View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18843_low_1 (Length: 700)
Name: NF18843_low_1
Description: NF18843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18843_low_1 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
|
| [»] scaffold0734 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 17 - 550
Target Start/End: Original strand, 11170707 - 11171240
Alignment:
| Q |
17 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170707 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
11170806 |
T |
|
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170807 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtg |
11170906 |
T |
|
| Q |
217 |
agtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | | ||| ||||||||| |||||| |||||||||| ||||| |
|
|
| T |
11170907 |
agtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaaggaaggtttctgctatctcgcgcattttcaccaataccatggatga |
11171006 |
T |
|
| Q |
317 |
tatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaatggccacaacttc |
416 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
11171007 |
gatttcttcagcagcaaaatgtttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttc |
11171106 |
T |
|
| Q |
417 |
acatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgnnnnnnnnttgga |
516 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11171107 |
acatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaacaattgga |
11171206 |
T |
|
| Q |
517 |
tcgctttatgaattaatcattctatgtggatttg |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11171207 |
tcgctttatgaattaatcattctatgtggatttg |
11171240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 11209529 - 11210012
Alignment:
| Q |
17 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
11209529 |
gatatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatg |
11209628 |
T |
|
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtg |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11209629 |
ccaaagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtg |
11209728 |
T |
|
| Q |
217 |
agtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||| ||| |||| |||||| ||||||||||| ||||| |
|
|
| T |
11209729 |
agtcattaaagtatgcaggcacagttataacaacatcatccactgttgatccaaggaaggcttctgctgtctctcgcattttcgccaataccatggatga |
11209828 |
T |
|
| Q |
317 |
tatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaatggccacaacttc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11209829 |
gatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcatttaggtcgccaattactttgaatggccacaacttc |
11209928 |
T |
|
| Q |
417 |
acatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact |
500 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11209929 |
acatcactttctactatggggtcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact |
11210012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 488
Target Start/End: Original strand, 11276091 - 11276562
Alignment:
| Q |
17 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11276091 |
gatatcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtg |
11276190 |
T |
|
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtg |
216 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11276191 |
ttaaagccatatgcaattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtg |
11276290 |
T |
|
| Q |
217 |
agtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | ||||| ||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
11276291 |
agtcattaaagtatgcaggcacagttataacaacatcctccactgttaatccaaggaaggcttctgctatctcgcgcattttcgccaataccatggatga |
11276390 |
T |
|
| Q |
317 |
tatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaatggccacaacttc |
416 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
11276391 |
gatttcttcagcagtaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttc |
11276490 |
T |
|
| Q |
417 |
acatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagaga |
488 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11276491 |
acatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagaga |
11276562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Original strand, 11196860 - 11197326
Alignment:
| Q |
17 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
116 |
Q |
| |
|
|||| |||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| | |
|
|
| T |
11196860 |
gatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatg |
11196959 |
T |
|
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtg |
216 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
11196960 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtg |
11197059 |
T |
|
| Q |
217 |
agtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatga |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197060 |
agtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatga |
11197159 |
T |
|
| Q |
317 |
tatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaatggccacaacttc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
11197160 |
gatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttc |
11197259 |
T |
|
| Q |
417 |
acatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaa |
483 |
Q |
| |
|
| |||||||||||| || | |||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11197260 |
atatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaa |
11197326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Original strand, 11156407 - 11156895
Alignment:
| Q |
17 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
116 |
Q |
| |
|
|||| |||| |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||| ||||||| | |
|
|
| T |
11156407 |
gatagcacctttctcaaatgtgagaatggacacgtccaaagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatg |
11156506 |
T |
|
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtg |
216 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||| |
|
|
| T |
11156507 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtg |
11156606 |
T |
|
| Q |
217 |
agtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatga |
316 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156607 |
agtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcggccatttttgccaataccatcgatga |
11156706 |
T |
|
| Q |
317 |
tatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaatggccacaacttc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
11156707 |
gatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcattgaggttgccaattactttgaagggccacgacttc |
11156806 |
T |
|
| Q |
417 |
acatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaa--aagagagttgtgtacactatg |
503 |
Q |
| |
|
| |||||||||||| || | |||||||| |||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
11156807 |
atatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaacaaaagagttgagtacactatg |
11156895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 11241477 - 11241005
Alignment:
| Q |
17 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
116 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||| | ||||| ||||||||||||||||| | ||||| | |
|
|
| T |
11241477 |
gatagcaccattctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaagagttttcatg |
11241378 |
T |
|
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtg |
216 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||| ||| ||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11241377 |
ttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaatagactggcgttgtg |
11241278 |
T |
|
| Q |
217 |
agtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatga |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11241277 |
agtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatcttggccatttttgccaataccatcgatga |
11241178 |
T |
|
| Q |
317 |
tatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaatggccacaacttc |
416 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
11241177 |
gatttcttcagcagcgaaatgcttttcctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtcgccaattactttgaagggccacaacttc |
11241078 |
T |
|
| Q |
417 |
acatcactttgtactatgggatcgca------aaatttccgaccaattagcctctttgcatctacaaaacaaa |
483 |
Q |
| |
|
| ||||||||||| ||||| || || ||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11241077 |
atatcactttgtatgatggggtcacaaaacttaaacttcctaccaattagcctctttgcatctacaaaacaaa |
11241005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 11200025 - 11200397
Alignment:
| Q |
17 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
116 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
11200025 |
gatagcaccattctcaaatgtgagaatggacacatccagagtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatg |
11200124 |
T |
|
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactgg----cgt |
212 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
11200125 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtacgt |
11200224 |
T |
|
| Q |
213 |
tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcg |
312 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| | |
|
|
| T |
11200225 |
tgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatgg |
11200324 |
T |
|
| Q |
313 |
atgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgag |
385 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11200325 |
atgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgag |
11200397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 11161274 - 11161654
Alignment:
| Q |
17 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
116 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||| ||||||| | |
|
|
| T |
11161274 |
gatagcaccaatctcaaatgtgagaatagacacgtccaaagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatg |
11161373 |
T |
|
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggct--------cattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactg |
208 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| |||||| || |||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
11161374 |
tcaagaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcgcataacattaaggccaacaatagcacccgcatctcgagtagactg |
11161473 |
T |
|
| Q |
209 |
gcgt----tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaa |
304 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |
|
|
| T |
11161474 |
gcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaa |
11161573 |
T |
|
| Q |
305 |
taccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgag |
385 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161574 |
taccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgag |
11161654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 33 - 479
Target Start/End: Original strand, 11133147 - 11133593
Alignment:
| Q |
33 |
aatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaa |
132 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||| ||||| ||||||| ||||||| | || |||||||||| |||||| |||||| |||||||||| |
|
|
| T |
11133147 |
aatgtgagaatagacacatccaatgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaa |
11133246 |
T |
|
| Q |
133 |
ttgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgc |
232 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||| ||||| || |||||| |||| ||||||| ||||| |||||||| |||||||||||||| || |
|
|
| T |
11133247 |
ttgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagc |
11133346 |
T |
|
| Q |
233 |
aggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagca |
332 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||| |||| || ||||| ||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
11133347 |
aggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatttttgtcaataccattgatgatatttcctcagcagca |
11133446 |
T |
|
| Q |
333 |
aaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaatggccacaacttcacatcactttgtacta |
432 |
Q |
| |
|
||||| |||||||| |||| || || |||||||| ||||||||||||| | | | ||||||||||| ||||||||||| |||| |||||| || |||| |
|
|
| T |
11133447 |
aaatgtttttcctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaattactttaaatggccacaatttcatatcactctgaacta |
11133546 |
T |
|
| Q |
433 |
tgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaa |
479 |
Q |
| |
|
| || || | ||||| | |||||| |||||||| |||||||||||| |
|
|
| T |
11133547 |
tagggtcactaaattctctaccaatgagcctcttcgcatctacaaaa |
11133593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 620 - 690
Target Start/End: Original strand, 11171312 - 11171382
Alignment:
| Q |
620 |
ttaaccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagctcctatg |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11171312 |
ttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaatcagctcctatg |
11171382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 11314759 - 11314688
Alignment:
| Q |
22 |
caccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctac |
93 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||||||| ||||| || || || |||||||||||||||| |
|
|
| T |
11314759 |
caccattctcaagtgtgagaatagacacatccaaagtaccgccacccaaatcgaagatgaaaacatttctac |
11314688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 637 - 682
Target Start/End: Original strand, 8382104 - 8382149
Alignment:
| Q |
637 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatcag |
682 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
8382104 |
acaatcttgcaattttgatcccttataaaaaacaataacaaatcag |
8382149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 307; Significance: 1e-172; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 17 - 549
Target Start/End: Original strand, 1025 - 1538
Alignment:
| Q |
17 |
gatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaag |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |
|
|
| T |
1025 |
gatatcaccattctcaaatttgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctatgtccatgtg---atggttttgtg |
1121 |
T |
|
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtg |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
1122 |
tcaaagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgtg |
1221 |
T |
|
| Q |
217 |
agtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||| ||||| |||||| ||||||||||| ||||| |
|
|
| T |
1222 |
agtcattaaagtatgcaggcacagttataacaacatcctccactgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatga |
1321 |
T |
|
| Q |
317 |
tatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaatggccacaacttc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
1322 |
gatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttat------------------gtatgaatggccacaacttc |
1403 |
T |
|
| Q |
417 |
acatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg--nnnnnnnnttg |
514 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1404 |
acatcactttctactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaaaacaattg |
1503 |
T |
|
| Q |
515 |
gatcgctttatgaattaatcattctatgtggattt |
549 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |
|
|
| T |
1504 |
tatcgctttatgtattaatcattttatgtggattt |
1538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 20)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 8382805 - 8382727
Alignment:
| Q |
119 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
8382805 |
aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct |
8382727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 8602213 - 8602291
Alignment:
| Q |
119 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||| |||||||| |||||||| ||||| |||||| |
|
|
| T |
8602213 |
aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct |
8602291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 13333388 - 13333307
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| |||||| || | ||| ||||||||||||||||| |||||| |
|
|
| T |
13333388 |
gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct |
13333307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 10494306 - 10494226
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
196 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||||||| ||||| |
|
|
| T |
10494306 |
gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc |
10494226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 8585638 - 8585558
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
196 |
Q |
| |
|
|||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
8585638 |
gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc |
8585558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 624 - 683
Target Start/End: Original strand, 2407345 - 2407404
Alignment:
| Q |
624 |
ccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
683 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
2407345 |
ccccctaagtatcacaatcttgcgattttggtcccctataaaaaacaataacaaatcagc |
2407404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 8628768 - 8628847
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat |
195 |
Q |
| |
|
|||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| |||| |
|
|
| T |
8628768 |
gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat |
8628847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 637 - 683
Target Start/End: Original strand, 7875716 - 7875762
Alignment:
| Q |
637 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
683 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7875716 |
acaatcttgcgattttggtcccctataaaaaacaataacaaatcagc |
7875762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc |
190 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| | | ||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
27830807 |
gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc |
27830733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
| Q |
123 |
ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaata |
185 |
Q |
| |
|
|||||||||| |||||| ||||| || ||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
29577594 |
ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata |
29577532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 8654686 - 8654767
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||||||| || || || || || |||||||| ||||| |||||| |
|
|
| T |
8654686 |
gtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct |
8654767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 8667655 - 8667736
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||| |
|
|
| T |
8667655 |
gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct |
8667736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 6789749 - 6789829
Alignment:
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
|||||||||||||||| ||||| || || || ||||||| |||||| |||||||| || |||||||| ||||| |||||| |
|
|
| T |
6789749 |
tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct |
6789829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 8671562 - 8671482
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
196 |
Q |
| |
|
|||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||| |
|
|
| T |
8671562 |
gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc |
8671482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 683
Target Start/End: Original strand, 40352657 - 40352717
Alignment:
| Q |
623 |
accccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
683 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||| | | |||||||||||||||||||||| |
|
|
| T |
40352657 |
accccctaagtatcacaatcttgcgattttggtcgcctataaaaaacaataacaaatcagc |
40352717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
| Q |
123 |
ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
||||| ||||| || || |||||||| ||||||| ||| ||||||| ||| |||||||||||| |||| |||||| |
|
|
| T |
3147515 |
ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct |
3147589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 7877662 - 7877584
Alignment:
| Q |
119 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||||| | ||| ||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
7877662 |
aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatct |
7877584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 8538275 - 8538353
Alignment:
| Q |
119 |
aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
|||||| ||||||| ||||| || ||||| ||||||| ||| ||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
8538275 |
aaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct |
8538353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 679
Target Start/End: Original strand, 41415672 - 41415714
Alignment:
| Q |
637 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaat |
679 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
41415672 |
acaatcttgcgattttggccccttataaaaaacaataacaaat |
41415714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 474
Target Start/End: Original strand, 3147757 - 3147866
Alignment:
| Q |
365 |
aatcatgggtttgtcattgaggtcgccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctc |
464 |
Q |
| |
|
|||||||||||||||||| | ||| ||| || ||||||||||||||| ||| |||| |||| || | | ||| | ||| |||| |||||||| |||| |
|
|
| T |
3147757 |
aatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctc |
3147856 |
T |
|
| Q |
465 |
tttgcatcta |
474 |
Q |
| |
|
|||||||||| |
|
|
| T |
3147857 |
tttgcatcta |
3147866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 1908 - 1962
Alignment:
| Q |
629 |
taagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
683 |
Q |
| |
|
||||||| ||||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
1908 |
taagtaacacaatcttgagattttggtcccctataaaaaacaataacaaatcagc |
1962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 500
Target Start/End: Original strand, 6714 - 6770
Alignment:
| Q |
446 |
tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact |
500 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
6714 |
tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact |
6770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 9335822 - 9335742
Alignment:
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||| ||| |||||| |
|
|
| T |
9335822 |
tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct |
9335742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 30775489 - 30775568
Alignment:
| Q |
117 |
tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
196 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||||||| | ||||| ||||||||| || |||||||| ||||| ||||| |
|
|
| T |
30775489 |
tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc |
30775568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 35132684 - 35132765
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||| | || || |||||||||| | |||||||||||||| |||||| |
|
|
| T |
35132684 |
gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct |
35132765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 7542462 - 7542543
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||| | | | ||||||||||||||||||||| |||||||||||| |
|
|
| T |
7542462 |
gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatct |
7542543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 16661924 - 16661844
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
196 |
Q |
| |
|
|||||||||||||||||| || |||||||| || ||||||| ||| | || ||| || ||||||||||| ||||| ||||| |
|
|
| T |
16661924 |
gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatc |
16661844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 16657449 - 16657368
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct |
197 |
Q |
| |
|
|||||| ||||||||||| || || |||||||| ||||||| ||||| || ||||| |||||||| || ||||| |||||| |
|
|
| T |
16657449 |
gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatct |
16657368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 14703644 - 14703724
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
196 |
Q |
| |
|
|||||||||||||||||| || || || ||||| ||||| | || | ||||||||||||||| |||||| |||| ||||| |
|
|
| T |
14703644 |
gtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc |
14703724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 637 - 681
Target Start/End: Original strand, 5003527 - 5003571
Alignment:
| Q |
637 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatca |
681 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
5003527 |
acaatcttgcgattttgatcccttataaaaaacaataacaaatca |
5003571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 34466725 - 34466645
Alignment:
| Q |
116 |
gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc |
196 |
Q |
| |
|
|||||| ||||||||||| || || ||||| || ||||||| |||| ||| |||||| ||||||||||||| ||| ||||| |
|
|
| T |
34466725 |
gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc |
34466645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 638 - 683
Target Start/End: Original strand, 33096059 - 33096104
Alignment:
| Q |
638 |
caatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
683 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
33096059 |
caatcttgcaattttggtcccttataaaaaataataacaaatcagc |
33096104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 683
Target Start/End: Original strand, 18896459 - 18896505
Alignment:
| Q |
637 |
acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc |
683 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
18896459 |
acaatcttgcgattttggtcccctataaaaaacaataataaatcagc |
18896505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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