View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18844_low_15 (Length: 241)
Name: NF18844_low_15
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18844_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 33658109 - 33657894
Alignment:
| Q |
14 |
cattaataacttgtccggtagaaacccaagaatccaaggaggaaataacttgggtttctatataagggatcaatttcttgattgattcaggagaaagtga |
113 |
Q |
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| T |
33658109 |
cattaataacttgtccggtagaaacccaagaatccaaggaggaaataacttgggtttctatataagggatcaatttcttgattgattcaggagaaagtga |
33658010 |
T |
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| Q |
114 |
ggtttgaacaagtttcctaatgcgagtgtggtaatctccttggtgaaagaataatgcagaagaaccaataagtttctctttgcttttggggtatgtaggc |
213 |
Q |
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| T |
33658009 |
ggtttgaacaagtttcctaatgcgtgtgtggtaatctccttggtgaaagaacaatgcagaagaaccaataagcttctctttgcttttggggtatgtaggc |
33657910 |
T |
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| Q |
214 |
ttaaacaaatgagaat |
229 |
Q |
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|||||||||||||||| |
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| T |
33657909 |
ttaaacaaatgagaat |
33657894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 33698636 - 33698429
Alignment:
| Q |
22 |
acttgtccggtagaaacccaagaatccaaggaggaaataacttgggtttctatataagggatcaatttcttgattgattcaggagaaagtgaggtttgaa |
121 |
Q |
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|||||||| |||||||||| || || || |||||||| |||| |||| |||| ||||||||||||||||||||||||||||| ||| ||| |||||| |
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| T |
33698636 |
acttgtccaatagaaacccaggattctaatgaggaaatgacttcattttcaatatcagggatcaatttcttgattgattcaggagcaagagagttttgaa |
33698537 |
T |
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| Q |
122 |
caagtttcctaatgcgagtgtggtaatctccttggtgaaagaataatgcagaagaaccaataagtttctctttgcttttggggtatgtaggcttaaacaa |
221 |
Q |
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| T |
33698536 |
cgagttttctgatgcgagtgtggtaatctccttggtgaaagaataatgcagaagaaccaataagtttctctttgcttttggggtatgtaggcttaaacaa |
33698437 |
T |
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| Q |
222 |
atgagaat |
229 |
Q |
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|||||||| |
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| T |
33698436 |
atgagaat |
33698429 |
T |
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