View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18844_low_3 (Length: 519)

Name: NF18844_low_3
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18844_low_3
NF18844_low_3
[»] chr1 (3 HSPs)
chr1 (1-503)||(48044058-48044592)
chr1 (67-186)||(48051839-48051958)
chr1 (2-51)||(48057257-48057306)


Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 48044058 - 48044592
Alignment:
Q  1 aacaacattgatgtgacaatatcgtcttaatagttttcacattgatgcaattgattctattt--------------------gtgatgcagattgtgaca 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||    
T  48044058 aacaacattgatgtgacaatatcgtcttaatagttttcacattgatgcaattgattctatttgtagctttcggaggggatttgtgatgcagattgtgaca 48044157  T
Q  81 tgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagataggtcacgc 180  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48044158 tgccatttggtgacgtgccatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagataggtcacgc 48044257  T
Q  181 taatttgatttgaataattctccgagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgtttctccaacctttcctgt 280  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48044258 ttatttgatttgaataattctcagagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgtttctccaacctttcctgt 48044357  T
Q  281 tcgacaaacatttgaccccttgtgagaatgcagttgatcaattaggttgtgtcatgtgtgagacccaagcttaagatgctttcactcctctgtgcgtctc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48044358 tcgacaaacatttgaccccttgtgagaatgcagttgatcaattaggttgtgtcatgtgtgagacccaagcttaagatgctttcactcctctgtgcgtctc 48044457  T
Q  381 ctatcttcaattgcatcttct------------attgtgattcttgtcacctgattgtgggtgtcataaattattgatcccattctatatcccgtaggcc 468  Q
    |||||||| ||||||||||||            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48044458 ctatcttctattgcatcttctattgcgacaatcattgtgattcttgtcacctgattgtgggcgtcataaattattgatcccattctatatcccgtaggcc 48044557  T
Q  469 ggaccatcgttgcaaacctcaatcacagatcaatg 503  Q
    |||||||| |||||||||||||||||||| |||||    
T  48044558 ggaccatcattgcaaacctcaatcacagagcaatg 48044592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 67 - 186
Target Start/End: Original strand, 48051839 - 48051958
Alignment:
Q  67 tgcagattgtgacatgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagg 166  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||   |||||||||| |||| |||||    
T  48051839 tgcagattgtgacatgccatttggtgacgtgccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcatatagagg 48051938  T
Q  167 gagataggtcacgctaattt 186  Q
    ||||||| ||| ||||||||    
T  48051939 gagatagatcatgctaattt 48051958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 48057257 - 48057306
Alignment:
Q  2 acaacattgatgtgacaatatcgtcttaatagttttcacattgatgcaat 51  Q
    |||| |||||||  |||||||| || ||||||||||||||||||||||||    
T  48057257 acaaaattgatgaaacaatatcatcctaatagttttcacattgatgcaat 48057306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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