View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18843_low_2 (Length: 597)
Name: NF18843_low_2
Description: NF18843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18843_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 38 - 552
Target Start/End: Complemental strand, 12552231 - 12551715
Alignment:
| Q |
38 |
aaaattgacgtct--aacacttagtgatggaattagagacgaaattattttttccgtctgtgaaattccgtcgctatctttagagtgatttcaatatcat |
135 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12552231 |
aaaattgacgtctctaacacttagtgatggaattagagacgaaattattttttccgtctctgaaattccgtcgctatctttagagtgatttcaatatcat |
12552132 |
T |
|
| Q |
136 |
tttctacataagaaaaaacaagttaagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatctgtgaatttccctct |
235 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12552131 |
tttctacataagaaaaaacaagataagaaatatacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatcagtgaatttccctct |
12552032 |
T |
|
| Q |
236 |
cttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgttttgaaagtgttccccaatttccatgg |
335 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12552031 |
cttgatatcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgttttgaaagtgttccccaatttccatgg |
12551932 |
T |
|
| Q |
336 |
ccatgtttgttgatataatcaatcagcttctcatcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggtgacctacccataa |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12551931 |
ccatgtttgttgatataatcaatcagcttctcatcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggtgacctacccataa |
12551832 |
T |
|
| Q |
436 |
taatattgcacaatgaattaatgttccaagacaaaactataggttataggaaacttagcataggttgcatattgtgtgggattttataggtgtagtatgc |
535 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12551831 |
taatattgcacaatgaattaatgttccaagacaaaactataggttataggaaacttagcataggttgcatattatgtgggattttataggtgtagtatgc |
12551732 |
T |
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| Q |
536 |
catcatttttgctatta |
552 |
Q |
| |
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||||||||||||||||| |
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| T |
12551731 |
catcatttttgctatta |
12551715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 168 - 289
Target Start/End: Complemental strand, 1281457 - 1281336
Alignment:
| Q |
168 |
tacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatctgtgaatttccctctcttgatgtcaggcctcaaataatttgtccacc |
267 |
Q |
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||||| ||||||||||||||||| | |||||||| | | ||||||||||| | ||||||||||| || || ||||| || |||||||||||||| | |
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| T |
1281457 |
tacttatttccaagaactgaatgtaaattgatgatgagttcctcttcttcatcagaaaatttccctcttttaatatcaggacttaaataatttgtccatc |
1281358 |
T |
|
| Q |
268 |
ttaacctacaactcttcccaca |
289 |
Q |
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|||||||||||||||| ||||| |
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| T |
1281357 |
ttaacctacaactctttccaca |
1281336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 343
Target Start/End: Original strand, 1319261 - 1319436
Alignment:
| Q |
168 |
tacttgtttccaagaactgaatgaaggttgatgataactctttcttcttcatctgtgaatttccctctcttgatgtcaggcctcaaataatttgtccacc |
267 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||| | ||||||||||||| | |||||| ||||| | || |||||||| | |||||| |||| | |
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| T |
1319261 |
tacttatttccaagaactgaatgtaaattgatgatgagattttcttcttcatcagagaattttcctcttctaatatcaggccttagataattattccatc |
1319360 |
T |
|
| Q |
268 |
ttaacctacaactcttcccacacctattcaaaccagcacgttttgaaagtgttccccaatttccatggccatgttt |
343 |
Q |
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| | ||||||||||| ||||| |||||||| || ||| | |||| ||| | || |||| |||||||||||||||| |
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| T |
1319361 |
taagtctacaactctttccacatctattcaatcctgcaagctttggaagagctctccaacttccatggccatgttt |
1319436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 2590895 - 2590846
Alignment:
| Q |
243 |
tcaggcctcaaataatttgtccaccttaacctacaactcttcccacacct |
292 |
Q |
| |
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|||||||| ||||||||| |||| || |||||||||||||| |||||||| |
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| T |
2590895 |
tcaggccttaaataatttatccatctcaacctacaactcttaccacacct |
2590846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 597
Target Start/End: Original strand, 12551433 - 12551462
Alignment:
| Q |
568 |
aattaactataatgaaattcaaactagtac |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
12551433 |
aattaactataatgaaattcaaactagtac |
12551462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 343
Target Start/End: Complemental strand, 30007328 - 30007195
Alignment:
| Q |
210 |
tcttcttcatctgtgaatttccctctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaaccagcacgtt |
309 |
Q |
| |
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||||||||||||||||||| ||||| ||||| ||||| || ||||| || |||||||||| || ||||| |||||||| || ||||| || || | | |
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| T |
30007328 |
tcttcttcatctgtgaattgtcctcttttgatatcaggtcttaaatagttagtccaccttagtctgcaacttttcccacatctgttcaatcctgctagct |
30007229 |
T |
|
| Q |
310 |
ttgaaagtgttccccaatttccatggccatgttt |
343 |
Q |
| |
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||| ||||| || |||| |||||||||||||||| |
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| T |
30007228 |
ttggaagtgctctccaacttccatggccatgttt |
30007195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 33695415 - 33695345
Alignment:
| Q |
225 |
aatttccctctcttgatgtcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctatt |
295 |
Q |
| |
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||||| |||||||| || |||||||| |||||||| |||||||||| |||||||||||| ||||| ||||| |
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| T |
33695415 |
aattttcctctcttaatatcaggccttaaataattggtccaccttagcctacaactctttccacatctatt |
33695345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 37962917 - 37962859
Alignment:
| Q |
243 |
tcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaacc |
301 |
Q |
| |
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||||||||||| |||||| |||| |||||||| ||||||||||||||||| | |||||| |
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| T |
37962917 |
tcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttgcaaacc |
37962859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 3910341 - 3910285
Alignment:
| Q |
368 |
atcttcttcttgtgtccatggccctttctttacaccaatttcatcacaacatggtga |
424 |
Q |
| |
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|||||||||| | |||||||| |||||||||| ||||| || |||||||||||||| |
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|
| T |
3910341 |
atcttcttctggagtccatggacctttctttaaaccaactttgtcacaacatggtga |
3910285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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