View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18844_low_8 (Length: 381)

Name: NF18844_low_8
Description: NF18844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18844_low_8
NF18844_low_8
[»] chr2 (5 HSPs)
chr2 (57-223)||(2599953-2600120)
chr2 (249-363)||(2600109-2600223)
chr2 (57-214)||(2591820-2591976)
chr2 (58-212)||(2603105-2603259)
chr2 (8-60)||(2584492-2584544)
[»] chr3 (7 HSPs)
chr3 (57-207)||(21642233-21642383)
chr3 (58-167)||(26314397-26314506)
chr3 (58-167)||(28566505-28566614)
chr3 (58-167)||(28573250-28573359)
chr3 (58-167)||(28584480-28584589)
chr3 (57-167)||(20615170-20615280)
chr3 (257-296)||(24916936-24916975)
[»] chr6 (3 HSPs)
chr6 (57-207)||(30399717-30399867)
chr6 (58-167)||(24069942-24070051)
chr6 (58-167)||(24080685-24080794)
[»] scaffold0927 (1 HSPs)
scaffold0927 (58-167)||(339-448)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 2599953 - 2600120
Alignment:
Q  57 atcatatctt-gattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtct 155  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2599953 atcatatctttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtct 2600052  T
Q  156 caaacaagaaatcatgactccaaattcaatatttccatcatcttttaccaaattttgtcaagtaatag 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2600053 caaacaagaaatcatgactccaaattcaatatttccatcatcttttaccaaattttgtcaagtaatag 2600120  T

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Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 249 - 363
Target Start/End: Original strand, 2600109 - 2600223
Alignment:
Q  249 gtcaagtaatagttttaagagttcatcaaaatggaaatcttctcaatcctctcatcagcattatcttgcacttcaagtaatcaacttggaatgtgaaacc 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2600109 gtcaagtaatagttttaagagttcatcaaaatggaaatcttctcaatcctctcatcagcattatcttgcacttcaagtaatcaacttggaatgtgaaacc 2600208  T
Q  349 aacataacaaaagtc 363  Q
    |||||||||||||||    
T  2600209 aacataacaaaagtc 2600223  T

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Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 2591820 - 2591976
Alignment:
Q  57 atcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctc 156  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||     
T  2591820 atcatatcttgattgttacatgaatgaacaccaaaatattacaactgaagagacacaaaggcatgttgctcatatgatttcaaatgaatggaaacgtctg 2591919  T
Q  157 aaacaagaaatcatgactccaaattcaatatttccatcatcttttaccaaattttgtc 214  Q
    || |||| |||||| |||||||||  ||||||||||||||||||||||||||||||||    
T  2591920 aatcaag-aatcataactccaaataaaatatttccatcatcttttaccaaattttgtc 2591976  T

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Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 2603105 - 2603259
Alignment:
Q  58 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctca 157  Q
    |||||||| ||||| |||||||||||||||||||| | | || || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2603105 tcatatctagattgctacatgaatgaacaccaagagatttcagctcaagaggcacaaagacatgttgctaacatgatttcaaatgaatggaaacgtctca 2603204  T
Q  158 aacaagaaatcatgactccaaattcaatatttccatcatcttttaccaaattttg 212  Q
    | ||||||||||| || || ||| |||| ||| | ||||| ||||||||||||||    
T  2603205 atcaagaaatcataaccccgaatccaattttttcgtcatcatttaccaaattttg 2603259  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 2584492 - 2584544
Alignment:
Q  8 tgcaatggattgttatgtttgctcggattataatgattctccatttgttatca 60  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2584492 tgcaatggattgttatgtttgctctgattataatgattctccatttgttatca 2584544  T

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Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 21642383 - 21642233
Alignment:
Q  57 atcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| || |    
T  21642383 atcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacaaaatttcaattgaatggaaacatcac 21642284  T
Q  157 aaacaagaaatcatgactccaaattcaatatttccatcatcttttaccaaa 207  Q
    || ||| ||||||| ||||||||| ||||||| ||||||||||||||||||    
T  21642283 aatcaataaatcataactccaaatgcaatattcccatcatcttttaccaaa 21642233  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 26314506 - 26314397
Alignment:
Q  58 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctca 157  Q
    |||||||||||||| ||||||| |||||||||||||| | |   |||||| |  ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  26314506 tcatatcttgattgctacatgagtgaacaccaagatatttccggtgaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaacgtctca 26314407  T
Q  158 aacaagaaat 167  Q
    | ||||||||    
T  26314406 atcaagaaat 26314397  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 28566614 - 28566505
Alignment:
Q  58 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctca 157  Q
    ||||| |||||||| ||||||| |||||||||||||| | | | |||||| |  ||| | ||||||||| ||||||||||||||||||||||| ||||||    
T  28566614 tcataccttgattgctacatgagtgaacaccaagatatttccagtgaagacgtgcaacgacatgttgctcacatgatttcaaatgaatggaaatgtctca 28566515  T
Q  158 aacaagaaat 167  Q
    | ||||||||    
T  28566514 atcaagaaat 28566505  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 28573359 - 28573250
Alignment:
Q  58 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctca 157  Q
    ||||| |||||||| ||||||| |||||||||||||| | |   |||||| |  ||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  28573359 tcataccttgattgctacatgagtgaacaccaagatatttccggtgaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaatgtctca 28573260  T
Q  158 aacaagaaat 167  Q
    | ||||||||    
T  28573259 atcaagaaat 28573250  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 28584589 - 28584480
Alignment:
Q  58 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctca 157  Q
    ||||| |||||||| ||||||| |||||||||||||| | | | |||||| |  ||| | ||||||||| |||||||||||||||||||||||  |||||    
T  28584589 tcataccttgattgctacatgagtgaacaccaagatatttccagtgaagacgtgcaaggacatgttgctcacatgatttcaaatgaatggaaatttctca 28584490  T
Q  158 aacaagaaat 167  Q
    | ||||||||    
T  28584489 atcaagaaat 28584480  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 20615280 - 20615170
Alignment:
Q  57 atcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctc 156  Q
    |||||||||| |||| ||||||| ||| |||||||||| | ||  |||||| |  ||||| ||||||||| | ||||||| ||||||||||||| ||||     
T  20615280 atcatatcttaattgctacatgagtgagcaccaagatatttcatgtgaagatgtgcaaagacatgttgctgagatgattttaaatgaatggaaatgtcta 20615181  T
Q  157 aaacaagaaat 167  Q
    || ||||||||    
T  20615180 aatcaagaaat 20615170  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 24916975 - 24916936
Alignment:
Q  257 atagttttaagagttcatcaaaatggaaatcttctcaatc 296  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  24916975 atagttctaagagttcatcaaaatggaaatcttctcaatc 24916936  T

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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 57 - 207
Target Start/End: Original strand, 30399717 - 30399867
Alignment:
Q  57 atcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctc 156  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| || ||||||||||| || |    
T  30399717 atcatatcttgattattacatgaatgaacaccaagatagtacaactgaataggcacaaagggatgtttctaacatgatttaaattgaatggaaacatcac 30399816  T
Q  157 aaacaagaaatcatgactccaaattcaatatttccatcatcttttaccaaa 207  Q
    || ||| ||||||| ||||||||| |||||||  ||| |||||||||||||    
T  30399817 aatcaataaatcataactccaaatgcaatattctcataatcttttaccaaa 30399867  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 24070051 - 24069942
Alignment:
Q  58 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctca 157  Q
    |||||||||||||| | || || |||||||||||||| | |    |||||||  ||||| |||||||||  |||||||||||||||||||||| ||||||    
T  24070051 tcatatcttgattgcttcaagagtgaacaccaagatatttccggcgaagaggtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctca 24069952  T
Q  158 aacaagaaat 167  Q
    | ||||||||    
T  24069951 atcaagaaat 24069942  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 24080685 - 24080794
Alignment:
Q  58 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctca 157  Q
    |||||||||||||| | ||||| |||||||||||||| | |    ||||| |  ||||| |||||||||  |||||||||||||||||||||| ||||||    
T  24080685 tcatatcttgattgcttcatgagtgaacaccaagatatttccggggaagacgtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctca 24080784  T
Q  158 aacaagaaat 167  Q
    | ||||||||    
T  24080785 atcaagaaat 24080794  T

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Target: scaffold0927 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 339 - 448
Alignment:
Q  58 tcatatcttgattgttacatgaatgaacaccaagatagtacaactgaagaggcacaaaggcatgttgctaacatgatttcaaatgaatggaaacgtctca 157  Q
    |||||||||||||| ||||||| |||||| || |||| | | | |||||| |  ||||  ||||||||| ||||||||||||||||||||||| ||||||    
T  339 tcatatcttgattgctacatgagtgaacatcaggatatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctca 438  T
Q  158 aacaagaaat 167  Q
    | ||||||||    
T  439 atcaagaaat 448  T

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