View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18844_low_11 (Length: 285)
Name: NF18844_low_11
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18844_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 33204781 - 33204526
Alignment:
| Q |
19 |
ccttcatgatcaaagctgtgccttcccacagaatcatatcttataacttaatattcaagaaaaggagagcatccaagtgaatatgtagcaaaatccacac |
118 |
Q |
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| T |
33204781 |
ccttcatgatcaaagctgtgccttcccatagaatcatatcttataacttaatattcaagaaaaggagagcatccaagtgaatatgtagcaaaatccacac |
33204682 |
T |
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| Q |
119 |
tcaagttttaaacagtcttcctaaacaagattctaaccaataataatcagatgagccgtgggaccctttaaatttcacactcactctaattagatcaatt |
218 |
Q |
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| T |
33204681 |
tcaagttttaaacagtcttcctaaacaagattctaaccaataataatcagatgagccgtgggaccctttaaatttcacactcactctaattagatcaatt |
33204582 |
T |
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| Q |
219 |
atgcaagtaattaactttataacaaaacttgattatcagaggtaaaatctgttcat |
274 |
Q |
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| T |
33204581 |
atgcaagtaattaactttataacaaaacttgattatcagaggtaaaatctgttcat |
33204526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 33205497 - 33205408
Alignment:
| Q |
65 |
cttaatattcaagaaaaggagagcatccaagtgaatatgtagcaaaatccacactcaagttttaaacagtcttcctaaacaagattctaa |
154 |
Q |
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| T |
33205497 |
cttaatattcaagaaaaggagagcatctaagtcaatatgtgccaaagtttacactcaagtttcaaacagttttcctgaacaatattctaa |
33205408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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