View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18844_low_12 (Length: 270)
Name: NF18844_low_12
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18844_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 31853881 - 31853819
Alignment:
| Q |
191 |
gtattgagaggatcatataattcccacaatgggtacgaaacatttttccaaatataaatatag |
253 |
Q |
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| T |
31853881 |
gtattgagaggatcatataattcccacaatgggtacgaaacatttttccaaatataaatatag |
31853819 |
T |
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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 31854059 - 31854008
Alignment:
| Q |
14 |
aatatatacatacaatggtggatttagatctctcaagtttgaaagaacttga |
65 |
Q |
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| T |
31854059 |
aatatatacatacaatggtggatttagatctctcaactttgaaagaacttga |
31854008 |
T |
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