View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18844_low_13 (Length: 268)
Name: NF18844_low_13
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18844_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 11098946 - 11099191
Alignment:
| Q |
1 |
agaaatataaaagtcatggtgatgtgaagggcctcctcattcttagaatcctatatgtagaggcagagagtgtctcatccttaatcaataaaagaataat |
100 |
Q |
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| T |
11098946 |
agaaatataaaagtcatggtgatgtgaagggcctcctcattcttagaatcctatatgtagaggcagagagtgtctcatccttaatcaataaaagaataat |
11099045 |
T |
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| Q |
101 |
tatacgtaggttttcatatgtccggccattttgcaacccctcgtccaccatggccccatcacttacggtgatcggcaaggaatccagagtttcgctagca |
200 |
Q |
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| T |
11099046 |
tacacgtaggttttcatatgtcccgccattttgcaacccctcgtccaccatggccccatcacttacgatgatcagcaaggaatccagagtttccctagca |
11099145 |
T |
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| Q |
201 |
tgcttatcctcaatcaataccttttgattcgtcagccttgggggtt |
246 |
Q |
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| T |
11099146 |
tgcttatcctcaatcaataccttttgattcgtcagccttgggggtt |
11099191 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 36693349 - 36693438
Alignment:
| Q |
7 |
ataaaagtcatggtgatgtgaagggcctcctcattcttagaatcctatatgtagaggcagagagtgtctcatccttaatcaataaaagaa |
96 |
Q |
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| T |
36693349 |
ataaaagttatggtgctctaaagggcctcctccttcttggaatcctatatgcggtggcagggagtatctcagcctgaatcatcaaaagaa |
36693438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 36682383 - 36682471
Alignment:
| Q |
8 |
taaaagtcatggtgatgtgaagggcctcctcattcttagaatcctatatgtagaggcagagagtgtctcatccttaatcaataaaagaa |
96 |
Q |
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| T |
36682383 |
taaaagttatggtgctctaaagggcctcctccttcttggaatcctatatgcggtggcagggagtatctcagcctgaatcatcaaaagaa |
36682471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 435592 - 435681
Alignment:
| Q |
7 |
ataaaagtcatggtgatgtgaagggcctcctcattcttagaatcctatatgtagaggcagagagtgtctcatccttaatcaataaaagaa |
96 |
Q |
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|||||||| |||||| | | |||||||||||| ||||| |||||||||||| | ||||| |||| ||||| ||| ||||| ||||||| |
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| T |
435592 |
ataaaagttatggtgctctaaagggcctcctccttcttggaatcctatatgcggtggcagggagtatctcagcctgaatcatcaaaagaa |
435681 |
T |
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