View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18843_low_3 (Length: 450)

Name: NF18843_low_3
Description: NF18843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18843_low_3
NF18843_low_3
[»] chr5 (10 HSPs)
chr5 (46-432)||(12558437-12558824)
chr5 (275-411)||(9291061-9291198)
chr5 (229-430)||(12560736-12560937)
chr5 (75-148)||(9212410-9212483)
chr5 (75-148)||(9365057-9365130)
chr5 (61-148)||(35970332-35970419)
chr5 (75-148)||(9371408-9371481)
chr5 (58-148)||(9290851-9290941)
chr5 (61-145)||(9333136-9333220)
chr5 (77-143)||(9306955-9307021)
[»] chr7 (1 HSPs)
chr7 (61-148)||(6600878-6600965)
[»] chr4 (5 HSPs)
chr4 (61-148)||(38168863-38168950)
chr4 (61-148)||(40765083-40765170)
chr4 (61-148)||(40770948-40771035)
chr4 (62-148)||(40777660-40777746)
chr4 (61-148)||(37088298-37088385)
[»] chr8 (2 HSPs)
chr8 (61-148)||(31857613-31857700)
chr8 (75-148)||(44916590-44916663)
[»] chr6 (1 HSPs)
chr6 (77-148)||(24694523-24694594)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 46 - 432
Target Start/End: Complemental strand, 12558824 - 12558437
Alignment:
Q  46 tgagatggaccca-gtctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagt 144  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  12558824 tgagttggacccaagtctaagaggggatcaggaaatagttttcaaccagcaatagacacgcctcggttagaacctcactagatgcgtcattgccccaagt 12558725  T
Q  145 gcaatccaaagatggtttttcctattgcttaacctgnnnnnnnatataaccttacactcgtctcatttctcttattagcaatgcaagactaggaaaattt 244  Q
    ||||| |||||||||||||   ||||| ||||||||       ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  12558724 gcaatgcaaagatggttttaaatattggttaacctgtttttttatataaccttaaactcgtctaatttctcttattagcaatgcaagactaggaaaattt 12558625  T
Q  245 gcttatagttcaccactcgtaactcttttccttaaactttaatcttagaatcggtagcatttgagttaatagggttaagactttgtttatcatatcttta 344  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12558624 gctgatagttcaccactcgtaactcttttccttaaactttaatcttagaatcggtagcatttgagttaatagggttaagactttgtttatcatatcttga 12558525  T
Q  345 acaactttaagtgaaaacttcaaaggtggaatgcattggatctttgatcttctgcagtagacatcaacatctgcatacatacaacatt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12558524 acaactttaagtgaaaacttcaaaggtggaatgcattggatctttgatcttctgcagtagacatcaacatctgcatacatacaacatt 12558437  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 275 - 411
Target Start/End: Original strand, 9291061 - 9291198
Alignment:
Q  275 cttaaactttaatcttagaatcggtagcatttgagttaatagggttaagactttgtttatcatatcttt-aacaactttaagtgaaaacttcaaaggtgg 373  Q
    |||||| ||| | |||||||| |||||||| |||||| | |||||| |||||||||||||||||||||| |||||   ||||||||||||||||||||||    
T  9291061 cttaaattttgaacttagaattggtagcatctgagttgacagggttcagactttgtttatcatatctttgaacaagcctaagtgaaaacttcaaaggtgg 9291160  T
Q  374 aatgcattggatctttgatcttctgcagtagacatcaa 411  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9291161 aatgcattggatctttgatcttctgtagtagacatcaa 9291198  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 229 - 430
Target Start/End: Complemental strand, 12560937 - 12560736
Alignment:
Q  229 aagactaggaaaatttgcttatagttcaccactcgtaactcttttccttaaactttaatcttagaatcggtagcatttgagttaatagggttaagacttt 328  Q
    ||||| ||||||||||||   ||  |||||||| || ||||||| | ||||||||||| |||||||| |||||||| | |||| ||| | ||||||||||    
T  12560937 aagacgaggaaaatttgcggctaagtcaccacttgtcactctttgcattaaactttaaacttagaattggtagcatcttagttgataagattaagacttt 12560838  T
Q  329 gtttatcatatctttaacaactttaagtgaaaacttcaaaggtggaatgcattggatctttgatcttctgcagtagacatcaacatctgcatacatacaa 428  Q
    ||||||||| |||| ||||| |  |||||||||||| |||||||||||| |||  ||||||||||||||||| ||||| |||| ||||| |||||| |||    
T  12560837 gtttatcatgtcttaaacaagtccaagtgaaaactttaaaggtggaatgtattaaatctttgatcttctgcaatagacttcaaaatctgtatacattcaa 12560738  T
Q  429 ca 430  Q
    ||    
T  12560737 ca 12560736  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 9212410 - 9212483
Alignment:
Q  75 ggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||    
T  9212410 ggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaa 9212483  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 9365130 - 9365057
Alignment:
Q  75 ggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    ||||||||||||||| ||||||||||| || ||||||||| |||||| ||| ||||||||||||||||| ||||    
T  9365130 ggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcatcattgccccaagcgcaa 9365057  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 35970332 - 35970419
Alignment:
Q  61 ctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    |||||||||| |  ||||||||||||||| ||||||||||| || |||||||| ||||||| ||| ||| ||||||||||||| ||||    
T  35970332 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttataacctcattagctgcgtcattgccccaagcgcaa 35970419  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 9371481 - 9371408
Alignment:
Q  75 ggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    ||||||||||||||| ||||||||||| || ||||||||| |||||| ||| ||| ||||||||||||| ||||    
T  9371481 ggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaa 9371408  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 9290851 - 9290941
Alignment:
Q  58 agtctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    |||||||||| || |  ||||||||||||||| ||||||| ||| || ||||||||| |||||| ||| ||| ||||||||||||| ||||    
T  9290851 agtctaagagagggtttggaaatagttttcaaccagcaattgacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaa 9290941  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 9333220 - 9333136
Alignment:
Q  61 ctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtg 145  Q
    |||||||||| |  ||||||||||||||| ||||||||||| || ||| ||||   ||||||||| ||| |||||||||||||||    
T  9333220 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcagttaattcctcactagctgcgtcattgccccaagtg 9333136  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 9307021 - 9306955
Alignment:
Q  77 aaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaag 143  Q
    |||| |||||||| |||||||||||  | ||||||||  |||||||||| |||||||||| ||||||    
T  9307021 aaattgttttcaaccagcaatagacgtgcctcggttaatacctcactagctgcatcattggcccaag 9306955  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 6600878 - 6600965
Alignment:
Q  61 ctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    |||||||||| |  ||||||||||||||| ||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||    
T  6600878 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaa 6600965  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 38168950 - 38168863
Alignment:
Q  61 ctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    |||||||||| |  ||||||||||||||| ||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||    
T  38168950 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaa 38168863  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 40765083 - 40765170
Alignment:
Q  61 ctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    |||||||||| |  ||||||||||||||| ||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||    
T  40765083 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaa 40765170  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 40770948 - 40771035
Alignment:
Q  61 ctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    |||||||||| |  ||||||||||||||| ||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||    
T  40770948 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaa 40771035  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 40777660 - 40777746
Alignment:
Q  62 taagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    ||||||||| |  ||||||||||||||| ||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||    
T  40777660 taagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagaacctcattagctgcgtcattgccccaagcgcaa 40777746  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 37088298 - 37088385
Alignment:
Q  61 ctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    |||||||||| |  ||||||||||||||| ||||||||||| |  ||||||| |||||||| ||| ||| ||||||||||||| ||||    
T  37088298 ctaagagggggtttggaaatagttttcaaccagcaatagacgcacctcggttggaacctcattagctgcgtcattgccccaagcgcaa 37088385  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 31857613 - 31857700
Alignment:
Q  61 ctaagaggggatcaggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    |||||||||| |  ||||||||||||||| ||||||||||| || ||||||||| |||||| ||| ||| ||||||||||||| ||||    
T  31857613 ctaagagggggtttggaaatagttttcaaccagcaatagacgcgcctcggttagtacctcattagctgcgtcattgccccaagcgcaa 31857700  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 44916590 - 44916663
Alignment:
Q  75 ggaaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    ||||||||||||||| ||||||||||| || ||| ||||  |||||| ||| | | ||||||||||||| ||||    
T  44916590 ggaaatagttttcaaccagcaatagacgcgcctcagttattacctcattagctacgtcattgccccaagcgcaa 44916663  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 24694594 - 24694523
Alignment:
Q  77 aaatagttttcaatcagcaatagacacgtctcggttagaacctcactagatgcatcattgccccaagtgcaa 148  Q
    ||||||||||||| |||||||||||  | |||||||||||||||| ||| ||| ||||||||||||| ||||    
T  24694594 aaatagttttcaaccagcaatagacgtgcctcggttagaacctcattagttgcgtcattgccccaagcgcaa 24694523  T

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