View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18844_high_2 (Length: 560)
Name: NF18844_high_2
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18844_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 37 - 537
Target Start/End: Original strand, 40483002 - 40483490
Alignment:
| Q |
37 |
cgtcacatgcattgctgctagttgaaaaggcaaaccgaagtagtatataaataagcataaggaatggtaaagaatcaaaatagaaataacgacaagtaca |
136 |
Q |
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| T |
40483002 |
cgtcacatgcattgctc---gttgaaaaggcaaaccgaagtagtatata--------taaggaatggtcaagaatcaagatagaaataacgacaagtaca |
40483090 |
T |
|
| Q |
137 |
aaaagtatggaaaaacacaatcttacacaccaaacctaactaactactattataagtttataactaaactagccaccaatgctcttatcatagagagta- |
235 |
Q |
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| T |
40483091 |
aagagtatggaaaaacacaatcttacacaccaaacctaacta----ctattataagtttataactaaactagccaccaatgctcttatcatatagagtag |
40483186 |
T |
|
| Q |
236 |
--gggacatagaccctcttgttatttccaattcacactaaaatgtctttctttgcccccacgtgcaacacaccatagaacagtgaaccactgaataccac |
333 |
Q |
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| T |
40483187 |
tagggacatggaccctcttgttatttccaattcacactaaaatgtctttctttacccccacgtgcaacacaccatagaacagcgaaccactgaataccac |
40483286 |
T |
|
| Q |
334 |
agttaatgttccatactcaaagccaaacaaacatcacactaacagatacaaaagaaaatcttttgtggacaatccatcacaaaagactccctcatatata |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40483287 |
agttaatgttccatactcaaagccaaacaaacatcacactaacagatacaaaaaaaaatcttttgttgacaatccatcacaaaagactccctcatatata |
40483386 |
T |
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| Q |
434 |
acatatatattaatgcgtacacgaccataggaaaacgatagtagcaaaacgacaactgtgattttacaaaatatatattagaacttggaaagtattcatt |
533 |
Q |
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| T |
40483387 |
acatatatattaatgcgtacacgaccataggaaaacgatagtagcaaaacgacaactgtgatcttacaaaatatatattagaacttggaaagtattcatt |
40483486 |
T |
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