View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18843_low_5 (Length: 322)
Name: NF18843_low_5
Description: NF18843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18843_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 154 - 309
Target Start/End: Complemental strand, 41614085 - 41613938
Alignment:
| Q |
154 |
agagagacattgtaattgatcttttgtataccattataactttgtgaagtacataagtacataacgaccaaaggtacatgttcctttatgataatgtttg |
253 |
Q |
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| T |
41614085 |
agagagacattgtaattgatcttttgtataccattataactttgtgaagtacataa--------cgaccaaaggtacatgttcctttatgataatgtttg |
41613994 |
T |
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| Q |
254 |
ttaagtttacgacgaccataggtacatgttccttttaaattttccctcacacctgt |
309 |
Q |
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| T |
41613993 |
ttaagtttacgacgaccataggtacatgttccttttaaattttccctcacacctgt |
41613938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 41614205 - 41614157
Alignment:
| Q |
5 |
agccaaacaaatttgtttcattttatatgtagttttagaacatgtacga |
53 |
Q |
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| T |
41614205 |
agccaaacaaatttgtttcattttatatatagttttataacatgtacga |
41614157 |
T |
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