View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18844_high_7 (Length: 389)

Name: NF18844_high_7
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18844_high_7
NF18844_high_7
[»] chr1 (5 HSPs)
chr1 (242-370)||(10988620-10988748)
chr1 (164-373)||(10996064-10996289)
chr1 (104-153)||(10988771-10988820)
chr1 (98-150)||(10996333-10996385)
chr1 (194-262)||(10905787-10905855)
[»] chr7 (1 HSPs)
chr7 (67-104)||(23389642-23389679)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 242 - 370
Target Start/End: Complemental strand, 10988748 - 10988620
Alignment:
Q  242 gtaaaatgtgatgtatttttaacacacggatcttatgcatttaaactgtgagtatgaatttctaattcctatgataaaaaattcaaaaatgctttcctta 341  Q
    |||||||||||||||||||||  | |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10988748 gtaaaatgtgatgtatttttattatacggatcttatgcatttaaattgtgagtatgaatttctaattgctatgataaaaaattcaaaaatgctttcctta 10988649  T
Q  342 acatcctttgttatggtggcagtagtgtt 370  Q
    || ||||||||||||||||||||||||||    
T  10988648 acgtcctttgttatggtggcagtagtgtt 10988620  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 164 - 373
Target Start/End: Complemental strand, 10996289 - 10996064
Alignment:
Q  164 atcaacatctatgaaaattcataggaagac----aaagtcgtcgaccttgtcaaatgatagc---ttccacgatactgccgtgatgtaaaatgtgatgta 256  Q
    |||||||||||| |||||||||  ||||||    |||||| ||||||||| |||||| ||||   ||||||||||||||||||||||||||||| || ||    
T  10996289 atcaacatctattaaaattcatccgaagactataaaagtcttcgaccttgccaaatgctagcagcttccacgatactgccgtgatgtaaaatgtcatata 10996190  T
Q  257 tttttaac------acacg---gatcttatgcatttaaactgtgagtatgaatttctaattcctatgataaaaaattcaaaaatgctttccttaacatcc 347  Q
    |||||||       |||||   ||||  ||||||||||| ||||||||| |||||||| ||  |||||||||||||| |||||||||||||||||| |||    
T  10996189 tttttaattttattacacgccggatcacatgcatttaaattgtgagtattaatttctacttgttatgataaaaaatttaaaaatgctttccttaacgtcc 10996090  T
Q  348 tttgttatggtggcagtagtgttact 373  Q
    |||||||| ||||||  |||||||||    
T  10996089 tttgttatagtggcaacagtgttact 10996064  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 10988820 - 10988771
Alignment:
Q  104 tgtggtgccagttatttttgtttttgataagatatacgtggtgctagtac 153  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  10988820 tgtggtgctagttatttttgtttttgataagatatatgtggtgctagtac 10988771  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 10996385 - 10996333
Alignment:
Q  98 tatacatgtggtgccagttatttttgtttttgataagatatacgtggtgctag 150  Q
    |||| |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  10996385 tatatatgtggtgccagttatttttgtttttgataagctatatgtggtgctag 10996333  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 10905855 - 10905787
Alignment:
Q  194 aaagtcgtcgaccttgtcaaatgatagcttccacgatactgccgtgatgtaaaatgtgatgtattttta 262  Q
    |||||| ||||||||| |||| | ||||||||||  |||||| |||||||||||||| || ||||||||    
T  10905855 aaagtcttcgaccttgccaaaaggtagcttccacattactgcagtgatgtaaaatgtaatatattttta 10905787  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 23389642 - 23389679
Alignment:
Q  67 tagttgtacaaatatcatttctcttccaatatatacat 104  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  23389642 tagttgtacaaatatcatttctctttcaaaatatacat 23389679  T

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