View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18844_high_6 (Length: 406)

Name: NF18844_high_6
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18844_high_6
NF18844_high_6
[»] chr4 (1 HSPs)
chr4 (15-390)||(28665470-28665845)
[»] chr7 (1 HSPs)
chr7 (296-388)||(1033765-1033857)
[»] chr1 (6 HSPs)
chr1 (298-388)||(13888839-13888929)
chr1 (294-388)||(13891748-13891842)
chr1 (331-388)||(13895808-13895865)
chr1 (331-388)||(13892814-13892871)
chr1 (350-385)||(13890655-13890690)
chr1 (294-388)||(13893319-13893413)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 28665470 - 28665845
Alignment:
Q  15 tatacacactcaatcctgtttctatatcactttgtagtctttactaacaaactacaaacatctctaatcacatcaagaactttatatatgttccaaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28665470 tatacacactcaatcctgtttctatatcactttgtagtctttactaacaaactacaaacatctctaatcacataaagaactttatatatgttccaaatat 28665569  T
Q  115 gaaacaaaaactacnnnnnnnntaaatcaataatagcatcatcagccattagcgtaattatcaattgatatttaaccaatgatcaaatcaagtgtttttg 214  Q
    || |||||||||||        ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28665570 gagacaaaaactacaaaaaaaataaatcaataatagcatcatcagccatcagcataattatcaattgatatttaaccaatgatcaaatcaagtgtttttg 28665669  T
Q  215 aatttcagcagcatctctcctatagagattaactttgattccatgcttcatatacatagttaaagcaatctttggttccacagggtgattctccaccacc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28665670 aatttcagcagcatctctcctatagagattaactttgattccatgcttcatatacatagttaaagcaatctttggttccacagggtgattctccaccacc 28665769  T
Q  315 ttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacata 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28665770 ttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaacata 28665845  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 1033765 - 1033857
Alignment:
Q  296 agggtgattctccaccaccttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaaca 388  Q
    |||||||||||| || ||||| |||||||| |   ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  1033765 agggtgattctcaacaaccttaacatggtaaccaaatatgatgctagctgcaacatatttcatttgatagtatgcaaaatctttgcctaaaca 1033857  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 13888929 - 13888839
Alignment:
Q  298 ggtgattctccaccaccttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaaca 388  Q
    |||||||||| || ||||| |||||||| |   ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  13888929 ggtgattctcaacaaccttaacatggtaacgaaatatgatgctagctgcgacatatttcatttgatagtatgcaaaatctttgcctaaaca 13888839  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 13891842 - 13891748
Alignment:
Q  294 acagggtgattctccaccaccttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaaca 388  Q
    |||||||| ||||| || ||||| |||||||| |   |||||||  |||| |||||||||||||||||||| ||||||||| |||||||||||||    
T  13891842 acagggtgcttctcaacaaccttaacatggtaacgaaatatgatggtagctgcaacatatttcatttgatagtatgcaaaacctttgcctaaaca 13891748  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 13895808 - 13895865
Alignment:
Q  331 atatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaaca 388  Q
    |||||||  |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  13895808 atatgatgttagctgcaacatatttcatttgatagtatgcaaaatctttgcctaaaca 13895865  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 13892814 - 13892871
Alignment:
Q  331 atatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaaca 388  Q
    ||||||| ||||| |||||||||||| ||||||| |||||||||||||| ||||||||    
T  13892814 atatgatgctagctgcaacatatttcgtttgatagtatgcaaaatctttacctaaaca 13892871  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 385
Target Start/End: Original strand, 13890655 - 13890690
Alignment:
Q  350 atatttcatttgataatatgcaaaatctttgcctaa 385  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13890655 atatttcatttgatagtatgcaaaatctttgcctaa 13890690  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 13893413 - 13893319
Alignment:
Q  294 acagggtgattctccaccaccttcacatggtatctgtatatgatactagcagcaacatatttcatttgataatatgcaaaatctttgcctaaaca 388  Q
    |||||||||||||| || | ||| ||| |||| |   ||||||| ||||  ||||||||||||||||||   ||||||||||||||| |||||||    
T  13893413 acagggtgattctcaacaatcttaacacggtaacgaaatatgatgctagttgcaacatatttcatttgaatgtatgcaaaatctttggctaaaca 13893319  T

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