View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18843_low_4 (Length: 344)
Name: NF18843_low_4
Description: NF18843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18843_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 47204580 - 47204901
Alignment:
| Q |
9 |
ataatactcggttcttctaatcttgacttcgttaattgtagctaggattgagtctgcttataaagttattcatttgcatgggctttttcttcaacgggct |
108 |
Q |
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| T |
47204580 |
ataatacccagttcttctaatcttgacttcgttaattgtagctaggattgagtctgcttataaagttattcatttgcatgggctttttcttcaacgggct |
47204679 |
T |
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| Q |
109 |
aaacacatcagttgtccataaatatatttttgacaccaatagtctagaagcacacaatatatttaaaacaaatctatcttaaaaataacttgaagtgcac |
208 |
Q |
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| T |
47204680 |
aaacacataagttgcccataaatatatttttgataccaatagtctagaagcacacaatatatttgaaacaaatctatcttaaaaataacttgaagtgcac |
47204779 |
T |
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| Q |
209 |
gacaacttaaaccgacaataaataatcttctaaaaacacaacgtaacttgagcataagagaacaaacaacatttctaaaaatatgcgagaaatatgatac |
308 |
Q |
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| T |
47204780 |
gacaacttaaaccgacaataaataatcttctaaaaacacaacgtaacttgagcataagagaacaaacaacatttctaaaaatatgtgagaaatatgatac |
47204879 |
T |
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| Q |
309 |
accaccttgagcctagaagatg |
330 |
Q |
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| T |
47204880 |
accaccttgagcctagaagatg |
47204901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 309
Target Start/End: Original strand, 6950941 - 6951206
Alignment:
| Q |
44 |
ttgtagctaggattgagtctgcttataaagttattcatttgcatgggctttttcttcaacgggctaaacacatcagttgtccataaatatatttttgaca |
143 |
Q |
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| T |
6950941 |
ttgtagctagggttgagtttccttatatagtcattcatatgcatgggctttttcttctttggattgaacacataaggtgtccataaatatatttcgga-a |
6951039 |
T |
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| Q |
144 |
ccaatagtctagaagcacacaatatatttaaaacaaatctatcttaaaaataacttgaagtgcacgacaacttaaaccgacaataaataatcttctaaaa |
243 |
Q |
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| T |
6951040 |
caaatcttctagaagcactcgatatatctgaagcaaatttttcttggaaatagcttgttgcgcacaataacttaaaccgatagcaattaaacttctacaa |
6951139 |
T |
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| Q |
244 |
acacaacgtaacttg-agcataagagaacaaacaacatttctaaaaatatgcgagaaatatgataca |
309 |
Q |
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| T |
6951140 |
acacaacgtagcttggagcacaagagaacaaacaacacttctaaaaatatgcgagaaatacgataca |
6951206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 55359156 - 55359244
Alignment:
| Q |
83 |
tgcatgggctttttcttcaacgggctaa-acacatcagttgtccataaatatatttttgacaccaatagtctagaagcacacaatatat |
170 |
Q |
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| T |
55359156 |
tgcatgagctttttcttcaatgggctaacacaatccagttgtccataattatattttcaacaacaatcttctagaaacacaaaatatat |
55359244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 21006648 - 21006510
Alignment:
| Q |
85 |
catgggctttttcttcaacgggctaaacacatcagttgtccataaatatatttttgacaccaatagtctagaagcacacaatatatttaaaacaaatcta |
184 |
Q |
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| T |
21006648 |
catggtctttttcttcaatgggcaaaacaattcagctatccataattatattttcaacaacaatcttttagaagcacaaaatatatttgttccaaatcta |
21006549 |
T |
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| Q |
185 |
tcttaaaaataacttgaagtgcacgacaacttaaaccga |
223 |
Q |
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| T |
21006548 |
ttttgaaaataacttcaagcacacggcaatttaaaccga |
21006510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 13986268 - 13986328
Alignment:
| Q |
123 |
tccataaatatatttttgacaccaatagtctagaagcacacaatatatttaaaacaaatct |
183 |
Q |
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| T |
13986268 |
tccataaatatattttcaacaacaatcttctagaaccacaaaatatatttaaaacaaatct |
13986328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 318
Target Start/End: Original strand, 2532997 - 2533082
Alignment:
| Q |
234 |
tcttctaaaaacacaacgtaacttg-agcataagagaacaaacaacatttctaaaaatatgcgagaaatatgatacaccaccttga |
318 |
Q |
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| T |
2532997 |
tcttctagaaacaccaagtaacttggagcacaagagaacatacatcgtatctagaaatatgcgatagatatgatacacaaccttga |
2533082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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