View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18842_low_7 (Length: 320)

Name: NF18842_low_7
Description: NF18842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18842_low_7
NF18842_low_7
[»] chr2 (10 HSPs)
chr2 (18-162)||(840300-840444)
chr2 (276-319)||(840138-840181)
chr2 (79-180)||(9032699-9032802)
chr2 (79-142)||(9548463-9548526)
chr2 (79-180)||(19494731-19494834)
chr2 (83-192)||(7315343-7315456)
chr2 (79-135)||(6190218-6190274)
chr2 (79-133)||(5732558-5732612)
chr2 (79-133)||(5803076-5803130)
chr2 (110-188)||(38935059-38935140)
[»] chr4 (14 HSPs)
chr4 (79-192)||(36755111-36755226)
chr4 (79-216)||(16529829-16529968)
chr4 (79-192)||(3534018-3534134)
chr4 (79-135)||(38476307-38476363)
chr4 (81-180)||(28992645-28992745)
chr4 (82-192)||(56192216-56192328)
chr4 (74-155)||(37996899-37996982)
chr4 (79-171)||(12832428-12832522)
chr4 (90-158)||(45549183-45549253)
chr4 (80-192)||(46433203-46433316)
chr4 (79-131)||(13205719-13205771)
chr4 (81-128)||(55693133-55693180)
chr4 (79-162)||(44516076-44516161)
chr4 (276-308)||(3533882-3533914)
[»] scaffold0001 (1 HSPs)
scaffold0001 (79-192)||(428284-428398)
[»] chr6 (6 HSPs)
chr6 (79-211)||(32183774-32183908)
chr6 (84-211)||(21208156-21208285)
chr6 (79-192)||(15135023-15135139)
chr6 (79-218)||(20969721-20969862)
chr6 (101-192)||(15489397-15489490)
chr6 (82-162)||(22746975-22747056)
[»] chr7 (12 HSPs)
chr7 (79-192)||(1910964-1911078)
chr7 (83-158)||(16706687-16706763)
chr7 (83-158)||(17680923-17680999)
chr7 (83-192)||(35015874-35015985)
chr7 (89-192)||(1706545-1706650)
chr7 (78-141)||(25026708-25026772)
chr7 (83-142)||(35016083-35016143)
chr7 (79-214)||(12287079-12287214)
chr7 (79-126)||(41853369-41853416)
chr7 (110-189)||(965262-965343)
chr7 (86-127)||(2485432-2485473)
chr7 (79-127)||(27743810-27743858)
[»] scaffold1940 (1 HSPs)
scaffold1940 (79-192)||(548-663)
[»] chr1 (13 HSPs)
chr1 (79-211)||(8259434-8259568)
chr1 (80-162)||(48379474-48379557)
chr1 (89-162)||(15342872-15342946)
chr1 (79-162)||(14624968-14625053)
chr1 (82-208)||(16255433-16255560)
chr1 (101-211)||(33737260-33737371)
chr1 (82-132)||(48941592-48941642)
chr1 (79-128)||(51776544-51776593)
chr1 (82-142)||(9694111-9694171)
chr1 (79-192)||(29700951-29701066)
chr1 (89-142)||(43728651-43728705)
chr1 (89-134)||(25389757-25389802)
chr1 (110-217)||(24120317-24120426)
[»] chr8 (6 HSPs)
chr8 (79-218)||(7186185-7186326)
chr8 (74-192)||(8845551-8845671)
chr8 (89-211)||(37127627-37127751)
chr8 (80-192)||(41407196-41407310)
chr8 (90-211)||(40216364-40216486)
chr8 (92-188)||(34474412-34474509)
[»] chr5 (5 HSPs)
chr5 (79-214)||(19279428-19279565)
chr5 (79-192)||(23418860-23418975)
chr5 (79-135)||(9622420-9622476)
chr5 (90-158)||(27903561-27903630)
chr5 (79-191)||(43100926-43101039)
[»] chr3 (6 HSPs)
chr3 (83-192)||(26952523-26952634)
chr3 (83-192)||(37333177-37333288)
chr3 (79-133)||(18090363-18090417)
chr3 (79-192)||(29078890-29079004)
chr3 (79-132)||(1102787-1102840)
chr3 (80-192)||(20936141-20936254)
[»] scaffold0281 (1 HSPs)
scaffold0281 (79-142)||(22272-22335)
[»] scaffold0039 (1 HSPs)
scaffold0039 (145-192)||(101630-101677)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 840444 - 840300
Alignment:
Q  18 tggtgtacattaattaatcatgatcttgtcataatcggctttaannnnnnnaaaaatctttgaccatccataatggtgggtgcttcatctacttagcacc 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||       ||||||||| |||||| || |||||||||||||||| ||||||||||||    
T  840444 tggtgtatattaattaatcatgatcttgtcataatcggctttaatttttttaaaaatcttagaccattcacaatggtgggtgcttcacctacttagcacc 840345  T
Q  118 acattaaatagacaccccattgtgggaataatatatgggtggcta 162  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||    
T  840344 acattaaataggcaccccattgtaagaataatatatgggtggcta 840300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 840181 - 840138
Alignment:
Q  276 ttattttgaggtgttgggttgaagaaaaatggttaagtattatc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  840181 ttattttgaggtgttgggttgaagaaaaatggttaagtattatc 840138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 9032802 - 9032699
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacc-ccattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||||||||||||||| ||| ||| ||||||||||||||| |||| | ||| ||| | |||||| ||||||||||| ||||||| |||||    
T  9032802 gaccatccaaaatggtgggtgcttcacctatttaacaccacattaaataggcacctctattatggagtataatacatgggtggctatggagaagggtggc 9032703  T
Q  177 tatg 180  Q
    ||||    
T  9032702 tatg 9032699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 9548463 - 9548526
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg 142  Q
    ||||||| | |||||||| ||||| | ||| |||||||||||||||||||||||||||||||||    
T  9548463 gaccatctacaatggtggatgcttaacctatttagcaccacattaaatagacaccccattgtgg 9548526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 19494731 - 19494834
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||| ||| ||||||||||| |||| |||| ||||||||| || ||||||||||| | |||||||||||||| ||| ||||||  |||||    
T  19494731 gaccatccacaatgatggatgcttcatctatttagtaccatattaaataggcacccccattgtggagtataatatatgggtgactatggagaatggtggc 19494830  T
Q  177 tatg 180  Q
    ||||    
T  19494831 tatg 19494834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 7315456 - 7315343
Alignment:
Q  83 atccataatggtgggtgcttcatc--tacttagcaccacattaaatagacaccc-cattgtgg-gaataatatatgggtggctacggagaagagtggcta 178  Q
    ||||| ||||||||||||||||    || |||||||||  |||||||||||||| |||||||| | |||||| ||||||||||| ||||||| ||| |||    
T  7315456 atccacaatggtgggtgcttcacacatatttagcaccatgttaaatagacaccctcattgtggagtataatacatgggtggctatggagaagggtgacta 7315357  T
Q  179 tgaaaacaccctct 192  Q
    || || ||||||||    
T  7315356 tggaagcaccctct 7315343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 6190274 - 6190218
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacccc 135  Q
    ||||||||| |||||||||||||||| ||  |||||| || ||||||||||||||||    
T  6190274 gaccatccacaatggtgggtgcttcacctgtttagcatcatattaaatagacacccc 6190218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 5732558 - 5732612
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacc 133  Q
    |||||||||||||  ||||||||| | ||| ||||||||||||||||||| ||||    
T  5732558 gaccatccataataatgggtgcttaacctatttagcaccacattaaataggcacc 5732612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 5803076 - 5803130
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacc 133  Q
    |||||||||||||  ||||||||| | ||| ||||||||||||||||||| ||||    
T  5803076 gaccatccataataatgggtgcttaacctatttagcaccacattaaataggcacc 5803130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 38935059 - 38935140
Alignment:
Q  110 ttagcaccacattaaatagacaccc--cattgtgg-gaataatatatgggtggctacggagaagagtggctatgaaaacacc 188  Q
    |||||||||||||||||| ||||||  |||||||| | |||||||||||||| ||| ||||||  |||| ||||||| ||||    
T  38935059 ttagcaccacattaaataaacacccctcattgtggagtataatatatgggtgtctagggagaatggtggttatgaaagcacc 38935140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 36755111 - 36755226
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacc-ccattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| | |||||||||||||||||| ||||||| |||||    
T  36755111 gaccatccacaatggtgggtgcttcatctatttagcaccatattaaatagacacctccattgtggagtataatatatgggtggctatggagaagggtggc 36755210  T
Q  177 tatgaaaacaccctct 192  Q
    |||| || ||||||||    
T  36755211 tatggaagcaccctct 36755226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 16529829 - 16529968
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||||||| || ||||||||||| | |||||| ||||||||||| ||||||  |||||    
T  16529829 gaccatccacaatggtgggtgcttcacctatttagcaccacattaaataggcacccccattgtggagtataatacatgggtggctatggagaatggtggc 16529928  T
Q  177 tatgaaaacaccctcttattcttcagttttcatggatccc 216  Q
    |||| || |||| |||   |||||| ||||||||| ||||    
T  16529929 tatggaagcaccatctctctcttcatttttcatgggtccc 16529968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 3534134 - 3534018
Alignment:
Q  79 gaccatccataatggtggg-tgcttcatctacttagcaccacattaaatagacacccc-attgtgg-gaataatatatgggtggctacggagaagagtgg 175  Q
    ||||||||| || |||||| ||||||| ||| |||||| |||||||||||| |||||| ||||||| |||||||||||||||||||| ||||| | ||||    
T  3534134 gaccatccacaacggtggggtgcttcacctatttagcatcacattaaataggcacccccattgtggagaataatatatgggtggctatggagatgggtgg 3534035  T
Q  176 ctatgaaaacaccctct 192  Q
    |||||||| ||| ||||    
T  3534034 ctatgaaagcactctct 3534018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 38476363 - 38476307
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacccc 135  Q
    ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  38476363 gaccatctataatggtgggtgcttcacctatttagcaccacattaaatagacacccc 38476307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 28992745 - 28992645
Alignment:
Q  81 ccatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtggctacggagaagagtggctat 179  Q
    ||||||| ||| |||||||||||| ||| ||||||||| | ||||||||||||||||||||| | ||||||| || |||  |||||||||| ||| ||||    
T  28992745 ccatccacaattgtgggtgcttcacctatttagcaccatactaaatagacaccccattgtggagtataatatttgagtgtgtacggagaagggtgactat 28992646  T
Q  180 g 180  Q
    |    
T  28992645 g 28992645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 56192216 - 56192328
Alignment:
Q  82 catccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggctat 179  Q
    |||||| |||||||||||||| | ||| ||| ||||||||||||||| || |||| |||||| | | |||||||||||| |||  |||||| ||||||||    
T  56192216 catccacaatggtgggtgctttacctatttaacaccacattaaataggcacccccgttgtggagtaaaatatatgggtgtctatagagaagggtggctat 56192315  T
Q  180 gaaaacaccctct 192  Q
    |||| ||||||||    
T  56192316 gaaagcaccctct 56192328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 37996899 - 37996982
Alignment:
Q  74 tctttgaccatccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgg 155  Q
    |||| ||||||||| |||||||| |||||| |||| |||||||||||||||||||||| || |||||||| | |||||||||||    
T  37996899 tcttagaccatccacaatggtggatgcttcttctatttagcaccacattaaatagacatcctcattgtggagtataatatatgg 37996982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 12832522 - 12832428
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacccc-attgtgg-gaataatatatgggtggctacggagaaga 171  Q
    ||||||| | |||||||||||||||| ||| ||||||||||||||||| | |||||| ||||||| | |||||| ||||||||||| | ||||||    
T  12832522 gaccatctacaatggtgggtgcttcacctatttagcaccacattaaatcggcacccctattgtggagtataatacatgggtggctatgaagaaga 12832428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 45549253 - 45549183
Alignment:
Q  90 atggtgggtgcttcatctacttagcaccacattaaatagacacc-ccattgt-gggaataatatatgggtg 158  Q
    |||||||||| |||| ||| |||||||||||||||||||||||| ||||||| | ||||||||||||||||    
T  45549253 atggtgggtgtttcacctatttagcaccacattaaatagacacctccattgtagagaataatatatgggtg 45549183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 46433316 - 46433203
Alignment:
Q  80 accatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtggctacggagaagagtggcta 178  Q
    |||||||| |||| ||||||||| | ||| |||||||||| ||||||||  |||||||||||| | |  ||||||||||| ||| ||||||| || ||||    
T  46433316 accatccacaatgatgggtgcttaacctatttagcaccactttaaataggtaccccattgtggagcaatatatatgggtgcctatggagaagggtagcta 46433217  T
Q  179 tgaaaacaccctct 192  Q
    || || ||||||||    
T  46433216 tggaagcaccctct 46433203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 13205771 - 13205719
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagaca 131  Q
    ||||||||| |||||||||||||| | ||| |||| |||||||||||||||||    
T  13205771 gaccatccacaatggtgggtgcttaacctatttagtaccacattaaatagaca 13205719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 55693180 - 55693133
Alignment:
Q  81 ccatccataatggtgggtgcttcatctacttagcaccacattaaatag 128  Q
    ||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  55693180 ccatccacaatgatggatgcttcatctatttagcaccacattaaatag 55693133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 44516161 - 44516076
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacccc-attgtggga-ataatatatgggtggcta 162  Q
    ||||||||| |||| ||  ||||||| ||| |||||||||||||||||| |||||||  |||||| | |||||| |||||||||||    
T  44516161 gaccatccaaaatgatgaatgcttcacctatttagcaccacattaaataaacacccctgttgtggaatataatacatgggtggcta 44516076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 3533914 - 3533882
Alignment:
Q  276 ttattttgaggtgttgggttgaagaaaaatggt 308  Q
    ||||||||||||||||||||| |||||||||||    
T  3533914 ttattttgaggtgttgggttggagaaaaatggt 3533882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 428284 - 428398
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtggctacggagaagagtggct 177  Q
    ||||||||| |||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||| | |||||| ||||||||||| ||||||| ||||||    
T  428284 gaccatccacaatggtgggtgcttcacctatttagcaccagattaaataggcaccccattgtggagtataatacatgggtggctatggagaagggtggct 428383  T
Q  178 atgaaaacaccctct 192  Q
    ||| || ||||||||    
T  428384 atggaagcaccctct 428398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 32183774 - 32183908
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||||||||||||||||||| |||||| || ||||||||| || ||||||||||| | |||||||||||||||||| ||||||  |||||    
T  32183774 gaccatccacaatggtgggtgcttcatctatttagcatcatattaaataggcacccccattgtggagtataatatatgggtggctatggagaacggtggc 32183873  T
Q  177 tatgaaaacaccctcttattcttcagttttcatgg 211  Q
    |||| || ||||||||  ||||||| |||||||||    
T  32183874 tatggaagcaccctctctttcttcatttttcatgg 32183908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 21208156 - 21208285
Alignment:
Q  84 tccataatggtgggtgcttcatctacttagcaccacattaaatagacacccc-attgtgg-gaataatatatgggtggctacggagaagagtggctatga 181  Q
    |||| ||||||| |||||||| ||| ||| ||||  ||||||||| |||||  ||||||| |||||||||||||||||||| |||||||||||||||||     
T  21208156 tccacaatggtgtgtgcttcacctatttaacaccgtattaaataggcacccttattgtggagaataatatatgggtggctatggagaagagtggctatgg 21208255  T
Q  182 aaacaccctcttattcttcagttttcatgg 211  Q
    || ||||||||  ||||||| |||||||||    
T  21208256 aagcaccctctctttcttcatttttcatgg 21208285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 15135139 - 15135023
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccc--cattgtgg-gaataatatatgggtggctacggagaagagtgg 175  Q
    ||||||| | ||||| |||| ||||| ||| ||||||||||||||||||| |||||  |||||||| | |||||| ||||||||||| ||||||| ||||    
T  15135139 gaccatcaacaatggagggtacttcacctatttagcaccacattaaataggcaccctccattgtggagtataatacatgggtggctatggagaagggtgg 15135040  T
Q  176 ctatgaaaacaccctct 192  Q
    ||||| || ||||||||    
T  15135039 ctatggaagcaccctct 15135023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 20969862 - 20969721
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtg-ggaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||||||||| ||||| ||| ||||||||||||||| ||| || ||||||||||  | |||| |||||||||  || |||| || |||||    
T  20969862 gaccatccacaatggtgggtacttcacctatttagcaccacattaagtaggcacccccattgtgaagtataacatatgggtgtttatggaggagggtggc 20969763  T
Q  177 tatgaaaacaccctcttattcttcagttttcatggatcccat 218  Q
    |||||||||| | |||   |||| | ||||||||||||||||    
T  20969762 tatgaaaacatcatctctctctttaattttcatggatcccat 20969721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 15489397 - 15489490
Alignment:
Q  101 ttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggctatgaaaacaccctct 192  Q
    |||| ||| ||||||||||||||||||| || ||||||||||| | ||||||| |||||| ||| |||||| |||||||||| || ||||||||    
T  15489397 ttcacctatttagcaccacattaaataggcacccccattgtggagtataatatttgggtgtctatggagaaaagtggctatggaagcaccctct 15489490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 22746975 - 22747056
Alignment:
Q  82 catccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtggcta 162  Q
    |||| |||||||||||||||||||||| ||||||| | ||||||||| ||| |  |||||| | ||||||||| ||||||||    
T  22746975 catctataatggtgggtgcttcatctatttagcactatattaaataggcactctgttgtggagtataatatatcggtggcta 22747056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 1910964 - 1911078
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtg-ggaataatatatgggtggctacggagaagagtggct 177  Q
    |||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||| ||||||  | |||||| |||||||||||||||||| |||||||    
T  1910964 gaccatccataatggtgggtgcttcacctatttagcactatattaaatagacaccctattgtgaagtataatacatgggtggctacggagaatagtggct 1911063  T
Q  178 atgaaaacaccctct 192  Q
    ||  || ||||||||    
T  1911064 atagaatcaccctct 1911078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 16706763 - 16706687
Alignment:
Q  83 atccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtg 158  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| | |||| |||||||||    
T  16706763 atccacaatggtgggtgcttcacctatttagcaccacattaaataggcaccccattgtggagtataacatatgggtg 16706687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 17680999 - 17680923
Alignment:
Q  83 atccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtg 158  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| | |||| |||||||||    
T  17680999 atccacaatggtgggtgcttcacctatttagcaccacattaaataggcaccccattgtggagtataacatatgggtg 17680923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 35015985 - 35015874
Alignment:
Q  83 atccataatggtgggtgcttcatctacttagcaccacattaaatagacaccc-cattgtgg-gaataatatatgggtggctacggagaagagtggctatg 180  Q
    ||||| ||||||||||| |||||||| ||||||||| ||||||||| ||||| |||||||| | ||||||||||| ||||||  |||||  |||||||||    
T  35015985 atccacaatggtgggtgtttcatctatttagcaccatattaaataggcaccctcattgtggagtataatatatggatggctatagagaatggtggctatg 35015886  T
Q  181 aaaacaccctct 192  Q
     || ||||||||    
T  35015885 gaagcaccctct 35015874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 1706650 - 1706545
Alignment:
Q  89 aatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggctatgaaaaca 186  Q
    |||||||||||||||||||| |  |||||||||||||||| || ||||||| ||| | |||||| ||||||||||||||||||  |||| |||| || ||    
T  1706650 aatggtgggtgcttcatctattcggcaccacattaaataggcacccccattatggagtataatacatgggtggctacggagaatggtggttatggaagca 1706551  T
Q  187 ccctct 192  Q
    ||||||    
T  1706550 ccctct 1706545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 25026708 - 25026772
Alignment:
Q  78 tgaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacc-ccattgtg 141  Q
    ||||||| | |||||||||||||||||| || ||||||||| |||||||||||||| ||||||||    
T  25026708 tgaccattcgtaatggtgggtgcttcatttatttagcaccatattaaatagacacctccattgtg 25026772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 35016143 - 35016083
Alignment:
Q  83 atccataatggtgggtgcttcatctacttagcaccacattaaatagacaccc-cattgtgg 142  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||||    
T  35016143 atccacaatggtgggtgcttcatctatttagcaccatattaaataggcaccctcattgtgg 35016083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 12287079 - 12287214
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacc-ccattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||  |||||||||||||| | ||| ||| ||||||||||||||| |||| ||||||||| | |||| | ||| ||| |||   ||||| |||||    
T  12287079 gaccatcctcaatggtgggtgctttacctatttaacaccacattaaataggcacctccattgtggagtataagacatgagtgtctatcaagaagggtggc 12287178  T
Q  177 tatgaaaacaccctcttattcttcagttttcatggatc 214  Q
    ||||||| ||||||||   |||||| ||||||||||||    
T  12287179 tatgaaagcaccctct--ctcttcatttttcatggatc 12287214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 41853416 - 41853369
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaat 126  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||    
T  41853416 gaccatccacaatgatggatgcttcatctatttagcaccacattaaat 41853369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 965262 - 965343
Alignment:
Q  110 ttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggctatgaaaacaccc 189  Q
    ||||||||||||||||||| || ||||||||||| | | |||||||||||| ||| |||||| |||| ||||| || |||||    
T  965262 ttagcaccacattaaataggcacccccattgtggagtaaaatatatgggtgtctatggagaatagtgactatggaagcaccc 965343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 2485473 - 2485432
Alignment:
Q  86 cataatggtgggtgcttcatctacttagcaccacattaaata 127  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||    
T  2485473 cataatggtgggtccttcatctatttagcaccatattaaata 2485432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 27743810 - 27743858
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaata 127  Q
    ||||||||| ||||||||||| ||||| || ||||||| ||||||||||    
T  27743810 gaccatccacaatggtgggtgtttcatgtatttagcactacattaaata 27743858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 548 - 663
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacccc-attgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||||||  ||||||| ||| ||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||||||| |||||    
T  548 gaccatccacaatggtgaatgcttcacctatttaacaccacattaaataggcacccccattgtggagaataatatatgggtggctatggagaagggtggc 647  T
Q  177 tatgaaaacaccctct 192  Q
    |||| || ||||||||    
T  648 tatggaagcaccctct 663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 8259568 - 8259434
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgt-gggaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||| | |||||||||||||||||||| |||||| || ||||||||| || ||||||||| ||| |||||||||||||||||| ||||||| ||||     
T  8259568 gaccatctacaatggtgggtgcttcatctatttagcatcatattaaataggcacccccattgtggggtataatatatgggtggctatggagaagggtggt 8259469  T
Q  177 tatgaaaacaccctcttattcttcagttttcatgg 211  Q
    |||| || ||||||||   |||||| |||||||||    
T  8259468 tatggaagcaccctctccctcttcatttttcatgg 8259434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 48379474 - 48379557
Alignment:
Q  80 accatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgt-gggaataatatatgggtggcta 162  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||| | | |||||| |||||||||||    
T  48379474 accatccacaatggtgggtgcttcacctatttagcaccacattaaataggcaccccattgtagagtataatacatgggtggcta 48379557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 15342946 - 15342872
Alignment:
Q  89 aatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtggcta 162  Q
    |||||||||||||||| ||| ||||||||||||||||||  ||||||||||||| | |||||| |||||||||||    
T  15342946 aatggtgggtgcttcacctatttagcaccacattaaataagcaccccattgtggagtataatacatgggtggcta 15342872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 14624968 - 14625053
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacac-cccattgtgg-gaataatatatgggtggcta 162  Q
    ||||||| | |||||||||||||||| ||| |||||||||||||||| || ||| || ||||||| ||||||||||||||||||||    
T  14624968 gaccatctacaatggtgggtgcttcacctatttagcaccacattaaagaggcactcctattgtggagaataatatatgggtggcta 14625053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 208
Target Start/End: Complemental strand, 16255560 - 16255433
Alignment:
Q  82 catccataatggtgggtgcttcatctacttagcaccacattaaatagacaccc-cattgtgg-gaataatatatgggtggctacggagaagagtggctat 179  Q
    |||||||||  ||||||| |||| ||| |||||||||||||||||| |||||| |||| ||  | |||||||||||||| ||| | ||||||||||||||    
T  16255560 catccataaaagtgggtgtttcacctatttagcaccacattaaata-acaccctcattatgaagtataatatatgggtgcctatgtagaagagtggctat 16255462  T
Q  180 gaaaacaccctcttattcttcagttttca 208  Q
    | || |||||||||  |||||| ||||||    
T  16255461 ggaagcaccctctttctcttcaattttca 16255433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 33737371 - 33737260
Alignment:
Q  101 ttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtggctacggagaagagtggctatgaaaacaccctcttattctt 199  Q
    |||||||| |||||||||||||| |||| ||| ||||||||| | |||||| ||| ||||||||||||||   || |||||||| ||||||||   ||||    
T  33737371 ttcatctatttagcaccacattagataggcactccattgtggagtataatacatgagtggctacggagaaagatgactatgaaagcaccctctctctctt 33737272  T
Q  200 cagttttcatgg 211  Q
    || |||||||||    
T  33737271 catttttcatgg 33737260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 48941642 - 48941592
Alignment:
Q  82 catccataatggtgggtgcttcatctacttagcaccacattaaatagacac 132  Q
    |||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  48941642 catccataatggtgggtgtttcatctatttagcaccatattaaatagacac 48941592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 51776544 - 51776593
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatag 128  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  51776544 gaccatccataatggtgggtgtttcacctatttagcaccacattaaatag 51776593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 9694171 - 9694111
Alignment:
Q  82 catccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg 142  Q
    |||||| |||||||||||||||| ||| ||||||||| | ||||||| |||||||||||||    
T  9694171 catccaaaatggtgggtgcttcacctatttagcaccatactaaataggcaccccattgtgg 9694111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 29700951 - 29701066
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||||||||||||| | ||| ||||||| | ||||||||| || ||||| ||||| | | ||||||||||||  || ||||||| |||||    
T  29700951 gaccatccagaatggtgggtgcttaacctatttagcacaatattaaataggcacccccactgtggagcaaaatatatgggtgtatatggagaagggtggc 29701050  T
Q  177 tatgaaaacaccctct 192  Q
    |||||||  |||||||    
T  29701051 tatgaaagtaccctct 29701066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 43728705 - 43728651
Alignment:
Q  89 aatggtgggtgcttcatctacttagcaccacattaaatagacacc-ccattgtgg 142  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||    
T  43728705 aatggtggatgcttcatctatttagcaccacattaaataggcacctccattgtgg 43728651  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 25389802 - 25389757
Alignment:
Q  89 aatggtgggtgcttcatctacttagcaccacattaaatagacaccc 134  Q
    |||||||||||||| | ||| |||||||||||||||||||||||||    
T  25389802 aatggtgggtgcttaacctatttagcaccacattaaatagacaccc 25389757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 24120426 - 24120317
Alignment:
Q  110 ttagcaccacattaaatagacacccc-attgtgg-gaataatatatgggtggctacggagaagagtggctatgaaaacaccctcttattcttcagttttc 207  Q
    |||||||||||||||||||  ||||| ||||||| ||||||| |||||| ||||| ||||||   ||||||||||| |||| |||   |||||| |||||    
T  24120426 ttagcaccacattaaataggaacccccattgtggagaataatgtatgggcggctatggagaaagatggctatgaaagcaccatctctctcttcatttttc 24120327  T
Q  208 atggatccca 217  Q
     ||| |||||    
T  24120326 ttgggtccca 24120317  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 7186185 - 7186326
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccc-cattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    |||||| || ||||||||||||||||  || ||||||||  ||||||||| ||| | |||||||| |||||||||||||||||||| ||||||| |||||    
T  7186185 gaccatacacaatggtgggtgcttcacatatttagcaccgtattaaataggcactctcattgtggagaataatatatgggtggctatggagaagggtggc 7186284  T
Q  177 tatgaaaacaccctcttattcttcagttttcatggatcccat 218  Q
    |||| || ||||||||   |||||| ||||||||| ||||||    
T  7186285 tatggaagcaccctctctatcttcatttttcatgggtcccat 7186326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 8845551 - 8845671
Alignment:
Q  74 tctttgaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacac-cccattgtgg-gaataatatatgggtggctacggagaaga 171  Q
    |||| ||||||||| |||||||||||||| | ||| ||||||||||||||||||| |||  ||||||||| | |||| |||||||||  || |||| ||     
T  8845551 tcttagaccatccacaatggtgggtgctttacctatttagcaccacattaaataggcacttccattgtggagtataacatatgggtgcttatggaggagg 8845650  T
Q  172 gtggctatgaaaacaccctct 192  Q
    ||||||||| || ||||||||    
T  8845651 gtggctatggaagcaccctct 8845671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 37127751 - 37127627
Alignment:
Q  89 aatggtgggtgcttcatctacttagcaccacattaaatagacaccc-cattgtgg-gaataatatatgggtggctacggagaagagtggctatgaaaaca 186  Q
    |||||||||||||| | ||| ||| ||||||||||||||| || || || ||||| | |||||| || |||||||| ||||||||||||||||| || ||    
T  37127751 aatggtgggtgctttacctatttatcaccacattaaataggcatcctcactgtggagtataataaataggtggctatggagaagagtggctatggaagca 37127652  T
Q  187 ccctcttattcttcagttttcatgg 211  Q
     ||||||  |||||| |||||||||    
T  37127651 acctctttctcttcatttttcatgg 37127627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 41407196 - 41407310
Alignment:
Q  80 accatccataatggtgggtgcttcatctacttagcaccacattaaatagacacc-ccattgtgg-gaataatatatgggtggctacggagaagagtggct 177  Q
    |||||||| |||| ||||||||||||||| ||| ||||| ||||||||| ||||  |||||||| | | ||||||||||||||||  |||||  ||||||    
T  41407196 accatccacaatgatgggtgcttcatctatttaacaccatattaaataggcaccatcattgtggagtaaaatatatgggtggctatagagaatggtggct 41407295  T
Q  178 atgaaaacaccctct 192  Q
    ||| || ||||||||    
T  41407296 atggaagcaccctct 41407310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 40216364 - 40216486
Alignment:
Q  90 atggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtggctacggagaagagtggctatgaaaacacc 188  Q
    ||||||| ||||||| ||| ||||||||||||||||||  ||  ||||||||| | ||||||||  ||||| || ||||||| |||| |||| || ||||    
T  40216364 atggtggatgcttcacctatttagcaccacattaaatacccattccattgtggagtataatataatggtggttatggagaagggtggttatggaagcacc 40216463  T
Q  189 ctcttattcttcagttttcatgg 211  Q
    ||||   |||||| |||||||||    
T  40216464 ctctatctcttcatttttcatgg 40216486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 34474509 - 34474412
Alignment:
Q  92 ggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtggctacggagaagagtggctatgaaaacacc 188  Q
    |||||||| |||| ||| ||| |||||| |||||||  || |||||||||| | ||||||||||| || ||| | ||||| |||||||||||||||||    
T  34474509 ggtgggtgtttcacctatttaacaccacgttaaatatgcatcccattgtggagtataatatatggatgtctatgaagaagtgtggctatgaaaacacc 34474412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 19279428 - 19279565
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacac-cccattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||||||||||||||| ||| |||||| |||||||||||||||| ||| || ||| | |||||| ||||||||||| |||||||  ||||    
T  19279428 gaccatccacaatggtgggtgcttcacctatttagcatcacattaaatagacacaccctttatggagtataatacatgggtggctatggagaaggatggc 19279527  T
Q  177 tatgaaaacaccctcttattcttcagttttcatggatc 214  Q
    |||| || ||||||||   |||||  ||||||||||||    
T  19279528 tatggaagcaccctctctctcttcctttttcatggatc 19279565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 23418860 - 23418975
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||| ||||||||||||||| ||| ||||  ||||||||| || ||||||||||| | |||||||||||||||||| ||||||  |||||    
T  23418860 gaccatccacaatgatgggtgcttcatctatttaacaccgtattaaataggcacccccattgtggagtataatatatgggtggctatggagaatggtggc 23418959  T
Q  177 tatgaaaacaccctct 192  Q
    |||| || ||||||||    
T  23418960 tatggaagcaccctct 23418975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 9622476 - 9622420
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacccc 135  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  9622476 gaccatccacaatggtgggtgcttcacctatttagcaccacattaaatagacacccc 9622420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 27903561 - 27903630
Alignment:
Q  90 atggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtg 158  Q
    |||||||||| |||| ||| ||||||| ||||||||||| ||||||||||||| | |||||| |||||||    
T  27903561 atggtgggtgtttcacctatttagcactacattaaataggcaccccattgtggagtataatacatgggtg 27903630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 43101039 - 43100926
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccc-cattgtgg-gaataatatatgggtggctacggagaagagtggc 176  Q
    ||||||||| |||||||||||||| | ||| ||||||||||||||||||  ||||| |||||||| | |||| |||||||||  || |||| ||  ||||    
T  43101039 gaccatcca-aatggtgggtgcttaacctatttagcaccacattaaataagcaccctcattgtggagtataacatatgggtgcttatggagtaggttggc 43100941  T
Q  177 tatgaaaacaccctc 191  Q
    |||| || |||||||    
T  43100940 tatggaagcaccctc 43100926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 26952634 - 26952523
Alignment:
Q  83 atccataatggtgggtgcttcatctacttagcaccacattaaatagacacc-ccattgtgg-gaataatatatgggtggctacggagaagagtggctatg 180  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||| | ||||||| |||||| ||| ||| ||||||| |||||    
T  26952634 atccacaatggtgggtgcttcacctatttagcaccatattaaatagacacctccattgtggagtataatatttgggtgcctatggacaagagtgactatg 26952535  T
Q  181 aaaacaccctct 192  Q
     || ||||||||    
T  26952534 gaagcaccctct 26952523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 37333177 - 37333288
Alignment:
Q  83 atccataatggtgggtgcttcatctacttagcaccacattaaatagaca-ccccattgtgg-gaataatatatgggtggctacggagaagagtggctatg 180  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||||| || |||||||| | |||| |||| ||||  |||||||||| |||||||||    
T  37333177 atccacaatggtgggtgcttcacctatttagcaccacattaaatagacatcctcattgtggagtataacatatcggtgcttacggagaagggtggctatg 37333276  T
Q  181 aaaacaccctct 192  Q
     || ||||||||    
T  37333277 gaagcaccctct 37333288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 18090363 - 18090417
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacacc 133  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||    
T  18090363 gaccatccacaatggtggatgcttcatctatttagcaccacattaaataggcacc 18090417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 29079004 - 29078890
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgggaataatat--atgggtggctacggagaagagtggc 176  Q
    ||||||||| |||| || |||||| | ||| ||| |||||||||||||||  |||||||||| ||| ||||||  ||||||| ||| ||||||| |||||    
T  29079004 gaccatccacaatgatgagtgcttaacctatttaacaccacattaaataggtaccccattgt-ggagtaatatacatgggtgtctatggagaagggtggc 29078906  T
Q  177 tatgaaaacaccctct 192  Q
    |||| || ||||||||    
T  29078905 tatggaagcaccctct 29078890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 1102787 - 1102840
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacac 132  Q
    ||||||||| ||||||  |||||||| |||  ||||||||||||||||||||||    
T  1102787 gaccatccacaatggtacgtgcttcacctatgtagcaccacattaaatagacac 1102840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 20936254 - 20936141
Alignment:
Q  80 accatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg-gaataatatatgggtggctacggagaagagtggcta 178  Q
    |||||||| |||| ||| ||||| ||||| |||  ||||| ||||||||  |||||||||||| | |  |||||| |||| ||| ||||||| |||||||    
T  20936254 accatccacaatgatggatgcttaatctatttaataccactttaaataggtaccccattgtggagtaatatatataggtgcctatggagaagggtggcta 20936155  T
Q  179 tgaaaacaccctct 192  Q
    || || ||||||||    
T  20936154 tggaagcaccctct 20936141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 22335 - 22272
Alignment:
Q  79 gaccatccataatggtgggtgcttcatctacttagcaccacattaaatagacaccccattgtgg 142  Q
    ||||||||| |||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||    
T  22335 gaccatccacaatggtggatgcttcacctatttaacaccacattaaatagacaccccattgtgg 22272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 101677 - 101630
Alignment:
Q  145 ataatatatgggtggctacggagaagagtggctatgaaaacaccctct 192  Q
    |||||||||||||||||| ||||||| ||||||||| || ||||||||    
T  101677 ataatatatgggtggctatggagaagggtggctatggaagcaccctct 101630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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