtcaaatggctataatgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatga |
218 |
Q |
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|||| |||||||| ||||||| ||||||| ||| ||| |||| || ||||| ||||| | | |||| ||||||||||||||| ||||| |||| |
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| T |
19188533 |
catcttgtcaaatagctataacaccagaaagttttttcaatgaggctgataaaggtaaaataatcttcaaaagagcatcaaagtggtgtttttggaatgg |
19188434 |
T |
|
| Q |
219 |
aggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaagatcaaaaccattttaccagag |
318 |
Q |
| |
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|||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| |||||| || || ||| ||||||||||||| |||||| |
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| T |
19188433 |
aggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatgggaaaaagaagctcaaaaccattttgccagag |
19188334 |
T |
|
| Q |
319 |
cctttttgtagcctgttggagtaccc |
344 |
Q |
| |
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||||||| |||| ||||||| ||||| |
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| T |
19188333 |
cctttttctagcttgttggaataccc |
19188308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 6895797 - 6895696
Alignment:
| Q |
28 |
atttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggattatgcatcatgtc |
127 |
Q |
| |
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||||| |||||||| ||||| ||| | || |||||| ||||||| ||||| |||| || || ||||| ||| | |||| ||||||||||||||| |||| |
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| T |
6895797 |
atttcaaagttcatagagtcttacttgctttggaaacttccattagagaaatatggattgaagccagatcactcatttgaggaggattatgcatcttgtc |
6895698 |
T |
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| Q |
128 |
aa |
129 |
Q |
| |
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|| |
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|
| T |
6895697 |
aa |
6895696 |
T |
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