View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18844_low_5 (Length: 451)

Name: NF18844_low_5
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18844_low_5
NF18844_low_5
[»] chr8 (27 HSPs)
chr8 (46-281)||(39885901-39886136)
chr8 (45-270)||(39884614-39884839)
chr8 (46-281)||(26720074-26720308)
chr8 (46-186)||(3157957-3158097)
chr8 (48-229)||(15279510-15279691)
chr8 (48-229)||(15459879-15460060)
chr8 (47-228)||(26719385-26719569)
chr8 (49-229)||(5461936-5462116)
chr8 (46-215)||(25264339-25264508)
chr8 (46-104)||(17707450-17707508)
chr8 (45-104)||(36899896-36899955)
chr8 (172-281)||(27824331-27824440)
chr8 (45-105)||(22714050-22714110)
chr8 (46-104)||(357976-358034)
chr8 (46-104)||(17706164-17706222)
chr8 (47-210)||(25265801-25265964)
chr8 (45-94)||(1650222-1650271)
chr8 (47-99)||(45448499-45448551)
chr8 (46-210)||(33295342-33295505)
chr8 (400-435)||(39885746-39885781)
chr8 (45-215)||(33293937-33294108)
chr8 (46-104)||(36901179-36901237)
chr8 (45-102)||(359318-359375)
chr8 (46-104)||(7272899-7272957)
chr8 (174-215)||(60997-61038)
chr8 (45-106)||(7274651-7274712)
chr8 (48-104)||(21142480-21142536)
[»] chr4 (55 HSPs)
chr4 (50-281)||(22308963-22309194)
chr4 (46-270)||(22307670-22307894)
chr4 (47-281)||(24919052-24919282)
chr4 (72-277)||(9563164-9563369)
chr4 (46-270)||(25351636-25351857)
chr4 (45-204)||(33607466-33607625)
chr4 (45-227)||(42889690-42889871)
chr4 (45-186)||(42977196-42977337)
chr4 (45-214)||(44251603-44251772)
chr4 (45-186)||(48713382-48713523)
chr4 (46-215)||(55948844-55949013)
chr4 (45-210)||(18597630-18597795)
chr4 (46-203)||(19994497-19994654)
chr4 (46-215)||(19995945-19996114)
chr4 (45-186)||(42978839-42978980)
chr4 (47-186)||(32082553-32082692)
chr4 (55-225)||(9561854-9562023)
chr4 (46-208)||(44253090-44253252)
chr4 (118-215)||(55906606-55906703)
chr4 (49-182)||(10337106-10337239)
chr4 (45-225)||(54536577-54536758)
chr4 (48-161)||(33609287-33609402)
chr4 (46-186)||(54123465-54123605)
chr4 (45-159)||(21354723-21354838)
chr4 (115-281)||(25350565-25350728)
chr4 (50-103)||(54534981-54535034)
chr4 (45-105)||(18597855-18597915)
chr4 (45-104)||(4906127-4906186)
chr4 (45-186)||(10338088-10338231)
chr4 (45-104)||(38157018-38157077)
chr4 (47-104)||(4931998-4932055)
chr4 (45-102)||(4933335-4933392)
chr4 (398-435)||(22308808-22308845)
chr4 (45-102)||(29756270-29756327)
chr4 (49-186)||(48711860-48711997)
chr4 (46-106)||(2671540-2671600)
chr4 (47-102)||(4907465-4907520)
chr4 (46-104)||(29757610-29757668)
chr4 (115-209)||(53355168-53355262)
chr4 (46-104)||(55019359-55019417)
chr4 (48-101)||(23702398-23702451)
chr4 (46-98)||(11148349-11148401)
chr4 (46-106)||(34538125-34538185)
chr4 (48-104)||(35785166-35785222)
chr4 (46-106)||(55947359-55947419)
chr4 (49-104)||(35786682-35786737)
chr4 (115-186)||(54121895-54121966)
chr4 (52-106)||(4284391-4284445)
chr4 (46-104)||(23703865-23703923)
chr4 (50-88)||(55017743-55017781)
chr4 (52-101)||(4241671-4241720)
chr4 (45-106)||(34539798-34539858)
chr4 (50-94)||(39665274-39665318)
chr4 (45-89)||(39929371-39929415)
chr4 (115-186)||(42888356-42888425)
[»] chr7 (46 HSPs)
chr7 (46-281)||(13420111-13420346)
chr7 (47-281)||(37348735-37348969)
chr7 (50-270)||(37350037-37350260)
chr7 (46-187)||(12180558-12180699)
chr7 (115-281)||(21017606-21017772)
chr7 (47-186)||(46245122-46245261)
chr7 (48-210)||(8231530-8231692)
chr7 (44-210)||(31392055-31392221)
chr7 (45-215)||(45276408-45276577)
chr7 (46-215)||(21716510-21716679)
chr7 (45-161)||(12178481-12178597)
chr7 (45-213)||(31393552-31393720)
chr7 (47-210)||(45277863-45278026)
chr7 (46-137)||(46246544-46246635)
chr7 (45-210)||(8230068-8230233)
chr7 (46-154)||(37133601-37133709)
chr7 (45-215)||(40028455-40028625)
chr7 (46-210)||(21715071-21715235)
chr7 (48-168)||(37131836-37131956)
chr7 (45-104)||(41384147-41384206)
chr7 (46-104)||(706742-706800)
chr7 (50-184)||(11671208-11671342)
chr7 (46-94)||(31734766-31734814)
chr7 (46-106)||(38758317-38758377)
chr7 (46-210)||(40029925-40030089)
chr7 (46-104)||(708154-708212)
chr7 (46-104)||(37547933-37547991)
chr7 (46-104)||(41385811-41385869)
chr7 (45-106)||(3704396-3704457)
chr7 (47-104)||(11669841-11669898)
chr7 (47-104)||(41593205-41593262)
chr7 (45-104)||(32429872-32429931)
chr7 (50-210)||(32881119-32881279)
chr7 (47-106)||(38756655-38756714)
chr7 (46-104)||(27160304-27160362)
chr7 (46-104)||(27161997-27162055)
chr7 (401-435)||(37349089-37349123)
chr7 (49-186)||(14774515-14774651)
chr7 (49-186)||(15224968-15225104)
chr7 (47-106)||(20208464-20208523)
chr7 (115-186)||(30792750-30792821)
chr7 (45-104)||(41591513-41591572)
chr7 (46-99)||(15136946-15136999)
chr7 (47-104)||(28556246-28556303)
chr7 (45-215)||(32882606-32882775)
chr7 (45-89)||(25008090-25008134)
[»] chr1 (52 HSPs)
chr1 (115-281)||(35973099-35973265)
chr1 (47-229)||(7185733-7185915)
chr1 (45-267)||(18309083-18309305)
chr1 (45-186)||(50316970-50317111)
chr1 (45-210)||(16673152-16673317)
chr1 (46-209)||(28920552-28920715)
chr1 (45-215)||(33257879-33258048)
chr1 (45-215)||(33278051-33278220)
chr1 (46-215)||(7655155-7655324)
chr1 (50-186)||(13211032-13211168)
chr1 (46-184)||(7184322-7184460)
chr1 (45-215)||(28919081-28919251)
chr1 (47-187)||(24438866-24439007)
chr1 (45-161)||(24437072-24437188)
chr1 (46-106)||(22684150-22684210)
chr1 (46-210)||(36145343-36145507)
chr1 (47-210)||(33259268-33259431)
chr1 (47-210)||(33279427-33279590)
chr1 (46-104)||(50315317-50315375)
chr1 (46-99)||(9419825-9419878)
chr1 (45-98)||(10708028-10708081)
chr1 (47-161)||(46604439-46604552)
chr1 (45-105)||(12095875-12095935)
chr1 (45-104)||(8323441-8323500)
chr1 (45-104)||(31815772-31815831)
chr1 (45-104)||(32847812-32847871)
chr1 (47-210)||(7653686-7653849)
chr1 (48-106)||(16592022-16592080)
chr1 (115-184)||(3894084-3894153)
chr1 (47-185)||(41668273-41668411)
chr1 (48-104)||(9626469-9626525)
chr1 (46-102)||(26734425-26734481)
chr1 (46-106)||(31321008-31321068)
chr1 (46-106)||(33981503-33981563)
chr1 (50-106)||(40767618-40767674)
chr1 (50-94)||(44268891-44268935)
chr1 (45-104)||(11431331-11431390)
chr1 (46-105)||(12097941-12098000)
chr1 (115-210)||(19057763-19057858)
chr1 (45-104)||(31809987-31810046)
chr1 (47-104)||(8322521-8322578)
chr1 (45-106)||(28360767-28360828)
chr1 (46-94)||(31028676-31028724)
chr1 (46-94)||(31035646-31035694)
chr1 (47-94)||(10612142-10612189)
chr1 (127-194)||(13209655-13209722)
chr1 (47-106)||(13222914-13222973)
chr1 (45-104)||(35383058-35383117)
chr1 (67-106)||(43882075-43882114)
chr1 (45-106)||(13229273-13229335)
chr1 (46-91)||(18604583-18604628)
chr1 (45-94)||(33755328-33755377)
[»] chr3 (30 HSPs)
chr3 (50-281)||(22942339-22942572)
chr3 (45-184)||(30700294-30700433)
chr3 (47-186)||(31796754-31796893)
chr3 (45-186)||(40499172-40499313)
chr3 (45-137)||(41081800-41081892)
chr3 (45-215)||(33734393-33734563)
chr3 (45-215)||(53527968-53528138)
chr3 (41-210)||(33732959-33733128)
chr3 (47-186)||(48568450-48568589)
chr3 (46-186)||(41083190-41083331)
chr3 (45-137)||(48566994-48567086)
chr3 (46-104)||(32558918-32558976)
chr3 (47-104)||(32613883-32613941)
chr3 (47-137)||(31795373-31795463)
chr3 (45-101)||(25529922-25529978)
chr3 (46-105)||(3150020-3150079)
chr3 (45-104)||(32615648-32615707)
chr3 (45-209)||(53529431-53529595)
chr3 (41-106)||(55196568-55196633)
chr3 (45-104)||(3026883-3026942)
chr3 (45-186)||(31656951-31657093)
chr3 (50-159)||(41879927-41880036)
chr3 (45-89)||(45981405-45981449)
chr3 (49-104)||(24613614-24613669)
chr3 (45-104)||(33780655-33780714)
chr3 (48-94)||(24612279-24612325)
chr3 (46-88)||(32559901-32559943)
chr3 (50-104)||(33781496-33781550)
chr3 (45-89)||(8391399-8391443)
chr3 (45-101)||(33551586-33551641)
[»] chr5 (23 HSPs)
chr5 (44-186)||(16308562-16308705)
chr5 (46-186)||(27756705-27756845)
chr5 (48-227)||(18201224-18201403)
chr5 (48-229)||(16309976-16310157)
chr5 (45-186)||(38624714-38624855)
chr5 (45-215)||(30333899-30334068)
chr5 (49-209)||(25916175-25916335)
chr5 (47-210)||(1418832-1418995)
chr5 (47-215)||(30332283-30332451)
chr5 (45-137)||(38626139-38626231)
chr5 (47-189)||(8874191-8874333)
chr5 (47-168)||(17554941-17555063)
chr5 (49-184)||(36619546-36619682)
chr5 (46-186)||(39103331-39103471)
chr5 (51-105)||(28592081-28592135)
chr5 (44-106)||(33489899-33489961)
chr5 (46-103)||(28592421-28592477)
chr5 (48-186)||(39101716-39101854)
chr5 (49-186)||(8872522-8872658)
chr5 (48-104)||(35929523-35929579)
chr5 (46-104)||(9672353-9672411)
chr5 (45-106)||(11771196-11771257)
chr5 (118-215)||(25914561-25914658)
[»] scaffold1176 (1 HSPs)
scaffold1176 (45-204)||(2049-2208)
[»] chr6 (23 HSPs)
chr6 (46-221)||(10707675-10707843)
chr6 (45-184)||(1256712-1256851)
chr6 (49-281)||(10699760-10699996)
chr6 (45-186)||(1258359-1258501)
chr6 (47-186)||(8745432-8745571)
chr6 (49-189)||(8752717-8752857)
chr6 (48-210)||(19084016-19084178)
chr6 (45-104)||(11065656-11065715)
chr6 (47-161)||(1443417-1443531)
chr6 (115-280)||(10711742-10711907)
chr6 (150-221)||(10711317-10711387)
chr6 (47-105)||(4496505-4496563)
chr6 (46-104)||(7796748-7796806)
chr6 (46-104)||(19402124-19402182)
chr6 (45-94)||(843533-843582)
chr6 (115-184)||(4296328-4296397)
chr6 (45-106)||(7678647-7678708)
chr6 (46-99)||(19597984-19598037)
chr6 (40-104)||(19579885-19579949)
chr6 (40-104)||(19596336-19596400)
chr6 (115-210)||(19082734-19082829)
chr6 (47-104)||(842186-842243)
chr6 (45-94)||(28048978-28049027)
[»] chr2 (53 HSPs)
chr2 (115-221)||(169165-169276)
chr2 (49-186)||(44465010-44465147)
chr2 (45-186)||(45499303-45499444)
chr2 (50-186)||(22053128-22053263)
chr2 (46-161)||(6844042-6844157)
chr2 (47-186)||(16142226-16142365)
chr2 (45-185)||(38729983-38730124)
chr2 (47-215)||(1841646-1841814)
chr2 (45-200)||(35588125-35588278)
chr2 (46-186)||(40303292-40303432)
chr2 (46-225)||(15346863-15347042)
chr2 (45-184)||(28563374-28563513)
chr2 (44-210)||(13947745-13947910)
chr2 (44-210)||(14088934-14089099)
chr2 (47-137)||(40304731-40304821)
chr2 (45-202)||(15348342-15348499)
chr2 (45-186)||(38728183-38728323)
chr2 (46-225)||(44421223-44421402)
chr2 (46-137)||(45493001-45493092)
chr2 (46-137)||(45500743-45500834)
chr2 (48-157)||(22060428-22060538)
chr2 (45-210)||(1840155-1840320)
chr2 (46-106)||(28165657-28165717)
chr2 (46-161)||(16143541-16143656)
chr2 (50-229)||(44463569-44463746)
chr2 (50-184)||(472723-472857)
chr2 (118-215)||(1035363-1035460)
chr2 (45-105)||(44097354-44097414)
chr2 (49-161)||(7317392-7317504)
chr2 (45-104)||(18224847-18224906)
chr2 (45-104)||(22054332-22054391)
chr2 (47-104)||(22060162-22060219)
chr2 (46-106)||(44492311-44492371)
chr2 (45-106)||(6842713-6842774)
chr2 (45-106)||(28167330-28167391)
chr2 (47-104)||(28563957-28564014)
chr2 (52-105)||(44904532-44904585)
chr2 (45-101)||(8803306-8803362)
chr2 (45-157)||(9660844-9660955)
chr2 (49-104)||(40127242-40127297)
chr2 (45-104)||(43516396-43516455)
chr2 (45-104)||(43518079-43518138)
chr2 (48-87)||(44095359-44095398)
chr2 (45-104)||(44820932-44820991)
chr2 (47-105)||(10343988-10344046)
chr2 (127-229)||(44419885-44419987)
chr2 (45-106)||(44906135-44906196)
chr2 (47-99)||(9262899-9262951)
chr2 (46-90)||(9662192-9662235)
chr2 (151-211)||(12027999-12028059)
chr2 (46-106)||(16288974-16289034)
chr2 (46-106)||(34591724-34591784)
chr2 (49-93)||(42827319-42827363)
[»] scaffold1118 (1 HSPs)
scaffold1118 (55-161)||(2420-2526)
[»] scaffold0288 (1 HSPs)
scaffold0288 (118-281)||(19543-19705)
[»] scaffold0280 (1 HSPs)
scaffold0280 (46-161)||(12130-12246)
[»] scaffold0672 (1 HSPs)
scaffold0672 (115-209)||(426-520)
[»] scaffold0129 (1 HSPs)
scaffold0129 (46-104)||(4259-4317)
[»] scaffold0512 (1 HSPs)
scaffold0512 (123-209)||(10023-10109)
[»] scaffold0489 (1 HSPs)
scaffold0489 (46-106)||(6815-6875)
[»] scaffold0633 (1 HSPs)
scaffold0633 (47-105)||(6895-6953)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 39886136 - 39885901
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  39886136 aggcttaaatatgtaaatggtccctgtaagttcgcgtgtttttggttttagtccctgtatctttttttattctaaaacaacccctgtaagttataagcat 39886037  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  39886036 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggcagatatcgctgatgt 39885937  T
Q  246 agcattccatatgctgagtcacaaatttagagggac 281  Q
    | ||||||||||||||||||||||| ||||||||||    
T  39885936 atcattccatatgctgagtcacaaaattagagggac 39885901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 45 - 270
Target Start/End: Original strand, 39884614 - 39884839
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        |||||||| ||||| |||||||||||||||    
T  39884614 aaggcttaaatatgtaaatggtccctgtaagttcgcgtgtttttggttttagtccctgtatctttttttgttctaaaataacccttgtaagttataagca 39884713  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatg 244  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||| ||||  ||||||||    
T  39884714 ttttggttttagtccctgccttcataatctgttacaaaaacgtctatgtggcaaacggaggatgacttgacgacgtatgatgtggcagataacgctgatg 39884813  T
Q  245 tagcattccatatgctgagtcacaaa 270  Q
    |  | ||| |||||||||||||||||    
T  39884814 tgtcgttctatatgctgagtcacaaa 39884839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 26720308 - 26720074
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||||||||||||||||  |||   ||||||||||||||||||||||| ||||||| ||         | | ||| |||||||||||||||||||   |    
T  26720308 aggcttaaatatgtaaataatccccataagttcgcgtgtttttggttttcgtccctgcatattttttgttgcgaaa-caacccctgtaagttataaatgt 26720210  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgt 245  Q
    ||||||||| ||| |||||| ||| || ||||||||||||||||||||||||||| ||| || || |||||||||||||| ||| | | | || ||||||    
T  26720209 tttggttttggtctctgccgccattatttgttacaaaaacgtctatgtggcaaacagagcataacgtggcgacgtgtgacatggaaaacgacgttgatgt 26720110  T
Q  246 agcattccatatgctgagtcacaaatttagagggac 281  Q
      | ||||||||||||||||||||| ||||||||||    
T  26720109 gtcgttccatatgctgagtcacaaagttagagggac 26720074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 3158097 - 3157957
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||        ||||||||||  ||||||||||||||| |||    
T  3158097 aggcttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacagaccctgtaagttataaacat 3157998  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    |||| |||  |||||||||||||  |||||||||| |||||    
T  3157997 tttgctttcggtccctgccgtcagcatctgttacacaaacg 3157957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 15279691 - 15279510
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattt 147  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||  ||||||        || |||||||  ||||| || |||||||| ||     
T  15279691 gcttaaatatgtaaatcgtccttgtaagttcgcgtgtttttggttttcgtcattgtatctttttttgttttaaaacagaccctgcaaattataagcctta 15279592  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtgg 229  Q
    || |||| |||||| ||||||| |||||||||||||| |  |||||| | |||||  | |||| ||||||||||||| ||||    
T  15279591 tgcttttggtccctaccgtcatcatctgttacaaaaatgcttatgtgtctaacggcagctgacgtggcgacgtgtgatgtgg 15279510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 15460060 - 15459879
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattt 147  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||  ||||||        || |||||||  ||||| || |||||||| ||     
T  15460060 gcttaaatatgtaaatcgtccttgtaagttcgcgtgtttttggttttcgtcattgtatctttttttgttttaaaacagaccctgcaaattataagcctta 15459961  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtgg 229  Q
    || |||| |||||| ||||||| |||||||||||||| |  |||||| | |||||  | |||| ||||||||||||| ||||    
T  15459960 tgcttttggtccctaccgtcatcatctgttacaaaaatgcttatgtgtctaacggcagctgacgtggcgacgtgtgatgtgg 15459879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 26719385 - 26719569
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    |||||| ||||||||||  ||| ||||||||||||||||||| ||||| |||| ||||||        ||  |||||||| ||||||||||||||   ||    
T  26719385 ggcttatatatgtaaatcatccatgtaagttcgcgtgttttttgttttcgtccttgtatctttttttcttgcaaaacaactcctgtaagttataaatgtt 26719484  T
Q  147 ttggttttagtccctgccgtcataatc---tgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtg 228  Q
    |||||||| |||| || |||||| |||   ||||||||||||||||||||| |||||  |||||||| || | ||||||||||||    
T  26719485 ttggttttggtccttgtcgtcatcatcatttgttacaaaaacgtctatgtgacaaacccaggatgacgtgccaacgtgtgacgtg 26719569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 5461936 - 5462116
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    ||||||||||||||| |||   |||||||||||||||||| ||||| |||  ||||||        ||||||||||  |||||||| |||||| ||||||    
T  5461936 cttaaatatgtaaatcgtcaccgtaagttcgcgtgttttttgttttcgtctttgtatctttttttgttctaaaacagaccctgtaatttataaacatttt 5462035  T
Q  149 ggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtgg 229  Q
    | |||| |||||||||||||  ||||||||||||||||  ||||||    ||||  | ||||||||||| |||||||||||    
T  5462036 gcttttggtccctgccgtcagcatctgttacaaaaacgcttatgtgtatgacggcagctgacatggcgatgtgtgacgtgg 5462116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 25264339 - 25264508
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| ||||| || |||||||||||||||| |||| ||||||        || |||||||| |||||||| |||  | | |    
T  25264339 aggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttttgttttaaaacaatccctgtaaattaataactt 25264438  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    |||| |||| |||||| ||||||   || ||||||||||||   ||||||||||||||||||||| ||||    
T  25264439 tttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgacgtggc 25264508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 17707508 - 17707450
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  17707508 aggcttaaatatgtaaatggtccatgtaatttagcgtgtttttggttttagtccctgta 17707450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 36899896 - 36899955
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||    
T  36899896 aaggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttggttttagtccctgta 36899955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 27824440 - 27824331
Alignment:
Q  172 tctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgtagcattccatatgctgagtcacaaat 271  Q
    |||||||||||||||| ||||||||||||||||| |||| |||    |||||| ||||||||||  | ||||||  ||||| | ||| |||||||||||     
T  27824440 tctgttacaaaaacgtatatgtggcaaacggaggttgacgtggttgtgtgtgatgtggtagatgatgttgatgtgtcattctagatgttgagtcacaaag 27824341  T
Q  272 ttagagggac 281  Q
    ||||||||||    
T  27824340 ttagagggac 27824331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 22714110 - 22714050
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    ||||||||||||||||||| | || |||||||||| |||||||||||||| ||||||||||    
T  22714110 aaggcttaaatatgtaaatcgcccctgtaagttcgtgtgtttttggttttcgtccctgtat 22714050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 357976 - 358034
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||||    
T  357976 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 17706164 - 17706222
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||| ||||    
T  17706164 aggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttggttttagtccttgta 17706222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 25265964 - 25265801
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||  ||||| || |||||||||| ||||| |||||||||||        || |||||||| |||| |||||||  | | ||    
T  25265964 ggcttaaatatgtaaatcgtctctgtaatttggcgtgttttttgttttcgtccctgtatctttttttgttttaaaacaatccctataagttaataacttt 25265865  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||| |||| |||||| ||||||   || ||||||||||||   |||||||||||||| ||||||    
T  25265864 ttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggacgatgac 25265801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 1650271 - 1650222
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  1650271 aaggcttaaatatgtaaaccgtccttgtaagttcgcgtgtttttagtttt 1650222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 45448551 - 45448499
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtcc 99  Q
    |||||||||||||||| ||||| | ||||||||||||||||||||||| ||||    
T  45448551 ggcttaaatatgtaaaaggtccctctaagttcgcgtgtttttggttttcgtcc 45448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 33295505 - 33295342
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||  ||||| || |||||||||| ||||| |||||||||||        |||||||||||||| |||||||||  | | |    
T  33295505 aggcttaaatatgtaaatcgtctctgtaatttggcgtgttttttgtttttgtccctgtatcttttttg-ttctaaaacaacccttgtaagttaataactt 33295407  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    |||| |||  |||||| ||||||   || ||||||||||||   |||||||||||  ||||||||    
T  33295406 tttgatttccgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacaaaggatgac 33295342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 400 - 435
Target Start/End: Complemental strand, 39885781 - 39885746
Alignment:
Q  400 aaacccataaatttatcaacaaacatcaacatcact 435  Q
    ||||||||||||||||||||||||||||||||||||    
T  39885781 aaacccataaatttatcaacaaacatcaacatcact 39885746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 33293937 - 33294108
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc-nnnnnnnattctaaaacaacccctgtaagttataagc 143  Q
    ||||||||||||| ||||| |||||||||| ||  || |||||||||||| |||| ||||||         |||||||||||||||| ||| |||  | |    
T  33293937 aaggcttaaatatataaatcgtccttgtaatttgacgcgtttttggttttcgtccttgtatcttttttttgttctaaaacaacccctataaattaataac 33294036  T
Q  144 attttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
     ||||| |||| |||||| ||||||   || ||||||||||||   ||||||||||| ||||||||| ||||    
T  33294037 tttttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacagaggatgacgtggc 33294108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 36901237 - 36901179
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||| |||||||| |||||    
T  36901237 aggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttgtttttagtctctgta 36901179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 359375 - 359318
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctg 102  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||| ||||| |||||||    
T  359375 aaggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctg 359318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 7272899 - 7272957
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||| ||||| ||||  |||||||| |||  |||||||||||||||||||||    
T  7272899 aggcttaaataagtaaaaggtctctgtaagttggcgcatttttggttttagtccctgta 7272957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 61038 - 60997
Alignment:
Q  174 tgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    |||||||||||| | ||||||||||||||||||||| |||||    
T  61038 tgttacaaaaacatatatgtggcaaacggaggatgatatggc 60997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 7274712 - 7274651
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||| | ||| ||||| ||||||||||||  ||||| |||||||| ||||||||    
T  7274712 aaggcttaaataagaaaaaggtccctgtaagttcgcgcattttttgttttagttcctgtatc 7274651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 21142480 - 21142536
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||| ||||| ||||||||||||  ||||| ||||| |||| ||||    
T  21142480 gcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccttgta 21142536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 50 - 281
Target Start/End: Complemental strand, 22309194 - 22308963
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttg 149  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  22309194 ttaaatatgtaaatggtccctgtaagttcgcgtgtttttggttttagtccctgtatctttttttattctaaaacaacccctgtaagttataagcattttg 22309095  T
Q  150 gttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgtagca 249  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  22309094 gttttagtccgtgccgtcataatcagttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggcagatgtcgctgatgtatca 22308995  T
Q  250 ttccatatgctgagtcacaaatttagagggac 281  Q
    |||||| ||||||||| |||||||||||||||    
T  22308994 ttccatttgctgagtcgcaaatttagagggac 22308963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 46 - 270
Target Start/End: Original strand, 22307670 - 22307894
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||        |||||||||||||| ||||||||||||||||    
T  22307670 aggcttaaatatgcaaaaggtccctgtaagttcgcatgtttttggttttagtccctgtatcgttttttgttctaaaacaacccttgtaagttataagcat 22307769  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||| | ||  | |||||||    
T  22307770 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacagaggatgacttaacgacgtgtgacgtggcaaataacactgatgt 22307869  T
Q  246 agcattccatatgctgagtcacaaa 270  Q
      | ||| |||||||||||||||||    
T  22307870 gtcgttctatatgctgagtcacaaa 22307894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 47 - 281
Target Start/End: Original strand, 24919052 - 24919282
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| || | |||||||| ||||||||||||| || || ||||||||        ||||||||||||||||||||||||||| |  |    
T  24919052 ggcttaaatatgtaaatcgtacctgtaagtttgcgtgtttttggtcttcgttcctgtatctttttttgttctaaaacaacccctgtaagttataaacgct 24919151  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgta 246  Q
    |||||      | |||||||||| |||||||||||||| | |||||||||||||  | |||||||||||||||||||||||||||||   |||||||||     
T  24919152 ttggtcc----ctctgccgtcatcatctgttacaaaaatggctatgtggcaaacaaatgatgacatggcgacgtgtgacgtggtagacaacgctgatgtg 24919247  T
Q  247 gcattccatatgctgagtcacaaatttagagggac 281  Q
     | ||||||||||||||||||||| || |||||||    
T  24919248 tcgttccatatgctgagtcacaaagttggagggac 24919282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 277
Target Start/End: Complemental strand, 9563369 - 9563164
Alignment:
Q  72 taagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataa 171  Q
    ||||||||||| ||||| ||||| |||||||||||        |||| |||||||||||| |||||||||   |||||||||| || | | ||||||| |    
T  9563369 taagttcgcgtattttttgttttcgtccctgtatctttttttgttcttaaacaacccctgaaagttataaatgttttggttttggttcatcccgtcatca 9563270  T
Q  172 tctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgtagcattccatatgctgagtcacaaat 271  Q
    ||| ||||||||| |||||||||  ||||| |||||| | |||| | ||||||||||| |||||  | ||||||| ||||||||||||||||||| |||     
T  9563269 tcttttacaaaaatgtctatgtgaaaaacgaaggatggcgtggcaatgtgtgacgtggcagatgatgttgatgtatcattccatatgctgagtcaaaaag 9563170  T
Q  272 ttagag 277  Q
    ||||||    
T  9563169 ttagag 9563164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 270
Target Start/End: Complemental strand, 25351857 - 25351636
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||| ||| ||| ||||||||| |||||| |||| |||| |||| ||||||        |||||||| ||||| |||||||||||| | |    
T  25351857 aggcttaaatatgttaatcgtc-ttgtaagtttgcgtgtgtttgatttttgtccttgtatcttttttg-ttctaaaataaccc-tgtaagttataaacgt 25351761  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgt 245  Q
    ||||||||| |||||||| ||||| ||| |||||||||||| ||| ||||||||| || |||||  ||||||| |||||||||| ||| |  | ||||||    
T  25351760 tttggttttggtccctgctgtcatcatcagttacaaaaacggctacgtggcaaacagatgatgatgtggcgacatgtgacgtggaagacgatgatgatgt 25351661  T
Q  246 agcattccatatgctgagtcacaaa 270  Q
      | || ||||||||||||||||||    
T  25351660 gtcgtttcatatgctgagtcacaaa 25351636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 33607466 - 33607625
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||| ||||||||||||| ||||  ||||||||||||||||||||||||| |||| ||||||        ||||||||||| ||||||||||| ||| ||    
T  33607466 aaggtttaaatatgtaaaaggtctctgtaagttcgcgtgtttttggttttcgtccttgtatcttttttttttctaaaacaaaccctgtaagttgtaaaca 33607565  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggag 204  Q
    |||||||||||||||||  ||| |  |||||||| |||||||  ||  ||||||||||||    
T  33607566 ttttggttttagtccctaacgttaacatctgttagaaaaacgcttagctggcaaacggag 33607625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 42889871 - 42889690
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||| ||||| |||| ||||||        ||||||||||  || |||||||||||| ||    
T  42889871 aaggcttaaatatgtaaatcgtccctgtaagttcacgtgttttttgttttcgtccttgtatctttttttgttctaaaacagaccatgtaagttataaaca 42889772  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgt 227  Q
    ||||| |||| ||||||||||||| | |||||||||||||||  |||||| |  |||   | ||||||||||| |||||||||    
T  42889771 ttttgcttttggtccctgccgtca-actctgttacaaaaacgcttatgtgtctgacgacagctgacatggcgatgtgtgacgt 42889690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 42977196 - 42977337
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||| |||||||||||        |||||||||||||| | |||||||  | |     
T  42977196 aaggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccatttaagttaataact 42977295  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||| |||| |||||| |||||| | |||||||||||||||    
T  42977296 ttttgcttttcgtccctcccgtcaaactctgttacaaaaacg 42977337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 214
Target Start/End: Original strand, 44251603 - 44251772
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| |||| ||||||        |||||||||||||| |||||||||  | |     
T  44251603 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttttgttctaaaacaacccttgtaagttaataact 44251702  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatgg 214  Q
    ||||| |||| |||||| ||||||   || ||||||||||||   ||||||||||| |||||||||||||    
T  44251703 ttttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacagaggatgacatgg 44251772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 48713523 - 48713382
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        ||||||||||||||||||||||||  | |     
T  48713523 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctgtaagttaataacc 48713424  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||| |||| |||||| | |||| | |||||||||||||||    
T  48713423 ttttgcttttcgtccctccagtcaaactctgttacaaaaacg 48713382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 55949013 - 55948844
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| |||||||||||        ||||||||||||||||||||||||  | | |    
T  55949013 aggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctgtaagttaataactt 55948914  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    || | ||||  ||||| ||||||   || ||||||||||||   ||||||||||| ||||||||| ||||    
T  55948913 ttggattttcttccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacagaggatgacgtggc 55948844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 18597630 - 18597795
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||| ||||| |||| ||||| ||  ||||||||||||||| |||||||||||       |||||||||||||| | ||||||||  | |     
T  18597630 aaggcttaaatatttaaatcgtccatgtaatttgccgtgtttttggttttcgtccctgtatctttttttattctaaaacaacctccgtaagttaataact 18597729  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||||| |||| |||||| ||||||   || ||||||||||||   |||||||||||||||||||||    
T  18597730 ttttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgac 18597795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 203
Target Start/End: Original strand, 19994497 - 19994654
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        |||||||||||||||| |||||||  | | |    
T  19994497 aggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataactt 19994596  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacgga 203  Q
    |||| |||| |||||| ||||||   || ||||||||||||   ||||||||||||||    
T  19994597 tttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacgga 19994654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 19996114 - 19995945
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        ||||||||||||||||||||||||  | | |    
T  19996114 aggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttggtccctgtatctttttttgttctaaaacaacccctgtaagttaataactt 19996015  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    |||| |||| |||||| || |||   || ||||||||||||   |||||||||| ||| |||||| ||||    
T  19996014 tttgattttcgtccctcccatcaacttccgttacaaaaacgcacatgtggcaaatggatgatgacgtggc 19995945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 42978980 - 42978839
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||| |||||||||||        ||||||||||| || |||||||||  |       
T  42978980 aaggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaatccttgtaagttaataatt 42978881  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||| |||| |||||| |||||| | |||||||||||||||    
T  42978880 ttttgcttttcgtccctcccgtcaaactctgttacaaaaacg 42978839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 32082692 - 32082553
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        |||||||| |||||||||||||||  | | ||    
T  32082692 ggcttaaatatgtaaatcgtccgtgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaataacccctgtaagttaataacttt 32082593  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||| |||| |||||| | |||| | |||||||||||||||    
T  32082592 ttgcttttcgtccctcctgtcaaactctgttacaaaaacg 32082553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 225
Target Start/End: Original strand, 9561854 - 9562023
Alignment:
Q  55 tatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttggtttt 154  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||| |||||||         |||||||||||| |||||||||||||   ||||||| ||    
T  9561854 tatgtaaatcgtccctgtaagttcgcgtgtttttggttttcgtctctgtatcttttttttatctaaaacaacctctgtaagttataaatgttttggtatt 9561953  T
Q  155 agtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgac 225  Q
      ||||| |||| ||||||||||| |||||||  |||||| ||||||   ||||||||||| || ||||||    
T  9561954 gatcccttccgttataatctgtta-aaaaacgcatatgtgacaaacgacagatgacatggcaacatgtgac 9562023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 44253252 - 44253090
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| | ||| || |||||||||||||||| |||||| ||||        |||||||||||||||| |||||||  | | |    
T  44253252 aggcttaaatatgtaaatcgtccctttaatttggcgtgtttttggttttcgtccctatatctttttttgttctaaaacaacccctataagttaataactt 44253153  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatg 208  Q
    |||| |||| ||| || ||||||   || ||||||||||||   |||||||||||||||||||    
T  44253152 tttgattttcgtctctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatg 44253090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 55906703 - 55906606
Alignment:
Q  118 taaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||||||||| |||||||| || || ||||||||||  ||| | ||||||| |||| |||||||||||||||| ||| ||||||| |||||||||||    
T  55906703 taaaacaacccttgtaagttgtatgcgttttggttttgatccataccgtcatcatctattacaaaaacgtctatatggtaaacggatgatgacatggc 55906606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 10337106 - 10337239
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    ||||||||||||||| |||| ||||| || |||||||||||||||| |||| ||||||        ||||||||||||||||||||||||  | | ||||    
T  10337106 cttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttttgttctaaaacaacccctgtaagttaataacctttt 10337205  T
Q  149 ggttttagtccctgccgtcataatctgttacaaa 182  Q
    | ||||  ||||| |||||| | |||||||||||    
T  10337206 gcttttcatccctcccgtcaaactctgttacaaa 10337239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 54536758 - 54536577
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnna-ttctaaaacaacccctgtaagttataagc 143  Q
    |||| |||||||||||||| |||| ||||| |||||||||| |||||||| |||| ||||||         ||||||||||  || ||||| |||||| |    
T  54536758 aaggtttaaatatgtaaatcgtccctgtaaattcgcgtgttcttggtttttgtccatgtatcttttttttgttctaaaacagaccatgtaaattataaac 54536659  T
Q  144 attttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgac 225  Q
     ||||| |||| |||||||| ||||  ||||||||||||||||| |||||| | |||||  | |||| |||| |||||||||    
T  54536658 gttttgcttttggtccctgctgtcaccatctgttacaaaaacgtttatgtgtctaacggcagctgacgtggcaacgtgtgac 54536577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 33609402 - 33609287
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc--nnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||          ||||||||||| ||||||||||| | | |||    
T  33609402 gcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccttgtatcttttttttctttctaaaacaaaccctgtaagttgtgaacat 33609303  T
Q  146 tttggttttagtccct 161  Q
    |||||||||| |||||    
T  33609302 tttggttttaatccct 33609287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 54123605 - 54123465
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| ||||| || || ||||||||||||| ||||||||||         |||||||||||| |||||||||||  | | |    
T  54123605 aggcttaaatatgtaaatcgtccctgtaatttggcatgtttttggttttcgtccctgtatatttttttgttctaaaacaactcctgtaagttaataactt 54123506  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    |||| |||| |||||| |||||| | ||||| |||||||||    
T  54123505 tttgcttttcgtccctcccgtcaaactctgtaacaaaaacg 54123465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 21354838 - 21354723
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagtt-cgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagc 143  Q
    |||||||||||||||||| | ||| |||||||| |||||||||||| |||| |||||||||||        ||||||||||| ||||||||||| | | |    
T  21354838 aaggcttaaatatgtaaaagatccctgtaagtttcgcgtgtttttgattttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttgttaac 21354739  T
Q  144 attttggttttagtcc 159  Q
     |||||||||||||||    
T  21354738 tttttggttttagtcc 21354723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 25350565 - 25350728
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatgg 214  Q
    ||||||||||| ||||| |||||||||   |||||| ||  |||| ||||||||| ||||||||| |||| |||||||||||||||  |||||||  |||    
T  25350565 ttctaaaacaaaccctggaagttataaatgttttgggttg-gtccatgccgtcatcatctgttac-aaaatgtctatgtggcaaacataggatgatgtgg 25350662  T
Q  215 cgacgtgtgacgtggtagatgtcgctgatgtagcattccatatgctgagtcacaaatttagagggac 281  Q
    | || |||||||||| ||| | |||||||||  | || |||||| ||||||| |||||| |||||||    
T  25350663 c-acatgtgacgtggcagacgacgctgatgtgtcgttacatatgttgagtcataaatttggagggac 25350728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 54534981 - 54535034
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgt 103  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||    
T  54534981 ttaaatatgtaaatcgtccatgtaagttcgcgtgtttttggttttcgtccctgt 54535034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 18597915 - 18597855
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| ||||||||||    
T  18597915 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtat 18597855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 4906127 - 4906186
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||||    
T  4906127 aaggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 4906186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 10338231 - 10338088
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc--nnnnnnnattctaaaacaacccctgtaagttataag 142  Q
    |||| |||||||||||||| |||| ||||| || |||||||||||||||| ||| |||||||          || |||||||||||||||||||||  |     
T  10338231 aaggtttaaatatgtaaatcgtccatgtaattttgcgtgtttttggtttttgtctctgtatctttttttttgttttaaaacaacccctgtaagttaataa 10338132  T
Q  143 cattttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    | ||||| |||| |||||| |||||| | |||||||||||||||    
T  10338131 ctttttgcttttcgtccctcccgtcaaactctgttacaaaaacg 10338088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 38157018 - 38157077
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||| ||||||||||||||  ||| ||||||||||||||||||||||||| |||||||||    
T  38157018 aaggtttaaatatgtaaatcatccctgtaagttcgcgtgtttttggttttcgtccctgta 38157077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 4931998 - 4932055
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||||    
T  4931998 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 4932055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 4933392 - 4933335
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctg 102  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||    
T  4933392 aaggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctg 4933335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 22308845 - 22308808
Alignment:
Q  398 agaaacccataaatttatcaacaaacatcaacatcact 435  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22308845 agaaacccataaatttatcaacaaacatcaacatcact 22308808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 29756270 - 29756327
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctg 102  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||    
T  29756270 aaggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctg 29756327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 48711860 - 48711997
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt-ataagcattt 147  Q
    ||||||||||||||| |||||||||| || |||||||||| ||||| |||| ||||||        |||||||| |||||||| ||||| |||| |||||    
T  48711860 cttaaatatgtaaatcgtccttgtaattttgcgtgttttttgttttcgtccttgtatctttttttgttctaaaataacccctgcaagttgataa-cattt 48711958  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    || |||| |||| | |||||| | || ||||||||||||    
T  48711959 tgattttcgtccttcccgtcaaactcggttacaaaaacg 48711997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 2671540 - 2671600
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||| | ||| ||||| ||||||||||||  |||||||||||||||||||||||    
T  2671540 aggcttaaataagaaaaaggtccctgtaagttcgcgcatttttggttttagtccctgtatc 2671600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 4907520 - 4907465
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctg 102  Q
    |||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||    
T  4907520 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctg 4907465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 29757668 - 29757610
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| ||||||||| ||  ||||||||||| |||||||||    
T  29757668 aggcttaaatatgtaaaaggtccctgtaagttcacgcatttttggttttcgtccctgta 29757610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 53355168 - 53355262
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatga 209  Q
    ||||||||||||||||||||||||  | | ||||| |||| |||||| ||||||    | ||||||||||||   ||||||||||||||||||||    
T  53355168 ttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtcaactgccgttacaaaaacgcacatgtggcaaacggaggatga 53355262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 55019417 - 55019359
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||||||||||||||| ||||||  ||||| |||||  ||||||||    
T  55019417 aggcttaaatatgtaaatggtccttgtaatttcgcgcattttttgttttcttccctgta 55019359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 23702398 - 23702451
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccct 101  Q
    ||||||||||||||| ||||||||||||||||||  ||||| ||||| ||||||    
T  23702398 gcttaaatatgtaaaaggtccttgtaagttcgcgcattttttgttttcgtccct 23702451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 11148349 - 11148401
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtc 98  Q
    ||||||||||| ||||| ||||| |||||||| ||| ||||||||||||||||    
T  11148349 aggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtc 11148401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 34538125 - 34538185
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||||||||| |||||  ||||||| ||  ||||||||||||||||| ||||||    
T  34538125 aggcttaaatatgtaaaaggtcccggtaagttagcacgtttttggttttagtccttgtatc 34538185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 35785166 - 35785222
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||| | ||| ||||||||||||| ||||| ||||| |||||||||    
T  35785166 gcttaaatatgtaaaagatccatgtaagttcgcgtattttttgtttttgtccctgta 35785222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 55947359 - 55947419
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||||||||| |||| ||||| ||  ||| ||||||||||| |||||||||||    
T  55947359 aggcttaaatatgtaaatcgtccctgtaatttgacgtatttttggttttcgtccctgtatc 55947419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 35786737 - 35786682
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||| ||||| ||||||||||||  ||||||||||| |||| ||||    
T  35786737 cttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccttgta 35786682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 54121895 - 54121966
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||||||||||||||||||||||  | | ||||| |||| |||||| |||| | | |||||||||||||||    
T  54121895 ttctaaaacaacccctgtaagttaataactttttgcttttcgtccctcccgttaaactctgttacaaaaacg 54121966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 4284445 - 4284391
Alignment:
Q  52 aaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||| |||| ||||||||| || ||||||| |||||||||||| ||||    
T  4284445 aaatatgtaaaaggtctttgtaagttggcctgttttttgttttagtccctatatc 4284391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 23703923 - 23703865
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| | ||||||||||  |||||||||||  ||||||||    
T  23703923 aggcttaaatatgtaaaaggtccctctaagttcgcgcatttttggttttcatccctgta 23703865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 55017743 - 55017781
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgttttt 88  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  55017743 ttaaatatgtaaatcgtccctgtaagttcgcgtgttttt 55017781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 4241720 - 4241671
Alignment:
Q  52 aaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccct 101  Q
    ||||||||||| |||| | ||||||| |||||||||| ||||||||||||    
T  4241720 aaatatgtaaaaggtcttcgtaagttggcgtgttttttgttttagtccct 4241671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 34539858 - 34539798
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||| ||||| ||||| |||||||| ||| ||||||||||||| || |||||||    
T  34539858 aaggcttaaataagtaaa-ggtccatgtaagttagcgcgtttttggttttaatctctgtatc 34539798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 39665274 - 39665318
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    ||||||||||||||||||| ||||||||||||  ||||| |||||    
T  39665274 ttaaatatgtaaatggtccctgtaagttcgcgcattttttgtttt 39665318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 39929415 - 39929371
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttg 89  Q
    ||||||||||||||||||  |||| ||||| ||||||||||||||    
T  39929415 aaggcttaaatatgtaaaacgtccatgtaatttcgcgtgtttttg 39929371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 42888356 - 42888425
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||||||||  ||| ||||||||||||| ||  | |||| |||||| ||||||| ||||||||||||||||    
T  42888356 ttctaaaacagaccccgtaagttataagcctt--gcttttggtccctaccgtcatcatctgttacaaaaacg 42888425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 13420346 - 13420111
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  13420346 aggcttaaatatgtaaatggcccctgtaagtttgcgtgtttttggttttagtccctgtatctttttttgttctaaaacaacccctgtaagttataagcat 13420247  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgt 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||    
T  13420246 tttggttttagtccctgccgtcataatccgttacaaaaacgtctatgtggcaaacggatgatgacatggcgacgtgtgatgtggcagatgacgctgatgt 13420147  T
Q  246 agcattccatatgctgagtcacaaatttagagggac 281  Q
      ||||||||||||||||||||||| ||||||||||    
T  13420146 gtcattccatatgctgagtcacaaaattagagggac 13420111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 47 - 281
Target Start/End: Original strand, 37348735 - 37348969
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||| ||||        ||||||||||| || |||||||||||| | ||    
T  37348735 ggcttaaatttgtaaatggtccccgtaagttcgcgtgtttttggttttagtccctatatcattttttgttctaaaacaatccttgtaagttataaacgtt 37348834  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgta 246  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||     
T  37348835 ttggttttagtccatgccgtcattatctgttacaaaaatgtctatgtggaaaacggaggatgacatggcgacgtgtgacgtggcagatgacgttgatgtg 37348934  T
Q  247 gcattccatatgctgagtcacaaatttagagggac 281  Q
     ||||||||||||||||||||||| ||||||||||    
T  37348935 tcattccatatgctgagtcacaaaattagagggac 37348969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 50 - 270
Target Start/End: Complemental strand, 37350260 - 37350037
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnatt---ctaaaacaacccctgtaagttataagcatt 146  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| || ||||||        ||   |||||||||||||| |||||||||||||||    
T  37350260 ttaaatatgtaaatggtccccgtaagttcgcgtgtttttggttttagcccatgtatcttttttttttgttctaaaacaacccctataagttataagcatt 37350161  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgta 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||  |||||| ||     
T  37350160 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacttgacgacgtgtgacgtggcagataacgctgacgtg 37350061  T
Q  247 gcattccatatgctgagtcacaaa 270  Q
     | ||| | |||||||||||||||    
T  37350060 tcgttctacatgctgagtcacaaa 37350037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 12180699 - 12180558
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||| |||||||| ||| |||| ||||||||||||||||||||||||| |||||||||||        ||||||||||| |||||||||||| || | |    
T  12180699 aggctaaaatatgttaattgtccctgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttacaaacgt 12180600  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgt 187  Q
    |||| |||| |||||| ||||||  |||||||||||||||||    
T  12180599 tttgattttcgtccctcccgtcagcatctgttacaaaaacgt 12180558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 21017772 - 21017606
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatgg 214  Q
    ||||||||||||||||||||||||||| |||||||||||| |||  ||  || || |  ||||||||||||||| ||||||||||  ||||||||| | |    
T  21017772 ttctaaaacaacccctgtaagttataaacattttggttttggtctttgatgttatcagttgttacaaaaacgtccatgtggcaaatagaggatgacgtcg 21017673  T
Q  215 cgacgtgtgacgtggtagatgtcgctgatgtagcattccatatgctgagtcacaaatttagagggac 281  Q
     || ||||||| ||| |||   || ||||||  | ||||||||||||||||||||| ||||||||||    
T  21017672 tgatgtgtgacatggcagacaacgttgatgtgtcgttccatatgctgagtcacaaagttagagggac 21017606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 46245122 - 46245261
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||        ||||||||||||||||||||||||  | | ||    
T  46245122 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctgtaagttaataacttt 46245221  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||| |||| |||||| ||||||   || ||||||||||||    
T  46245222 ttgattttcgtccctcccgtcaacttccgttacaaaaacg 46245261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 8231692 - 8231530
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattt 147  Q
    |||||||||||||||| |||| ||||| || || ||||||||||||| |||||||||||        ||||||||||||||||||||||||  | | |||    
T  8231692 gcttaaatatgtaaatcgtccctgtaatttggcttgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataactttt 8231593  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    || |||| ||| || ||||||   || ||||||||||||   |||||||||||||||||||||    
T  8231592 tgattttcgtcactcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgac 8231530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 31392055 - 31392221
Alignment:
Q  44 gaaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagc 143  Q
    |||||||||||||||||||| |||| ||||| ||  ||||||||||||||| |||||||||||        |||||||||||||||| |||||||  | |    
T  31392055 gaaggcttaaatatgtaaatcgtccctgtaatttgacgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataac 31392154  T
Q  144 attttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
     ||||| |||| |||||| ||| ||   || ||||||||||||   |||||||||||||||||||||    
T  31392155 tttttgattttcgtccctcccgccaacttccgttacaaaaacgcacatgtggcaaacggaggatgac 31392221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 45276408 - 45276577
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||||||||||||||| || ||||| |||| || ||| |||||||||||| |||||||||||        ||||||||||||||||||||||||  | |     
T  45276408 aaggcttaaatatgtagatcgtcct-gtaatttggcgagtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataact 45276506  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||| |||| |||||| ||||||   || ||||||||||||   ||||||||||||||||||||| ||||    
T  45276507 ttttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgacgtggc 45276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 21716679 - 21716510
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| || | ||||| || |||||||||||||||| |||||||||||        || |||||||| ||||||||||||  | | |    
T  21716679 aggcttaaatatgtaaatcgttcctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttttaaaacaatccctgtaagttaataactt 21716580  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    |||| |||| |||||| ||||||   || ||||||||||||   ||||||||||||||||||||| ||||    
T  21716579 tttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgacgtggc 21716510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 12178481 - 12178597
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||        ||||||||||| | ||||||||| | | |     
T  12178481 aaggcttaaatatgtaaaaggtccctctaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaactctgtaagttgttaact 12178580  T
Q  145 ttttggttttagtccct 161  Q
    |||||||||||||||||    
T  12178581 ttttggttttagtccct 12178597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 31393720 - 31393552
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| |||| ||||||        || |||||||||||||||||||||  | |     
T  31393720 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttttgttataaaacaacccctgtaagttaataact 31393621  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatg 213  Q
    ||||  |||| |||||| ||||||   || ||||||||||||   ||||||||||| ||||||||||||    
T  31393620 ttttaattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacagaggatgacatg 31393552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 45278026 - 45277863
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        || ||||||||||||| |||||||  | | ||    
T  45278026 ggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttttaaaacaacccctataagttaataacttt 45277927  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||| |||| |||||| ||||||   || ||||||||||||   |||||||||||||| ||||||    
T  45277926 ttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggacgatgac 45277863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 46246635 - 46246544
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt 137  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||        ||||||||||| |||||||||||    
T  46246635 aggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 46246544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 8230068 - 8230233
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || | |||||||||||||| |||||||||||        |||||||||||||||| |||||||  | |     
T  8230068 aaggcttaaatatgtaaatcgtccctgtaatttggtgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataact 8230167  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||||  |||| ||||||  |||||   || ||||||||||||   |||||||||||||||||||||    
T  8230168 tttttattttcgtccctctcgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgac 8230233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 37133709 - 37133601
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||| ||| |||||||        ||||||||||||||| | ||||||||| | |    
T  37133709 aggcttaaatatgtaaatcgtccccgtaagttcgcgtgtttttggttttcgtcactgtatctttttttgttctaaaacaacccccggaagttataaacgt 37133610  T
Q  146 tttggtttt 154  Q
    |||||||||    
T  37133609 tttggtttt 37133601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 40028455 - 40028625
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||| |||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        |||||||||||||||| |||||||  | |     
T  40028455 aaggtttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataact 40028554  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||  |||| |||||| ||||||   || ||||||||||||   ||||||||||| || |||||| ||||    
T  40028555 tttttattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacagaagatgacgtggc 40028625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 21715071 - 21715235
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| ||||| || ||||||||||| |||| |||||||||||        || |||||||| |||| |||||||  | | |    
T  21715071 aggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttgattttcgtccctgtatctttttttgttttaaaacaatccctataagttaataactt 21715170  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    |||| |||| |||||| ||||||   || ||||||||||||   |||||||||||||| ||||||    
T  21715171 tttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggacgatgac 21715235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 37131836 - 37131956
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattt 147  Q
    |||||||||||||||| ||||  |||||||||||||| ||||||||| || ||||||||        |||||||| ||| | |||||||||||| | |||    
T  37131836 gcttaaatatgtaaatcgtccacgtaagttcgcgtgtgtttggttttcgttcctgtatctttttttgttctaaaataactcatgtaagttataaacgttt 37131935  T
Q  148 tggttttagtccctgccgtca 168  Q
    ||||||| |||||| ||||||    
T  37131936 tggttttcgtcccttccgtca 37131956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 41384147 - 41384206
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||| |||||||||    
T  41384147 aaggcttaaatatgtaaatggtccttgtaagttcgcgcattttttgttttggtccctgta 41384206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 706742 - 706800
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||    
T  706742 aggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttggttttagtccctgta 706800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 11671342 - 11671208
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttg 149  Q
    |||||||||||||| ||||  |||||||||||||||||| ||||| |||| ||||||        ||||||||||| |||||||||||| ||   |||||    
T  11671342 ttaaatatgtaaatcgtccccgtaagttcgcgtgttttttgttttcgtccatgtatctatttttgttctaaaacaaaccctgtaagttacaaatgttttg 11671243  T
Q  150 gttttagtccctgccgtcataatctgttacaaaaa 184  Q
     |||| ||||||  |||||  ||||||||||||||    
T  11671242 attttcgtccctctcgtcagcatctgttacaaaaa 11671208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 31734814 - 31734766
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  31734814 aggcttaaacatgtaaatcgtccttgtaagttcgcgtgtttttggtttt 31734766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 38758377 - 38758317
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||||||    
T  38758377 aggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtccctgtatc 38758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 40030089 - 40029925
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| ||||| || |||||||||| |||||  |||||||||         ||||||||||||| || |||||||  | | |    
T  40030089 aggcttaaatatgtaaatcgtccctgtaatttggcgtgttttttgttttcatccctgtatatttttttgttctaaaacaacctctataagttagtaactt 40029990  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    |||| |||| |||||| ||||||   || ||||||||||||   |||||||||||| ||||||||    
T  40029989 tttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacgaaggatgac 40029925  T

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Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 708212 - 708154
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||| ||||    
T  708212 aggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttggttttagtccatgta 708154  T

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Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 37547933 - 37547991
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||    
T  37547933 aggcttaaataagtaaaaggtccttgtaagttggtgcgtttttggttttagtccctgta 37547991  T

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Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 41385869 - 41385811
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| ||||| |||||||||    
T  41385869 aggcttaaatatgtaaatggtccctgtaagttcgcgcattttttgttttggtccctgta 41385811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 3704396 - 3704457
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||| |||||| |||| ||||||||||| ||||||||||||| |||||| ||||    
T  3704396 aaggcttaaataggtaaatcgtccatgtaagttcgcttgtttttggttttcgtccctttatc 3704457  T

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Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 11669841 - 11669898
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||||| |||| ||||    
T  11669841 ggcttaaatatgtaaacggtccctgtaagttcgcatgtttttggttttcgtccatgta 11669898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 41593262 - 41593205
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||||||| |||||||||| |  ||||||||||| |||||||||    
T  41593262 ggcttaaatatgtaaatggtccctgtaagttcgtgcatttttggttttggtccctgta 41593205  T

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Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 32429931 - 32429872
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||| |||||  |||| |||||||| ||| ||||||||||||||||||||||    
T  32429931 aaggcttaaataagtaaaaagtccctgtaagttggcgcgtttttggttttagtccctgta 32429872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 32881119 - 32881279
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttg 149  Q
    |||||||||||||| || ||||||| || || | ||||| |||||||| | ||||||        |||||||||||||||| |||||||  | | |||||    
T  32881119 ttaaatatgtaaattgttcttgtaatttggcatattttttgttttagttcatgtatctttttttgttctaaaacaacccctataagttaataactttttg 32881218  T
Q  150 gttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
     |||| |||||| || |||   || ||||||||||||   |||||||||||||||||||||    
T  32881219 attttcgtccctcccatcaacttccgttacaaaaacgcacatgtggcaaacggaggatgac 32881279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 38756655 - 38756714
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||  ||| ||||| |||||||| ||| ||||||||||||||||||||||||    
T  38756655 ggcttaaatattaaaaaggtccctgtaagttagcgcgtttttggttttagtccctgtatc 38756714  T

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Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 27160304 - 27160362
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||| ||||| |||||||||||||||| | | |||||||||| |||||||||    
T  27160304 aggcttaaataagtaaaaggtccttgtaagttcgtgagattttggttttcgtccctgta 27160362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 27162055 - 27161997
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| |||||||||||| | |||||||||| |||| ||||    
T  27162055 aggcttaaatatgtaaaaggtccctgtaagttcgcgagattttggttttcgtccttgta 27161997  T

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Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 435
Target Start/End: Original strand, 37349089 - 37349123
Alignment:
Q  401 aacccataaatttatcaacaaacatcaacatcact 435  Q
    |||||||||||||||||||||||||||||||||||    
T  37349089 aacccataaatttatcaacaaacatcaacatcact 37349123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 14774515 - 14774651
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    ||||||||||||||| ||||  |||||||||| ||||||| ||||| |||| ||||||        ||||||||||||||||| ||||||  | | ||||    
T  14774515 cttaaatatgtaaattgtccccgtaagttcgcatgttttttgttttcgtccgtgtatcatttttg-ttctaaaacaacccctgcaagttaataacttttt 14774613  T
Q  149 ggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    | |||| |||||| ||||||   || ||||||||||||    
T  14774614 gattttcgtccctcccgtcaacttccgttacaaaaacg 14774651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 15224968 - 15225104
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    ||||||||||||||| ||||  |||||||||| ||||||| ||||| |||| ||||||        ||||||||||||||||| ||||||  | | ||||    
T  15224968 cttaaatatgtaaattgtccccgtaagttcgcatgttttttgttttcgtccgtgtatcatttttg-ttctaaaacaacccctgcaagttaataacttttt 15225066  T
Q  149 ggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    | |||| |||||| ||||||   || ||||||||||||    
T  15225067 gattttcgtccctcccgtcaacttccgttacaaaaacg 15225104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 20208523 - 20208464
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||||||| | ||| |||||||| | ||||||||| ||||||||||| ||||    
T  20208523 ggcttaaatatgtaaaagatccctgtaagttggtgtgtttttgcttttagtccctctatc 20208464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 30792821 - 30792750
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||||||||||||||||||||||  | | ||||| |||| |||||| |||||| | | |||||||||||||    
T  30792821 ttctaaaacaacccctgtaagttaataactttttgcttttcgtccctcccgtcaaactttgttacaaaaacg 30792750  T

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Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 41591513 - 41591572
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||| ||||||  ||||| ||||| |||||||||    
T  41591513 aaggcttaaatatgtaaaaggtccctgtaatttcgcgcattttttgttttcgtccctgta 41591572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 15136999 - 15136946
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtcc 99  Q
    |||||||||||| ||||| |||| ||||| |||||||||||||| |||| ||||    
T  15136999 aggcttaaatatataaatcgtccctgtaaattcgcgtgtttttgattttcgtcc 15136946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 28556246 - 28556303
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||| |||   ||||| || |||||||||||||||||||| |||||    
T  28556246 ggcttaaatatgtaaaaggtatctgtaatttagcgtgtttttggttttagtctctgta 28556303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 32882775 - 32882606
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || || ||||||||||||| |||| |||||         |||||||||||||| | |||||||    |     
T  32882775 aaggcttaaatatgtaaatcgtccctgtaa-tttgcatgtttttggtttttgtccatgtatattcttttgttctaaaacaacccttataagttaatgact 32882677  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||| |||| |||||| ||||||   || ||||||||||||   |||||||||||  |||||||| ||||    
T  32882676 ttttgattttcgtcccttccgtcaacttccgttacaaaaacgcacatgtggcaaacataggatgacgtggc 32882606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 25008090 - 25008134
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttg 89  Q
    ||||||||||||||||||  |||| ||||| ||||||||||||||    
T  25008090 aaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttg 25008134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 52)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 35973265 - 35973099
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatgg 214  Q
    |||||||| ||| || ||||||||||| | |||||||||| |||  ||||||||  ||||||||||||||||||||||||||||||||||| |||| |||    
T  35973265 ttctaaaataactcccgtaagttataaacgttttggttttggtcattgccgtcaccatctgttacaaaaacgtctatgtggcaaacggaggctgacgtgg 35973166  T
Q  215 cgacgtgtgacgtggtagatgtcgctgatgtagcattccatatgctgagtcacaaatttagagggac 281  Q
    | ||||||||||||| ||| | || ||||||  | ||||||| || |||||||||| || |||||||    
T  35973165 caacgtgtgacgtggcagacgacgttgatgtgtcgttccataagccgagtcacaaagttggagggac 35973099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 47 - 229
Target Start/End: Complemental strand, 7185915 - 7185733
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    |||||||||||| |||| ||||||||||||| || ||||||| ||||| |||||||||||       |||||||||||  ||||||||||||||| ||||    
T  7185915 ggcttaaatatgcaaatcgtccttgtaagtttgcatgttttttgttttcgtccctgtatctttttttattctaaaacagaccctgtaagttataaacatt 7185816  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtgg 229  Q
    ||| |||| |||||| ||||||  |||||||||||||||   |||||| |  ||||  | ||||||||||| |||||||||||    
T  7185815 ttgcttttggtcccttccgtcagcatctgttacaaaaacacttatgtgtctgacggcagctgacatggcgatgtgtgacgtgg 7185733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 267
Target Start/End: Original strand, 18309083 - 18309305
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||| ||||||| |||| | ||| |||  ||| ||||| |||| |||||||||||        ||||||||||| || |||||||||||| |     
T  18309083 aaggcttaaatttgtaaatcgtccctctaaattcttgtgattttgattttcgtccctgtatctttttttgttctaaaacaatccttgtaagttataaacg 18309182  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatg 244  Q
    |||||||||| || |||| ||||||  ||| |||||||||||| |||||| |||||  || ||||||| ||||||| ||| |||| ||||| ||||||||    
T  18309183 ttttggttttggttcctgtcgtcatcgtctattacaaaaacgtatatgtgacaaacaaagaatgacatagcgacgtatgatgtggcagatgacgctgatg 18309282  T
Q  245 tagcattccatatgctgagtcac 267  Q
    |  | |||||||||| |||||||    
T  18309283 tgtcgttccatatgccgagtcac 18309305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 50317111 - 50316970
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||| |||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||        ||||||||||| |||||||||||| || |     
T  50317111 aaggtttaaatatgtaaatcgtccatgtaagttcgcgtgtttttgattttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttacaaacg 50317012  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||| |||| |||||| ||||||  ||||||||||||||||    
T  50317011 ttttgattttcgtccctcccgtcagcatctgttacaaaaacg 50316970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 16673317 - 16673152
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        |||||||||||||||| |||||||  | |     
T  16673317 aaggcttaaatatgtaaatcgtccctgtaattttgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataact 16673218  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||||| |||| |||||| ||||||   || ||||||||||||   ||||||||||| |||||||||    
T  16673217 ttttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacagaggatgac 16673152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 28920715 - 28920552
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||| | |||| ||||| || |||||||||| ||||| |||||||||||        ||||||||||||||||||||||||  | | |    
T  28920715 aggcttaaatatgtaagtcgtccctgtaatttggcgtgttttttgtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataacct 28920616  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatga 209  Q
    |||| |||| |||||| ||||||   || ||||||||||||   ||||||||||||||||||||    
T  28920615 tttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatga 28920552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 33257879 - 33258048
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| |||| ||||||        ||||||||||| ||||||||||||  | |     
T  33257879 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggtttttgtccttgtatctttttttgttctaaaacaa-ccctgtaagttaataact 33257977  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||| |||| |||||| ||||||   || ||||||||||||   ||||||||||||||||||||| ||||    
T  33257978 ttttgattttcgtccctcccgtcaacttccgttacaaaaacgcaaatgtggcaaacggaggatgacgtggc 33258048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 33278051 - 33278220
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| |||| ||||||        ||||||||||| ||||||||||||  | |     
T  33278051 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggtttttgtccttgtatctttttttgttctaaaacaa-ccctgtaagttaataact 33278149  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||| |||| |||||| ||||||   || ||||||||||||   ||||||||||||||||||||| ||||    
T  33278150 ttttgattttcgtccctcccgtcaacttccgttacaaaaacgcaaatgtggcaaacggaggatgacgtggc 33278220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 7655324 - 7655155
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| || | ||||| || |||||||||||||||| |||||||||||        ||||||||||||||||||||||||  | | |    
T  7655324 aggcttaaatatgtaaatcgttcctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctgtaagttaataactt 7655225  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    |||| |||| |||||| ||||||   ||  |||||||||||   ||||||||||| ||||||||| ||||    
T  7655224 tttgattttcgtccctcccgtcaacttccattacaaaaacgcacatgtggcaaacagaggatgacgtggc 7655155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 13211168 - 13211032
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttg 149  Q
    ||||||||||||||  ||| |||||||| | |||||||||||||| |||||||||||        ||||||||||  |||||||||||||||   |||||    
T  13211168 ttaaatatgtaaatcttccctgtaagtttgtgtgtttttggttttcgtccctgtatctctttttgttctaaaacagaccctgtaagttataaatgttttg 13211069  T
Q  150 gttttagtccctgccgtcataatctgttacaaaaacg 186  Q
     ||||| ||||||||||||| ||| ||||||||||||    
T  13211068 cttttattccctgccgtcatcatccgttacaaaaacg 13211032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 7184322 - 7184460
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||        ||||||| ||  |||||||| |||||||| |    
T  7184322 aggcttaaatatgtaaattgttcttgtaagttcgcgtgtttttggttttcgtctctgtatctttttttgttctaaagcagaccctgtaaattataagcct 7184421  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaa 184  Q
    | || |||| |||||| | ||||| || |||||||||||    
T  7184422 tatgcttttggtccctacggtcatcatatgttacaaaaa 7184460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 28919081 - 28919251
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||| ||||| |||| ||||| || ||||||||||| ||||  ||||||||||        |||||||||||||||| |||||||  | |     
T  28919081 aaggcttaaatatataaattgtccctgtaatttggcgtgtttttgattttcatccctgtatctttttttgttctaaaacaacccctataagttaataact 28919180  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||| |||| |||||| ||||||   || ||||||||||||   ||||||||||||||||||||| ||||    
T  28919181 ttttgattttcgtcccttccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgacgtggc 28919251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 24439007 - 24438866
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc-nnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||| |||||||||||| |||| ||||| ||||||||||||||||||| |||||||||||         ||||||||||| |||||||||||| || | |    
T  24439007 ggctaaaatatgtaaatcgtccctgtaaattcgcgtgtttttggttttcgtccctgtatcttttttttgttctaaaacaaaccctgtaagttacaaacgt 24438908  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgt 187  Q
    |||| |||| |||||  ||||||  |||||||||||||||||    
T  24438907 tttgattttcgtcccacccgtcagcatctgttacaaaaacgt 24438866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 24437072 - 24437188
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||| |||||||        ||||||||||| |||||||| || | | |     
T  24437072 aaggcttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgttttcgtcactgtatctttttttgttctaaaacaaaccctgtaaattgttaact 24437171  T
Q  145 ttttggttttagtccct 161  Q
    |||||||||||||||||    
T  24437172 ttttggttttagtccct 24437188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 22684210 - 22684150
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  22684210 aggctttaatatgtaaaaggtccttgtaagttcgcgtgtttttggttttcgtccatgtatc 22684150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 36145343 - 36145507
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| ||||| || |||| ||||| ||||| |||||||||||        |||||||||||||||| |||||||  | | |    
T  36145343 aggcttaaatatgtaaatcgtccctgtaatttggcgtattttttgttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataactt 36145442  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    |||| |||| |||||| ||||||   ||  ||||||||| |   |||||||||||||||||||||    
T  36145443 tttgattttcgtccctcccgtcaacttccattacaaaaatgcacatgtggcaaacggaggatgac 36145507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 33259431 - 33259268
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        || ||||||||||||| |||||||  | | ||    
T  33259431 ggcttaaatatgtaaattgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttttaaaacaacccctataagttaataacttt 33259332  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||  |||| |||||| ||||||   || |||||||||| |   |||||||||||||| ||||||    
T  33259331 ttaattttcgtccctcccgtcaacttccgttacaaaaatgcacatgtggcaaacggacgatgac 33259268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 33279590 - 33279427
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        || ||||||||||||| |||||||  | | ||    
T  33279590 ggcttaaatatgtaaattgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttttaaaacaacccctataagttaataacttt 33279491  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||  |||| |||||| ||||||   || |||||||||| |   |||||||||||||| ||||||    
T  33279490 ttaattttcgtccctcccgtcaacttccgttacaaaaatgcacatgtggcaaacggacgatgac 33279427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 50315317 - 50315375
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||    
T  50315317 aggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtctctgta 50315375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 9419878 - 9419825
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtcc 99  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  9419878 aggcttaaatatgtaaaaggtccttgtaagttggcgtgtttttgcttttagtcc 9419825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 10708028 - 10708081
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtc 98  Q
    ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  10708028 aaggcttaaatatgtaaaaagtccctgtaagttcgcgtgtttttggttttagtc 10708081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 46604439 - 46604552
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||| |||| |||||         |||||| |||| ||||||||||| | | ||||    
T  46604439 ggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggttttcgtccttgtat-ttttttttttctaacacaaaccctgtaagttgtgaacatt 46604537  T
Q  147 ttggttttagtccct 161  Q
    |||||||||||||||    
T  46604538 ttggttttagtccct 46604552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 12095875 - 12095935
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    |||||||||||| ||||| ||||| |||||||||| | |||||||||||||||||||||||    
T  12095875 aaggcttaaataagtaaaaggtccctgtaagttcgtgcgtttttggttttagtccctgtat 12095935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 8323500 - 8323441
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||||    
T  8323500 aaggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 8323441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 31815831 - 31815772
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||||    
T  31815831 aaggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 31815772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 32847812 - 32847871
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||||    
T  32847812 aaggcttaaataagtaaaaggtccctgtaagttggcgcgtttttggttttagtccctgta 32847871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 7653686 - 7653849
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| ||||| || |||| ||||| ||||| |||||||||||        |||||||||| ||||| |||||||  | | ||    
T  7653686 ggcttaaatatgtaaatcgtccctgtaatttggcgtattttttgttttcgtccctgtatctttttttgttctaaaacagcccctataagttaataacttt 7653785  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||| |||| |||||| ||||||   ||  ||||||||| |   |||||||||||||||||||||    
T  7653786 ttgatttttgtccctcccgtcaacttccattacaaaaatgcacatgtggcaaacggaggatgac 7653849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 16592022 - 16592080
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||    
T  16592022 gcttaaatatgtaaattgtccctgtaatttggcgtgtttttggttttcgtccctgtatc 16592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 3894153 - 3894084
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaa 184  Q
    |||||||| ||||| ||||||| |||| ||||||| |||| |||||||| ||||| ||||||||||||||    
T  3894153 ttctaaaataacccttgtaagtaataaacattttgcttttggtccctgctgtcatcatctgttacaaaaa 3894084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 41668273 - 41668411
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||  ||||| || |||||||||||||||| ||| ||||||         ||||||||||||| ||||||||||  | | ||    
T  41668273 ggcttaaatatgtaaatcgtctctgtaatttggcgtgtttttggttttcgtctctgtatatttttttgttctaaaacaacctctgtaagttaataacttt 41668372  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaac 185  Q
    ||| |||| ||| || |||||| | ||||||||||||||    
T  41668373 ttgcttttcgtctctcccgtcaaactctgttacaaaaac 41668411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 9626469 - 9626525
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||| ||||| ||||||||||||| ||||| ||||| |||||||||    
T  9626469 gcttaaatatgtaaaaggtccctgtaagttcgcgtattttttgttttcgtccctgta 9626525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 26734425 - 26734481
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctg 102  Q
    ||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||    
T  26734425 aggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggttttcgtccctg 26734481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 31321008 - 31321068
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||  |||||  ||| ||||||||||||||||||||||||| |||||||||||    
T  31321008 aggcttaaatagttaaatcatccctgtaagttcgcgtgtttttggttttcgtccctgtatc 31321068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 33981503 - 33981563
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||||||||| |||| | |||||||| ||||||||||||||| || |||||||    
T  33981503 aggcttaaatatgtaaatcgtccctataagttcgtgtgtttttggttttattctctgtatc 33981563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 40767618 - 40767674
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||||| ||||  |||||||| ||| ||||||||||||||||||||||||    
T  40767618 ttaaatatgtaaaaggtctctgtaagtttgcgcgtttttggttttagtccctgtatc 40767674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 44268891 - 44268935
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    |||||||||||||| |||| |||||||||||||||||||||||||    
T  44268891 ttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggtttt 44268935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 11431390 - 11431331
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||| ||||| ||||| |||||||| ||| |||||| |||||||||||||||    
T  11431390 aaggcttaaataagtaaaaggtccctgtaagttggcgcgtttttcgttttagtccctgta 11431331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 12098000 - 12097941
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    ||||||||||| ||||| |||||  |||||||||||  ||||||||||||||||||||||    
T  12098000 aggcttaaataagtaaaaggtccccgtaagttcgcgcatttttggttttagtccctgtat 12097941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 19057858 - 19057763
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    |||||||||||||||| |||||||  | | ||||  |||| |||||| ||||||   |||||||||||||||   |||||||||||||||||||||    
T  19057858 ttctaaaacaacccctataagttaataacttttttattttcgtcccttccgtcaacttctgttacaaaaacgcacatgtggcaaacggaggatgac 19057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 31809987 - 31810046
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||| ||||| |||||||||    
T  31809987 aaggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgta 31810046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 8322521 - 8322578
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||| ||||| ||||||||||||  ||||| ||||| |||||||||    
T  8322521 ggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgta 8322578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 28360767 - 28360828
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||||||| || |||||||||||||| |||   ||||||||||||||| ||||||    
T  28360767 aaggcttaaatatgttaaaggtccttgtaagttggcgcacttttggttttagtccttgtatc 28360828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 31028724 - 31028676
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    |||||||||||| |||| ||||||| |||||||||||||||||| ||||    
T  31028724 aggcttaaatatataaaaggtccttataagttcgcgtgtttttgctttt 31028676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 31035694 - 31035646
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    |||||||||||| |||| ||||||| |||||||||||||||||| ||||    
T  31035694 aggcttaaatatataaaaggtccttataagttcgcgtgtttttgctttt 31035646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 10612189 - 10612142
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    |||||||||||||||| ||||||| |||||||| ||||||||| ||||    
T  10612189 ggcttaaatatgtaaaaggtccttataagttcgtgtgtttttgctttt 10612142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 13209655 - 13209722
Alignment:
Q  127 ccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtg 194  Q
    ||||||||| ||||| | ||||| |||| |||||||||||||  |||||||||||||| || ||||||    
T  13209655 ccctgtaagatataaacgttttgcttttggtccctgccgtcaccatctgttacaaaaatgtttatgtg 13209722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 13222914 - 13222973
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||| ||||| ||||| |||||||| ||  ||||||||||||||||| ||||||    
T  13222914 ggcttaaataagtaaaaggtccctgtaagttagcacgtttttggttttagtccgtgtatc 13222973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 35383117 - 35383058
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||| ||||| |||||   |||||| ||| ||||||||||||||||||||||    
T  35383117 aaggcttaaataagtaaaaggtcccgataagttggcgcgtttttggttttagtccctgta 35383058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 43882075 - 43882114
Alignment:
Q  67 ccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  43882075 ccttgtaagttcgcgcttttttggttttagtccctgtatc 43882114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 13229335 - 13229273
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtg-tttttggttttagtccctgtatc 106  Q
    |||||||||||||| ||| ||||| |||||||| ||| | |||||||||||| ||||||||||    
T  13229335 aaggcttaaatatgcaaaaggtccctgtaagttagcgcgttttttggttttaatccctgtatc 13229273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 18604628 - 18604583
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggt 91  Q
    ||||||||||||||||| | ||| |||||||||||||| |||||||    
T  18604628 aggcttaaatatgtaaaagatccctgtaagttcgcgtgcttttggt 18604583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 33755377 - 33755328
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    |||||||||||| ||||| |||||||||||||||| | | ||||||||||    
T  33755377 aaggcttaaataagtaaaaggtccttgtaagttcgtgagattttggtttt 33755328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 50 - 281
Target Start/End: Original strand, 22942339 - 22942572
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnat--tctaaaacaacccctgtaagttataagcattt 147  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||  |||||||||         |  ||||||||||||  |||||||||||| | |||    
T  22942339 ttaaatatgtaaatcgtccctgtaagttcgcttgtttttggttttcatccctgtatatttttttttgttctaaaacaacctatgtaagttataaacgttt 22942438  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctgatgtag 247  Q
    ||||||| |||||  ||||||| |||||||||||||| |||||||||||||||  |||||||| |||| | |||||| |||| ||| |    ||||||      
T  22942439 tggttttggtcccatccgtcatcatctgttacaaaaaagtctatgtggcaaacataggatgacgtggcaatgtgtgatgtggaagacgatattgatgtgt 22942538  T
Q  248 cattccatatgctgagtcacaaatttagagggac 281  Q
    |||||||||||| |||||||||| ||| ||||||    
T  22942539 cattccatatgccgagtcacaaagttaaagggac 22942572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 30700294 - 30700433
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||| |||||||||||||| |||  | ||||||||||||||||||||||| |||| ||||||        ||||||||||  ||||||||||||||| ||    
T  30700294 aaggtttaaatatgtaaatcgtctctttaagttcgcgtgtttttggttttcgtccttgtatctttttttgttctaaaacacaccctgtaagttataaaca 30700393  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaa 184  Q
    ||||| |||| |||||||||||||  ||||||||||||||    
T  30700394 ttttgcttttggtccctgccgtcagcatctgttacaaaaa 30700433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 31796893 - 31796754
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||        ||||||||||||||||||||||||  | | ||    
T  31796893 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctgtaagttaataacttt 31796794  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||| |||| |||||| ||||||   || ||||||||||||    
T  31796793 ttgattttcgtccctcccgtcaacttccgttacaaaaacg 31796754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 40499313 - 40499172
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||        ||||||||||||||| ||||||||  | |     
T  40499313 aaggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaaccccggtaagttaataact 40499214  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||| |||| |||||| ||||||   || ||||||||||||    
T  40499213 ttttgattttcgtccctcccgtcaacttccgttacaaaaacg 40499172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 41081800 - 41081892
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt 137  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||        ||||||||||| |||||||||||    
T  41081800 aaggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 41081892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 33734563 - 33734393
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||| |||||||||||||| |||| ||||| || |||||||||||||||| || ||||||||        ||||||||||||||||||||||||  | |     
T  33734563 aaggtttaaatatgtaaatcgtccctgtaatttagcgtgtttttggttttggttcctgtatctttttttgttctaaaacaacccctgtaagttaataact 33734464  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||| |||| |||||| || |||   || ||||||||||||   ||||||||||| ||||||||| ||||    
T  33734463 ttttgattttcgtccctcccatcaacttccgttacaaaaacgcacatgtggcaaacagaggatgacgtggc 33734393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 53527968 - 53528138
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||| ||||||| |||| | ||| || |||||||||||||||| |||||||||||        |||||||||||| |||||||||||  | |     
T  53527968 aaggcttaaatgtgtaaatcgtccctttaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaactcctgtaagttaataact 53528067  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||| |||| |||||| ||||||   || ||||||||||||   ||||||||||| ||||||||| ||||    
T  53528068 ttttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacagaggatgacgtggc 53528138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 210
Target Start/End: Original strand, 33732959 - 33733128
Alignment:
Q  41 aatgaaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttata 140  Q
    ||||||||||||||||||||||| |||| ||||| || |||||||||||||||| || |||||||         |||||||||||||||| |||||||      
T  33732959 aatgaaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgttcctgtatttttttttgttctaaaacaacccctataagttaat 33733058  T
Q  141 agcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    | | ||||| |||| |||| | ||||||   || ||||||||||||   |||||||||||||| ||||||    
T  33733059 aactttttgattttcgtccttcccgtcaacttccgttacaaaaacgcacatgtggcaaacggacgatgac 33733128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 48568589 - 48568450
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||| ||||| ||||         ||||||||||||||||||||||||  | | ||    
T  48568589 ggcttaaatatgtaaaaggtctctgtaagttcgcgtgtttttggttttcgtccccgtatttttttttgttctaaaacaacccctgtaagttaataacttt 48568490  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||| |||| |||||| ||||||   || ||||||||||||    
T  48568489 ttgattttcgtccctcccgtcaacttccgttacaaaaacg 48568450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 41083331 - 41083190
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc-nnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||||||| ||||| |||||         ||||||||||||||||||||||||  | |     
T  41083331 aggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggttttcgtccccgtatcttttttttgttctaaaacaacccctgtaagttaataact 41083232  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||| |||| |||||| ||||||   || ||||||||||||    
T  41083231 ttttgattttcgtccctcccgtcaacttccgttacaaaaacg 41083190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 48566994 - 48567086
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt 137  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||||| ||| |||||||        ||||||||||| |||||||||||    
T  48566994 aaggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggttttcgtcactgtatctttttttgttctaaaacaaaccctgtaagtt 48567086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 32558918 - 32558976
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||    
T  32558918 aggcttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgttttcgtccctgta 32558976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 32613883 - 32613941
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaa-gttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  32613883 ggcttaaatatgtaaaaggtccttgtaaagttcgcgtgtttttggttttcgtccctgta 32613941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 31795373 - 31795463
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt 137  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||||| | |||||||||        ||||||||||| |||||||||||    
T  31795373 ggcttaaatacgtaaaaggtccctgtaagttcgcgtgtttttggttttcggccctgtatctttttttgttctaaaacaaaccctgtaagtt 31795463  T

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Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 25529978 - 25529922
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccct 101  Q
    |||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||    
T  25529978 aaggcttaaataagtaaaaggtccttgtaagttggcgcgtttttggttttagtccct 25529922  T

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Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 3150079 - 3150020
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    ||||||||||||||||| ||||| ||||||||  || |||||||||||||||||||||||    
T  3150079 aggcttaaatatgtaaaaggtccctgtaagttaacgcgtttttggttttagtccctgtat 3150020  T

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Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 32615707 - 32615648
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||    
T  32615707 aaggtttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgtttttgtccctgta 32615648  T

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Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 53529595 - 53529431
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || |||| ||||| ||||| |||||||||||        |||||||| | ||||| |||||||  | |     
T  53529595 aaggcttaaatatgtaaatcgtccctgtaatttggcgtatttttagttttcgtccctgtatctttttttgttctaaaatagcccctataagttaataact 53529496  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatga 209  Q
    ||||| |||| |||||| ||||||   || |||||||||| |   ||||||||||||||||||||    
T  53529495 ttttgattttcgtccctcccgtcaacttccgttacaaaaatgcacatgtggcaaacggaggatga 53529431  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 55196568 - 55196633
Alignment:
Q  41 aatgaaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||| |||||||||| | ||| ||||||||||||||||||  |||||||||||||||| ||||||    
T  55196568 aatgatggcttaaataagaaaaaggtccttgtaagttcgcgcatttttggttttagtccatgtatc 55196633  T

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Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 3026942 - 3026883
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||| ||||| ||||| |||||||| ||  ||||||||||||||||||||||    
T  3026942 aaggcttaaataagtaaaaggtccctgtaagttggcacgtttttggttttagtccctgta 3026883  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 31656951 - 31657093
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnna-ttctaaaacaacccctgtaagttataagc 143  Q
    |||| |||||||||||||| |||| ||||| || || ||||||||||||| |||| |||||          ||||||||||| ||||||||||||  | |    
T  31656951 aaggattaaatatgtaaatcgtccctgtaatttggcatgtttttggttttcgtccttgtattttttttttgttctaaaacaatccctgtaagttaataac 31657050  T
Q  144 attttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
     ||||| |||| |||||| |||||| | |||||||||||||||    
T  31657051 tttttgcttttcgtccctcccgtcaaactctgttacaaaaacg 31657093  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 41879927 - 41880036
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttg 149  Q
    |||||||||||||| ||   |||||||||| |||||||||||||| ||| |||||||        ||||||||||| || |||||||||||| | |||||    
T  41879927 ttaaatatgtaaatcgtttctgtaagttcgtgtgtttttggttttcgtctctgtatctttttttgttctaaaacaaaccttgtaagttataaacgttttg 41880026  T
Q  150 gttttagtcc 159  Q
     |||| ||||    
T  41880027 attttcgtcc 41880036  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 45981405 - 45981449
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttg 89  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||    
T  45981405 aaggcttaaatatgtaaaacgtccttgtaatttcgcgtgtttttg 45981449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 24613669 - 24613614
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||| ||||| ||||||||||||  ||||| ||||| |||||||||    
T  24613669 cttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgta 24613614  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 33780655 - 33780714
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||| |||||||  |||| ||||||||||||| ||||| ||||| |||||||||    
T  33780655 aaggcttaaaaatgtaaaatgtccctgtaagttcgcgtattttttgttttcgtccctgta 33780714  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 24612279 - 24612325
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    ||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  24612279 gcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 24612325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 32559943 - 32559901
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgttttt 88  Q
    ||||||||||||||||| ||||  |||||||||||||||||||    
T  32559943 aggcttaaatatgtaaaaggtctctgtaagttcgcgtgttttt 32559901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 33781550 - 33781496
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||| ||||| |||||||||||| |||||| ||||| |||| ||||    
T  33781550 ttaaatatgtaaaaggtccctgtaagttcgcgcgttttttgttttcgtccttgta 33781496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 8391399 - 8391443
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttg 89  Q
    ||||||||||||||||||  |||| ||||| ||||||||||||||    
T  8391399 aaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttg 8391443  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 33551586 - 33551641
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccct 101  Q
    |||||||||||||||||| || ||| ||||||| ||| |||||| ||||||||||||    
T  33551586 aaggcttaaatatgtaaaaggccct-gtaagttggcgcgttttttgttttagtccct 33551641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 16308562 - 16308705
Alignment:
Q  44 gaaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc-nnnnnnnattctaaaacaacccctgtaagttataag 142  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||         ||||||||||  ||||||||||||||||    
T  16308562 gaaggcttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgtatcttttttttgttctaaaacagaccctgtaagttataag 16308661  T
Q  143 cattttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    | || || |||| |||||| ||||||| ||||||||||||||||    
T  16308662 ccttgtgcttttggtccctaccgtcatcatctgttacaaaaacg 16308705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 27756845 - 27756705
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||| | ||||||||||||||||| ||||| |||||||||||        ||||||||||| |||||||| |||||| |||    
T  27756845 aggcttaaatatgtaaatcgtccctctaagttcgcgtgttttttgttttcgtccctgtatctttttttgttctaaaacaaaccctgtaaattataaacat 27756746  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    |||| |||| |||||||||||||  || |||||||||||||    
T  27756745 tttgcttttggtccctgccgtcagcatttgttacaaaaacg 27756705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 18201403 - 18201224
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattt 147  Q
    |||||||||||||||| |||| |||||||| |||||||||| ||||| || | ||||||        ||   ||||||| ||||||||||||||  ||      
T  18201403 gcttaaatatgtaaattgtccctgtaagtttgcgtgttttttgttttcgttcttgtatctgtttttgttgcgaaacaactcctgtaagttataaatataa 18201304  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgt 227  Q
    ||||||||||  ||| |||||| ||||| ||||||||||||||||||| |||| ||||||||| || ||| |||||||||    
T  18201303 tggttttagtttctgtcgtcatcatctgctacaaaaacgtctatgtggaaaacagaggatgacgtgacgatgtgtgacgt 18201224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 16310157 - 16309976
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattt 147  Q
    |||||||||||||||| |||| ||||||||||  ||||||||||||| || ||| |||         ||||||||||  || |||||||||||| |||||    
T  16310157 gcttaaatatgtaaatcgtccatgtaagttcgtatgtttttggttttcgttcctatatatttttttgttctaaaacagaccttgtaagttataaacattt 16310058  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtgg 229  Q
    || |||| |||||||||||||  ||||||||||||||||  ||||||    ||||| | |||||||| || |||||||||||    
T  16310057 tgcttttggtccctgccgtcagcatctgttacaaaaacgcttatgtgtatgacggaagctgacatggtgatgtgtgacgtgg 16309976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 38624714 - 38624855
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||        |||||||||||||||| |||||||  | |     
T  38624714 aaggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctataagttaataact 38624813  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||| |||| |||||| ||||||   || ||||||||||||    
T  38624814 ttttgattttcgtccctcccgtcaacttccgttacaaaaacg 38624855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 30334068 - 30333899
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||| | |||| | ||| || |||||||||||||||| |||||||||||        ||||||||||||||||||||||||  | |     
T  30334068 aaggcttaaatatgtaagtcgtccctataatttggcgtgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataact 30333969  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||| |||| |||||| ||||||   ||  |||| ||||||   ||||||||||||||||||||||||||    
T  30333968 ttttgattttcgtccctcccgtcaacttccattac-aaaacgcacatgtggcaaacggaggatgacatggc 30333899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 25916335 - 25916175
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    ||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        |||||||||||||||| |||||||  | | ||||    
T  25916335 cttaaatatgtaaatcgtccatgtaatttggcgtgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctataagttaataacttttt 25916236  T
Q  149 ggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatga 209  Q
      |||| |||||| ||||||   || ||||||||||||   |||||| |||||||||||||    
T  25916235 aattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggtaaacggaggatga 25916175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 1418995 - 1418832
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| ||||| ||  ||||||||| ||||| |||||||||||        |||||||||||||||| |||||||  | | ||    
T  1418995 ggcttaaatatgtaaatcgtccctgtaatttgacgtgttttttgttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataacttt 1418896  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||| |||| |||||| ||||||   || ||||||||||||   ||| |||||||||||||||||    
T  1418895 ttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgcggcaaacggaggatgac 1418832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 30332283 - 30332451
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| ||||| || |||| ||||| ||||| |||||||||||        |||||||||||||||| |||||||  | | ||    
T  30332283 ggcttaaatatgtaaatcgtccctgtaatttggcgtattttttgttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataacttt 30332382  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||| |||| |||||| | ||||   || ||||||||||||   |||||| |||||||||||||| ||||    
T  30332383 ttgattttcgtccctcctgtcaacttccgttacaaaaacgcacatgtggaaaacggaggatgacgtggc 30332451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 38626231 - 38626139
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt 137  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||| ||||||        ||||||||||| |||||||||||    
T  38626231 aaggcttaaatatgtaaaaggtccctgtaagttcgcatgtttttggttttcgtccatgtatctttttttgttctaaaacaaaccctgtaagtt 38626139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 8874333 - 8874191
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| ||||| ||  | ||||||||||||| ||||||||||         ||||||||||||||||||||||||  | | ||    
T  8874333 ggcttaaatatgtaaatcgtccctgtaatttgacctgtttttggttttcgtccctgtatatttttttgttctaaaacaacccctgtaagttaataacttt 8874234  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtct 189  Q
    ||| |||| ||||||  ||||| | ||||||||||||| ||||    
T  8874233 ttgctttttgtccctctcgtcaaactctgttacaaaaatgtct 8874191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 17555063 - 17554941
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttgg-ttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| |||| ||||||||||         ||||||||||||||||| ||||||  | | |    
T  17555063 ggcttaaatatgtaaattgtccatgtaagttcgcgtgtttttggtttttcgtccctgtattattttttgttctaaaacaacccctgcaagttaataactt 17554964  T
Q  146 tttggttttagtccctgccgtca 168  Q
    |||| |||| |||||| ||||||    
T  17554963 tttgattttcgtccctcccgtca 17554941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 184
Target Start/End: Original strand, 36619546 - 36619682
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnna-ttctaaaacaacccctgtaagttataagcattt 147  Q
    ||||||||||||||| |||| | ||| || ||||||||||| |||| |||||||||||         |||||||||||||||| |||||||  ||| |||    
T  36619546 cttaaatatgtaaatcgtccctataatttggcgtgtttttgattttcgtccctgtatcttttttttgttctaaaacaacccctataagttaatagctttt 36619645  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaa 184  Q
    || |||| |||||| |||||| | |||||||||||||    
T  36619646 tgcttttcgtccctcccgtcaaactctgttacaaaaa 36619682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 39103471 - 39103331
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| || || |||||        |||||||||||||| | |||||||  | | |    
T  39103471 aggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttggttttcgttccagtatctttttttgttctaaaacaacccgtataagttaataactt 39103372  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||  ||| |||||| |||||| | ||| |||||||||||    
T  39103371 tttgcgtttcgtccctcccgtcaaactctattacaaaaacg 39103331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 28592081 - 28592135
Alignment:
Q  51 taaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    |||||||||||| |||||||||||||||||||||||||  |||| ||||||||||    
T  28592081 taaatatgtaaaaggtccttgtaagttcgcgtgttttttattttcgtccctgtat 28592135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 33489961 - 33489899
Alignment:
Q  44 gaaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||||| |||||  |||| |||||||| ||| |||||| |||||||||||||||||    
T  33489961 gaaggcttaaataagtaaaatgtccctgtaagttagcgcgtttttcgttttagtccctgtatc 33489899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 28592477 - 28592421
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgt 103  Q
    ||||||||||||||||  |||||| |||||||||||||||||| ||||| ||||||||    
T  28592477 aggcttaaatatgtaagaggtcct-gtaagttcgcgtgttttttgttttcgtccctgt 28592421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 39101716 - 39101854
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattt 147  Q
    |||||||||||||||| |||| ||||| || | | |||||||||||| ||  |||| ||        ||||||||||||||||||| ||||  | | |||    
T  39101716 gcttaaatatgtaaatcgtccctgtaatttggtgcgtttttggttttcgtttctgtgtctttttttgttctaaaacaacccctgtatgttaataactttt 39101815  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    || |||| |||||| |||||| | |||||||||||||||    
T  39101816 tgcttttcgtccctcccgtcaaactctgttacaaaaacg 39101854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 8872522 - 8872658
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    ||||||||||||| | |||| ||||| || |||||||||||||||| || ||||||||        |||||||||||||||  |||||||  | | ||||    
T  8872522 cttaaatatgtaattcgtccctgtaatttggcgtgtttttggttttcgttcctgtatctttttttgttctaaaacaacccccataagttaataacttttt 8872621  T
Q  149 ggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    | |||| |||||  |||||| | |||||||||||||||    
T  8872622 gcttttcgtccc-cccgtcaaactctgttacaaaaacg 8872658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 35929523 - 35929579
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||| ||||| |||||||||||||||| | | |||||||||| |||||||||    
T  35929523 gcttaaataagtaaaaggtccttgtaagttcgtgagattttggttttcgtccctgta 35929579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 9672411 - 9672353
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||| |||| ||||| ||||||||||||  ||||| ||||| |||||||||    
T  9672411 aggcttaaatatataaaaggtccctgtaagttcgcgcattttttgttttcgtccctgta 9672353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 11771196 - 11771257
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||| ||||||||||||| ||| |  ||||||| ||||||||||| |||| |||||||||||    
T  11771196 aaggtttaaatatgtaaaaggttcgagtaagtttgcgtgtttttgattttcgtccctgtatc 11771257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 25914561 - 25914658
Alignment:
Q  118 taaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||||||||||||| |||||  | | ||||  |||| |||||| ||||||   || ||||||||||||   ||||||||||||||||||||| ||||    
T  25914561 taaaacaacccctgttagttaataacttttttattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgacgtggc 25914658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 2049 - 2208
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||||  |||||||||||        ||||||||||||||| ||||||||||| |     
T  2049 aaggcttaaatatgaaaaatgtccttgtaagttcgcgtgtttttggtttccgtccctgtatctttttttgttctaaaacaacccccgtaagttataaacg 2148  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggag 204  Q
    |||||||||||||||||  ||| |   ||||||||||||||||  |  ||||||||||||    
T  2149 ttttggttttagtccctaacgttaacttctgttacaaaaacgttgagctggcaaacggag 2208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 221
Target Start/End: Original strand, 10707675 - 10707843
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||||||||||| ||||| |||| |||||||||||||||||||  |||| ||||||||||         ||||| ||||||||| ||||||||||| | |    
T  10707675 aggcttaaatatataaattgtccctgtaagttcgcgtgttttttattttcgtccctgtatttttt----ttctataacaacccccgtaagttataaacgt 10707770  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtg 221  Q
    ||||||||| |||||| || ||||   ||||||||||||||| |||||||||||| || |||||| ||||||||||    
T  10707771 tttggttttggtccctaccatcat---ctgttacaaaaacgtttatgtggcaaacagaagatgacctggcgacgtg 10707843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 1256712 - 1256851
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||| |||||||||||       ||||||||||||||||| |||||||  | |     
T  1256712 aaggcttaaatatgtaaatcgtccttgtaatttggcgtgtttttggttttcgtccctgtatctttttttattctaaaacaacccctataagttaataact 1256811  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaa 184  Q
    ||||  |||| |||||| |||||| | |||||||||||||    
T  1256812 ttttacttttcgtccctcccgtcaaactctgttacaaaaa 1256851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 281
Target Start/End: Complemental strand, 10699996 - 10699760
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    ||||||||||| ||| || | ||||||||||||||||||| || || |||| ||||||        |||||||||||||| |||||||||||| | ||||    
T  10699996 cttaaatatgtgaattgttcgtgtaagttcgcgtgttttttgtatttgtccatgtatctttttttgttctaaaacaacccttgtaagttataaacgtttt 10699897  T
Q  149 ggttttagtc------cctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtggtagatgtcgctga 242  Q
    |||||| ||       |||| |||||| |||| |||||||||||||||||||||||||   |||||   ||||||  |||||| ||| ||  | ||||||    
T  10699896 ggttttggttttggttcctgtcgtcatcatcttttacaaaaacgtctatgtggcaaacaagggatggtgtggcga--tgtgacatggcagtcgacgctga 10699799  T
Q  243 tgtagcattccatatgctgagtcacaaatttagagggac 281  Q
    | || | ||||||||||||||||||||| ||||||||||    
T  10699798 tatatcgttccatatgctgagtcacaaagttagagggac 10699760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 1258501 - 1258359
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt-ataagc 143  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| |||||||||||        |||||||||||||||| || ||| |||| |    
T  1258501 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataggttaataaac 1258402  T
Q  144 attttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
     ||||| |||| |||||| |||||| | |||||||||||||||    
T  1258401 tttttgcttttcgtccctcccgtcaaactctgttacaaaaacg 1258359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 8745432 - 8745571
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||||| |||||| ||||        ||||||||||||||| ||||||||  | | ||    
T  8745432 ggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctatatctttttttgttctaaaacaacccccgtaagttaataacttt 8745531  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||| |||| |||||| |||||| | |||||||||||||||    
T  8745532 ttgcttttcgtccctcccgtcaaactctgttacaaaaacg 8745571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 8752857 - 8752717
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    ||||||||||||||| |||  ||||| || |||||||||||||||| |||||||||||        ||||||||||||||||| ||||||  | | ||||    
T  8752857 cttaaatatgtaaatcgtctctgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctgcaagttaataacctttt 8752758  T
Q  149 ggttttagtccctgccgtcataatctgttacaaaaacgtct 189  Q
    | |||| |||||| |||||| | | ||||||||||||||||    
T  8752757 gcttttcgtccctcccgtcaaactttgttacaaaaacgtct 8752717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 19084178 - 19084016
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattt 147  Q
    |||||||||||||||  |||| ||||| || |||||||||||||||| |||||||||||        ||||||||||||||||||| ||||  | | |||    
T  19084178 gcttaaatatgtaaaccgtccctgtaatttagcgtgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtatgttaataactttt 19084079  T
Q  148 tggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    || |||| |||||| ||||||   || ||||||| ||||   |||||||||| ||||||||||    
T  19084078 tgattttcgtccctcccgtcaacttccgttacaataacgcacatgtggcaaatggaggatgac 19084016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 11065715 - 11065656
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||||||    
T  11065715 aaggcttaaatatgtaaaaggtccttgtaagttcgcgcatttttggttttcgtccctgta 11065656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 1443417 - 1443531
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||| || ||||| ||||||||| ||||||||||||||| ||||||||||         ||||||||||| ||| ||||||| | | | ||    
T  1443417 ggcttaaatatgtgaaaggtccctgtaagttcacgtgtttttggttttcgtccctgtatttttttttgttctaaaacaaacccggtaagttgttaacttt 1443516  T
Q  147 ttggttttagtccct 161  Q
    |||||||||||||||    
T  1443517 ttggttttagtccct 1443531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 10711907 - 10711742
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatgg 214  Q
    |||||||||||||| ||||| ||||||   |||||| |||  | ||||||||||| |||| |||||||||  | |||||||||||  ||||||||  |||    
T  10711907 ttctaaaacaacccatgtaaattataaatgttttggctttgattcctgccgtcatcatctattacaaaaatatttatgtggcaaatagaggatgatgtgg 10711808  T
Q  215 cgacgtgtgacgtggtagatgtcgctgatgtagcattccatatgctgagtcacaaatttagaggga 280  Q
    |||| ||||| |||| ||| | || ||| ||  |||| || ||| ||||||||||| |||||||||    
T  10711807 cgacatgtgatgtggcagacgacgttgaagtgtcatttcaaatgttgagtcacaaagttagaggga 10711742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 10711317 - 10711387
Alignment:
Q  150 gttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtg 221  Q
    ||||| |||||| ||||||| ||||||||||||| ||| |||||||||||| || |||||| ||||||||||    
T  10711317 gttttggtccctaccgtcatcatctgttacaaaa-cgtttatgtggcaaacagaagatgacctggcgacgtg 10711387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 4496505 - 4496563
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    |||||||||| |||||| ||| |||||||||| ||||||||||||||| |||| |||||    
T  4496505 ggcttaaataggtaaatcgtcattgtaagttcacgtgtttttggttttcgtccatgtat 4496563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 7796748 - 7796806
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| |||||  |||||||||||  ||||||||||| |||||||||    
T  7796748 aggcttaaatatgtaaaaggtcccagtaagttcgcgcatttttggtttttgtccctgta 7796806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 19402182 - 19402124
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| |||||||||||||||||   ||||| ||||| |||||||||    
T  19402182 aggcttaaatatgtaaaaggtccttgtaagttcgcacattttttgttttcgtccctgta 19402124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 843582 - 843533
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    |||||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  843582 aaggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 843533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 4296397 - 4296328
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaa 184  Q
    |||||||| || || |||||||||||| | |||||||||| |||| ||||||||| |||| |||||||||    
T  4296397 ttctaaaataaaccgtgtaagttataaacgttttggttttggtccatgccgtcatcatctattacaaaaa 4296328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 7678708 - 7678647
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||||||||||| |||| ||||| || ||||||||||| |||| |||| ||||||    
T  7678708 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttgctttttgtccttgtatc 7678647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 19598037 - 19597984
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtcc 99  Q
    ||||||||||||||||||||||| ||||||| ||||  ||||||||||| ||||    
T  19598037 aggcttaaatatgtaaatggtccctgtaagtccgcgcatttttggttttggtcc 19597984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 19579885 - 19579949
Alignment:
Q  40 gaatgaaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||| |||||||||||||||||||| ||| | ||||||||||  ||||||||||| |||| ||||    
T  19579885 gaataaaggcttaaatatgtaaatgctccgtataagttcgcgcatttttggttttggtccttgta 19579949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 19596336 - 19596400
Alignment:
Q  40 gaatgaaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||| ||||||||||||||||||| |||| | ||||||||||  ||||||||||| |||| ||||    
T  19596336 gaataaaggcttaaatatgtaaattgtccctataagttcgcgcatttttggttttggtccttgta 19596400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 19082734 - 19082829
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    |||||||||||||| | |||||||  | | ||||| |||| |||||| ||||||   || ||||||||||||   |||||||||||||||||||||    
T  19082734 ttctaaaacaacccatataagttaataactttttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgac 19082829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 842186 - 842243
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||| | ||||| ||||||||||||  ||||| ||||| |||||||||    
T  842186 ggcttaaatatgtataaggtccctgtaagttcgcgcattttttgttttcgtccctgta 842243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 28048978 - 28049027
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggtttt 94  Q
    ||||||||||||| | || ||||  |||||||||||||||||||||||||    
T  28048978 aaggcttaaatatatcaaaggtctctgtaagttcgcgtgtttttggtttt 28049027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 53)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 169276 - 169165
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagt-----ccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatga 209  Q
    |||||||||||| | |||||||||||| | |||||||||| ||     || ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  169276 ttctaaaacaactcttgtaagttataaacgttttggttttggtctctgccgtgccgtcatcatctgttacaaaaacgtctatgtggcaaacgaaggatga 169177  T
Q  210 catggcgacgtg 221  Q
    ||||||||||||    
T  169176 catggcgacgtg 169165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 186
Target Start/End: Complemental strand, 44465147 - 44465010
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| | |||| |||||         ||||||||||  || |||||||||||| ||||||    
T  44465147 cttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggttctcgtccttgtattttttgttgttctaaaacagaccttgtaagttataaacatttt 44465048  T
Q  149 ggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    | |||| |||||||||||||  ||||||||||||||||    
T  44465047 gcttttggtccctgccgtcagtatctgttacaaaaacg 44465010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 45499303 - 45499444
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||        ||||||||||||||||||||||||  | |     
T  45499303 aaggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctgtaagttaataact 45499402  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||| |||| |||||| ||||||   || ||||||||||||    
T  45499403 ttttgattttcgtccctcccgtcaacttccgttacaaaaacg 45499444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 22053128 - 22053263
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttg 149  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||        ||||||||||||||| ||||||||||| | |||||    
T  22053128 ttaaatatgtaaaaggtctttgtaagttcgcgtgttttttgttttcgtccctgtatctttttttgttctaaaacaacccc-gtaagttataaacgttttg 22053226  T
Q  150 gttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||||||||||  ||| |   |||||||||||||||    
T  22053227 gttttagtccctaacgttaacttctgttacaaaaacg 22053263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 6844157 - 6844042
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||  ||| ||||||        ||||||||||| || |||||||| | ||| |    
T  6844157 aggcttaaatatgtaaaaggtccttgtaagttcgcgtgtttttggttttcatccttgtatctttttttgttctaaaacaaaccttgtaagttgttagctt 6844058  T
Q  146 tttggttttagtccct 161  Q
    ||||||||||||||||    
T  6844057 tttggttttagtccct 6844042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 16142226 - 16142365
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||         ||||||||||| |||||||||||| || | ||    
T  16142226 ggctaaaatatgtaaatcgtccttgtaagttcgcgtgtttttggttttcgtctctgtatttttttctgttctaaaacaaaccctgtaagttacaaacgtt 16142325  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||| |||| | |||| ||||||  ||||||||||||||||    
T  16142326 ttgattttcggccctcccgtcagcatctgttacaaaaacg 16142365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 38730124 - 38729983
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttgg-ttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagc 143  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||| |||| |||||||||||        ||||||||||| |||||||||||| || |    
T  38730124 aaggcttaaatatataaatcatccttgtaagttcgcgtgtttttggtttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttacaaac 38730025  T
Q  144 attttggttttagtccctgccgtcataatctgttacaaaaac 185  Q
     ||||| |||| ||||||||||| |   ||||||||||||||    
T  38730024 cttttgattttcgtccctgccgttagcctctgttacaaaaac 38729983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 1841814 - 1841646
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||||| |||| || || || |||||||||||||||| |||||||||||        ||||||||||||||||||||||||  | | ||    
T  1841814 ggcttaaatatgtaaatcgtccctgaaatttggcgtgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataacttt 1841715  T
Q  147 ttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||  |||| |||||| ||||||   || ||||||||||||   |||||||||||| |||||||| ||||    
T  1841714 tttattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacgaaggatgacgtggc 1841646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 35588125 - 35588278
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    |||||||||||||| |||| |||| |||||||||||||| |||||||||| |||| |||||        |||||||||||||||  ||||||||||| |     
T  35588125 aaggcttaaatatggaaatcgtccatgtaagttcgcgtgcttttggttttcgtccatgtatatttttttattctaaaacaaccctcgtaagttataaacg 35588224  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaac 200  Q
    |||||| ||| ||| |||||| |||   || |||||||||||||| ||||||||||    
T  35588225 ttttggctttggtctctgccgacat--cctcttacaaaaacgtctgtgtggcaaac 35588278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 40303292 - 40303432
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||        |||||||||||||||| |||||||  | | |    
T  40303292 aggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctataagttaataactt 40303391  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    |||| |||| |||||| ||||||   || ||||||||||||    
T  40303392 tttgattttcgtccctcccgtcaacttccgttacaaaaacg 40303432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 15346863 - 15347042
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    |||| ||||||||||||| |||   ||||||| ||||||||||||||||  ||| | ||||        |||||||||||||| ||||| |||||| | |    
T  15346863 aggcctaaatatgtaaattgtctcagtaagtttgcgtgtttttggttttcatccatatatctttttttgttctaaaacaacccttgtaaattataaacgt 15346962  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgac 225  Q
    |||| |||| |||| |||||||||||||||||||||||||   ||| ||| |||||  |  |||||||||||||||||||    
T  15346963 tttgcttttggtccttgccgtcataatctgttacaaaaacacatatatggaaaacgacgactgacatggcgacgtgtgac 15347042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 28563374 - 28563513
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| |||| ||||||        |||||||||||||||| |||||||  | |     
T  28563374 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttttcttctaaaacaacccctataagttaataact 28563473  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaa 184  Q
    ||||| |||| |||||| |||||| | |||||||||||||    
T  28563474 ttttgcttttcgtccctcccgtcaaactctgttacaaaaa 28563513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 13947745 - 13947910
Alignment:
Q  44 gaaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagc 143  Q
    ||||| |||||||||||||| |||| ||||| || |||||||||||||||| |||| ||||||        |||||||||||||||| |||||||  | |    
T  13947745 gaaggtttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtcc-tgtatctttttttgttctaaaacaacccctataagttaataac 13947843  T
Q  144 attttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
     ||||| |||| |||||| ||||||   || ||||||||||||   |||||||||||||||||||||    
T  13947844 tttttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgac 13947910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 14088934 - 14089099
Alignment:
Q  44 gaaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagc 143  Q
    ||||| |||||||||||||| |||| ||||| || |||||||||||||||| |||| ||||||        |||||||||||||||| |||||||  | |    
T  14088934 gaaggtttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtcc-tgtatctttttttgttctaaaacaacccctataagttaataac 14089032  T
Q  144 attttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
     ||||| |||| |||||| ||||||   || ||||||||||||   |||||||||||||||||||||    
T  14089033 tttttgattttcgtccctcccgtcaacttccgttacaaaaacgcacatgtggcaaacggaggatgac 14089099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 40304821 - 40304731
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt 137  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||        ||||||||||| |||||||||||    
T  40304821 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 40304731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 202
Target Start/End: Complemental strand, 15348499 - 15348342
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| ||||||||| | |||| | ||||||||||| ||| |||||||        || ||||||||||| ||||||||||||       
T  15348499 aaggcttaaatatgtaaatcgtccttgtacgctcgcatctttttggtttttgtctctgtatctttttttgttgtaaaacaacccatgtaagttataaatg 15348400  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacgg 202  Q
    ||||  |||| ||||||||  ||||||||||||||||||||   | ||||||||||||    
T  15348399 ttttacttttggtccctgcattcataatctgttacaaaaactcatgtgtggcaaacgg 15348342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 38728183 - 38728323
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||| | |||| ||||||||| || |||||||||||| |||| ||||||        ||||||||||| ||||| |||||| || |     
T  38728183 aaggcttaaatatgtaa-tcgtccctgtaagttcacgagtttttggttttcgtccatgtatctttttttgttctaaaacaaaccctgcaagttacaaacg 38728281  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacg 186  Q
    ||||| |||| |||||| ||||||||||||||||| ||||||    
T  38728282 ttttgattttcgtccctcccgtcataatctgttacgaaaacg 38728323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 44421402 - 44421223
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||||||||||||||||  ||| ||||| || |||||||||| ||||| |||| ||||||        ||||||||||   || ||||||||||| | |    
T  44421402 aggcttaaatatgtaaatcatccctgtaaattggcgtgttttttgttttcgtccttgtatccttttttcttctaaaacagagccggtaagttataaacgt 44421303  T
Q  146 tttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgac 225  Q
    |||| |||| ||| |||||||||  ||||||||||||||||| |||||| | |||||  | |||| |||| |||||||||    
T  44421302 tttgcttttggtctctgccgtcaccatctgttacaaaaacgtttatgtgtctaacggtagctgacgtggcaacgtgtgac 44421223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 45493092 - 45493001
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt 137  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||        ||||||||||| |||||||||||    
T  45493092 aggcttaaatatgtaaaaggtccctgtaaattcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 45493001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 45500834 - 45500743
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagtt 137  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||        ||||||||||| |||||||||||    
T  45500834 aggcttaaatatgtaaaaggtccctgtaaattcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 45500743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 22060538 - 22060428
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc-nnnnnnnattctaaaacaacccctgtaagttataagcatt 146  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||| |||||| ||||         || |||||||||||||| ||||||||||| ||    
T  22060538 gcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggttttcgtccctatatcttttttttgttttaaaacaacccctgaaagttataagcgtt 22060439  T
Q  147 ttggttttagt 157  Q
    |||||||||||    
T  22060438 ttggttttagt 22060428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 1840155 - 1840320
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||||| || | ||||||        |||||||||||||||| |||||||  | |     
T  1840155 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggtttttgttcttgtatctttttttgttctaaaacaacccctataagttaataact 1840254  T
Q  145 ttttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgac 210  Q
    ||||| |||| |||||| ||||||   || |||||||||||    ||||||||||| |||||||||    
T  1840255 ttttgattttcgtccctcccgtcaacttccgttacaaaaacacacatgtggcaaacagaggatgac 1840320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 28165657 - 28165717
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||    
T  28165657 aggcttaaatatgtaaaaggtccatgtaagttagcgcgtttttggttttagtccctgtatc 28165717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 16143656 - 16143541
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcat 145  Q
    ||||||||||||||||| |||||  ||||| | ||||||||||| |||| |||||||||||        ||||||||||| ||||||||||| | | | |    
T  16143656 aggcttaaatatgtaaaaggtccccgtaagcttgcgtgtttttgattttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttgttaactt 16143557  T
Q  146 tttggttttagtccct 161  Q
    ||||||||||||||||    
T  16143556 tttggttttagtccct 16143541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 44463569 - 44463746
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttg 149  Q
    |||||||||||||| |||  |||||||||| |||||||||||||| ||  ||||||         |||||||| |  ||||||||||||||||| || ||    
T  44463569 ttaaatatgtaaatcgtctatgtaagttcgtgtgtttttggttttcgtttctgtatttttttg--ttctaaaatagaccctgtaagttataagctttatg 44463666  T
Q  150 gttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacgtgg 229  Q
     |||| ||||||  ||| || ||||||||||||||||  |||||| | |||||  | ||||||||| |||||||||||||    
T  44463667 cttttggtccctatcgttatcatctgttacaaaaacgcttatgtgtctaacggcagctgacatggcaacgtgtgacgtgg 44463746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 472723 - 472857
Alignment:
Q  50 ttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttg 149  Q
    |||||||||||||| || | ||||||||||| |||||| ||||||  | |||| |||       ||||||||||||| | |||||||||||| | |||||    
T  472723 ttaaatatgtaaatcgttcctgtaagttcgcttgttttcggttttcattcctgaatctttttttattctaaaacaactcatgtaagttataaacgttttg 472822  T
Q  150 gttttagtccctgccgtcataatctgttacaaaaa 184  Q
     |||| |||||| | ||||| ||||||||||||||    
T  472823 tttttggtccctacagtcatcatctgttacaaaaa 472857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 1035460 - 1035363
Alignment:
Q  118 taaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggc 215  Q
    ||||||||||| |||||||| || || ||||||||||  ||| | ||||||| ||||||||||||||||||||| ||  ||| ||| |||||||||||    
T  1035460 taaaacaacccttgtaagttgtatgcgttttggttttgatccataccgtcatcatctgttacaaaaacgtctatatgataaatggatgatgacatggc 1035363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 44097414 - 44097354
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    ||||||||||||| |||| ||||  ||||||||||||||||||||||||| ||||||||||    
T  44097414 aaggcttaaatatataaaaggtctctgtaagttcgcgtgtttttggttttcgtccctgtat 44097354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 7317392 - 7317504
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcatttt 148  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||| |||| ||||||        ||||||||||| |||| |||||| | | | ||||    
T  7317392 cttaaatatgtaaaagatccctgtaagttcgcgtgtttttggttttcgtccttgtatctttttttgttctaaaacaaaccctataagttgttaacttttt 7317491  T
Q  149 ggttttagtccct 161  Q
    |||||| ||||||    
T  7317492 ggttttggtccct 7317504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 18224906 - 18224847
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||| || | ||||||||||||||||||||||||    
T  18224906 aaggcttaaatatgtaaaaggtccctgtaatttagtgtgtttttggttttagtccctgta 18224847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 22054332 - 22054391
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||||    
T  22054332 aaggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 22054391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 22060219 - 22060162
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||||    
T  22060219 ggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggttttcgtccctgta 22060162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 44492371 - 44492311
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||||||||| | ||| |||||||| |||||||||||||||| |||||| ||||    
T  44492371 aggcttaaatatgtaaacgatccatgtaagtttgcgtgtttttggttttcgtccctctatc 44492311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 6842713 - 6842774
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||| ||||||||||||| ||| | |||||||| ||||||||||||||||  ||||||||||    
T  6842713 aaggtttaaatatgtaaaaggttcctgtaagtttgcgtgtttttggttttcatccctgtatc 6842774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 28167391 - 28167330
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||| ||||||| ||||| ||||| |||||||| ||| ||||||||||||||||| ||||||    
T  28167391 aaggtttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtccttgtatc 28167330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 28564014 - 28563957
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||| |||| ||||| |||||||||||||||||| | |||||||||| |||||||||    
T  28564014 ggctttaataagtaaaaggtccttgtaagttcgcgagattttggttttcgtccctgta 28563957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 44904532 - 44904585
Alignment:
Q  52 aaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    ||||||||||| |||| ||||||||| |||  ||||||||||||||||||||||    
T  44904532 aaatatgtaaaaggtctttgtaagttagcgcatttttggttttagtccctgtat 44904585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 8803362 - 8803306
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccct 101  Q
    |||||||||||| |||||| ||| |||||||||||| || |||||||||| ||||||    
T  8803362 aaggcttaaataagtaaatcgtctttgtaagttcgcatgattttggttttcgtccct 8803306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 9660844 - 9660955
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||||||||  ||  ||||||        |||||||| || ||||||||||| | |||     
T  9660844 aaggcttaaatatataaaaggtcat-gtaagttcgcgtgtttttggttttcatcgttgtatctttttttgttctaaaataaaccctgtaagttgttagct 9660942  T
Q  145 ttttggttttagt 157  Q
    |||||||||||||    
T  9660943 ttttggttttagt 9660955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 40127242 - 40127297
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||||| ||||||||||||   |||| ||||| |||||||||    
T  40127242 cttaaatatgtaaatggtccctgtaagttcgcgcaatttttgttttggtccctgta 40127297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 43516396 - 43516455
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||| ||||||  ||||| ||||| |||||||||    
T  43516396 aaggcttaaatatgtaaaaggtccctgtaatttcgcgcattttttgttttcgtccctgta 43516455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 43518138 - 43518079
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||| |||||| ||| |||||||||| |  ||||||||||| |||||||||    
T  43518138 aaggcttaaatatttaaatgatccctgtaagttcgtgcatttttggttttggtccctgta 43518079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 44095359 - 44095398
Alignment:
Q  48 gcttaaatatgtaaatggtccttgtaagttcgcgtgtttt 87  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  44095359 gcttaaatatgtaaaaggtccatgtaagttcgcgtgtttt 44095398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 44820991 - 44820932
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    |||||||||||||||||| ||||| ||||| ||||||  ||||| ||||| |||||||||    
T  44820991 aaggcttaaatatgtaaaaggtccctgtaaattcgcgcattttttgttttcgtccctgta 44820932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 10343988 - 10344046
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    |||||||||||||||| ||||| |||||||||| |  ||||| ||||| ||||||||||    
T  10343988 ggcttaaatatgtaaaaggtccatgtaagttcgtgcattttttgttttcgtccctgtat 10344046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 44419885 - 44419987
Alignment:
Q  127 ccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcgacgtgtgacg 226  Q
    ||||||||||||||| | ||||| ||||  ||| ||||||||| ||| ||||||||||||  |||||| | |||||  | |||| |||||| |||||| |    
T  44419885 ccctgtaagttataaacgttttgcttttgatccttgccgtcatcatccgttacaaaaacgcttatgtgtctaacggcagctgacgtggcgatgtgtgatg 44419984  T
Q  227 tgg 229  Q
    |||    
T  44419985 tgg 44419987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 44906196 - 44906135
Alignment:
Q  45 aaggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||| ||||| ||||| | |||||| ||| ||||||||||||| ||| ||||||    
T  44906196 aaggcttaaataagtaaaaggtccctataagttagcgcgtttttggttttaatccttgtatc 44906135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 9262951 - 9262899
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtcc 99  Q
    |||||||||| ||||| ||| | |||||||||||| || ||||||||||||||    
T  9262951 ggcttaaataagtaaaaggttcctgtaagttcgcgcgtatttggttttagtcc 9262899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 9662235 - 9662192
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttgg 90  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||    
T  9662235 aggcttaaatatgtaaa-ggtccctggaagttcgcgtgtttttgg 9662192  T

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Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 12027999 - 12028059
Alignment:
Q  151 ttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgaca 211  Q
    |||||||| || ||||||| |||| |||||||||||| || ||| ||||||| ||||||||    
T  12027999 ttttagtctctaccgtcatcatctattacaaaaacgtataagtgacaaacgggggatgaca 12028059  T

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Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 16289034 - 16288974
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    ||||||||||||||||| | ||| ||||||||  || |||||| |||||||| ||||||||    
T  16289034 aggcttaaatatgtaaaagatccctgtaagttgacgcgttttttgttttagttcctgtatc 16288974  T

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Target: chr2; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 34591724 - 34591784
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||||||||| |||| |||||||| | || ||||| ||||| |||| ||||||    
T  34591724 aggcttaaatatgtaaatcgtccatgtaagtttgtgtattttttgttttcgtccttgtatc 34591784  T

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Target: chr2; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 42827319 - 42827363
Alignment:
Q  49 cttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttt 93  Q
    |||||||||||||| ||| ||||||||||||||  ||||||||||    
T  42827319 cttaaatatgtaaacggttcttgtaagttcgcgcatttttggttt 42827363  T

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Target: scaffold1118 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 2420 - 2526
Alignment:
Q  55 tatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatcnnnnnnnattctaaaacaacccctgtaagttataagcattttggtttt 154  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||| ||||       ||| ||||||||||||||||||||||| || ||||||||||    
T  2420 tatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctatatctttttttattttaaaacaacccctgtaagttatacgcgttttggtttt 2519  T
Q  155 agtccct 161  Q
    |||||||    
T  2520 agtccct 2526  T

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Target: scaffold0288 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 118 - 281
Target Start/End: Original strand, 19543 - 19705
Alignment:
Q  118 taaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatgacatggcga 217  Q
    |||||||| || ||||||||||||  | ||||||||| |||  |||||||| ||||| ||||||||||||||||||||||||  |||||||||||||| |    
T  19543 taaaacaaaccttgtaagttataat-agtttggttttggtcattgccgtcacaatctattacaaaaacgtctatgtggcaaatagaggatgacatggcaa 19641  T
Q  218 cgtgtgacgtggtagatgtcgctgatgtagcattccatatgctgagtcacaaatttagagggac 281  Q
    |||||||| | | | | | || ||| ||  | ||||||||||||||||||||| ||||| ||||    
T  19642 cgtgtgacattgcatacgacgttgacgtgtcgttccatatgctgagtcacaaagttagaaggac 19705  T

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Target: scaffold0280 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 12130 - 12246
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc-nnnnnnnattctaaaacaacccctgtaagttataagca 144  Q
    ||||||||||||||||| ||| |  |||||||||||||||||||||||| |||||||||||         ||||||||||| ||||||||||| | | |     
T  12130 aggcttaaatatgtaaaaggttccggtaagttcgcgtgtttttggttttcgtccctgtatctttttttctttctaaaacaaaccctgtaagttgttaacc 12229  T
Q  145 ttttggttttagtccct 161  Q
    |||||||||||||||||    
T  12230 ttttggttttagtccct 12246  T

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Target: scaffold0672 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 520 - 426
Alignment:
Q  115 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatga 209  Q
    ||||||||||  ||||||||||||||| | |||||||||| |||||  || |||| ||||||| | ||||||| ||||||| ||| |||||||||    
T  520 ttctaaaacagaccctgtaagttataaacgttttggttttggtcccaaccatcatcatctgttgccaaaacgtgtatgtgggaaatggaggatga 426  T

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Target: scaffold0129 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 4317 - 4259
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgta 104  Q
    ||||||||||||||||| ||||| ||||||||||||  ||||||||||| |||||||||    
T  4317 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 4259  T

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Target: scaffold0512 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 10109 - 10023
Alignment:
Q  123 caacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatga 209  Q
    |||||||||||||||||||   ||||| ||||||||| || | |||| ||| ||||||||||||| ||  |||||||| ||||||||    
T  10109 caacccctgtaagttataaatgttttgattttagtccatgtcttcatcatccgttacaaaaacgtatacatggcaaacagaggatga 10023  T

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Target: scaffold0489 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 6875 - 6815
Alignment:
Q  46 aggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtatc 106  Q
    |||||||||||||||||| |||  ||||| || |||||||||||||||| || ||||||||    
T  6875 aggcttaaatatgtaaatcgtctctgtaatttggcgtgtttttggtttttgttcctgtatc 6815  T

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Target: scaffold0633 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 6953 - 6895
Alignment:
Q  47 ggcttaaatatgtaaatggtccttgtaagttcgcgtgtttttggttttagtccctgtat 105  Q
    ||||||||||||||||| |||  ||||| || |||||||||||||||| ||| ||||||    
T  6953 ggcttaaatatgtaaatcgtctctgtaatttggcgtgtttttggttttcgtctctgtat 6895  T

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