View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18843_low_7 (Length: 275)
Name: NF18843_low_7
Description: NF18843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18843_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 1994929 - 1995177
Alignment:
| Q |
19 |
aggtttcacaattgagttttcaaaagacaaaatgtattgagaaggtgctatttgttgtgaattagtaggacaattatattcttgagaaatgagagagttg |
118 |
Q |
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| T |
1994929 |
aggtttcataattgagttttcaaatgacaaaatgtattgagaaggtgctatttgttgtgaattagtaggacaattatattcttgagaaatgagagagttg |
1995028 |
T |
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| Q |
119 |
gaactattgctactcttgagaatgttctctagaattgtggggatgacacaaacattatcaaaaatattattattgatatattgtatggttgaagattgag |
218 |
Q |
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| T |
1995029 |
gaactattgctactcttgagaatgttctcttgaattgtggggatgacacaaacattatcaaaaatattattattgatatattgtatggttgaagattgag |
1995128 |
T |
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| Q |
219 |
aaatagaattatcaccctcaaaagagaaacatgattgttgcatattctt |
267 |
Q |
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| T |
1995129 |
aaatagaattatcaccctcaaaagagaaacatgattgttgcatattctt |
1995177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 1987982 - 1988061
Alignment:
| Q |
30 |
ttgagttttcaaaagacaaaatgtattgagaaggtgctatttgttgtgaattagtaggacaattatattcttgagaaatg |
109 |
Q |
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| T |
1987982 |
ttgagttttcaaaagataaaatgtattgagaaggtggtaattgttgtgaattagtagcccaagtatattcttgagcaatg |
1988061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 1988081 - 1988136
Alignment:
| Q |
162 |
tgacacaaacattatcaaaaatattattattgatatattgtatggttgaagattgagaa |
220 |
Q |
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| T |
1988081 |
tgacacaaacattgtcaacaatattattc---atatattgtatggttgaagattgagaa |
1988136 |
T |
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