View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18844_high_4 (Length: 467)
Name: NF18844_high_4
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18844_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 6454766 - 6454332
Alignment:
| Q |
16 |
atgggaatgaagggttgtagtccatctcattcttggagctctaacacttcttttaacaccattaacgactcttgtatttcgcttgaaatcgcggccatag |
115 |
Q |
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| T |
6454766 |
atgggaatgaagggttgtagtccatctcattcttggagctctaacacttcttttaacaccattaacgactcttgtatttcgcttgaaatcgcggccatag |
6454667 |
T |
|
| Q |
116 |
atgtgaggttggaagtgttggttaaagtttcttgaaacaccttgaacttgatgacgatgaaggtgatgattatgatgatgtggattcatcaaatctgaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6454666 |
atgtgaggttggaagtgttggttaaagtttcttgaaaccccttgaacttgatgacgatgaaggtgatgattatgatgatgtggattcatcaaatctgaat |
6454567 |
T |
|
| Q |
216 |
ttccaaagcctaatctcaatgttgggtcacgttgatgaggatagataaatggattttcatggcttaactcacttccactactagctgaatcagaagtagt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6454566 |
ttccaaagcctaatctcaatgttgggtcacgttgatgaggatagataaatggattttcatggcttaattcacttccactactagctgaatcagaagtagt |
6454467 |
T |
|
| Q |
316 |
tgatattgaacatatatttgttattcctttgggttcagaatcagaaatattagaaggaagacttatgtttaaagataggtctggttctaacaaaggtgaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6454466 |
tgatattgaacatatatttgttattcctttgggttcagaatcagaaatattagaaggaagacttatgtttaaagataggtctggttctaacaaaggtgaa |
6454367 |
T |
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| Q |
416 |
aataaagtatgcattttaggatgtgatttaattag |
450 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6454366 |
aataaagtatgcattttaggatgtgatttaattag |
6454332 |
T |
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