View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18845_high_15 (Length: 268)
Name: NF18845_high_15
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18845_high_15 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 37973169 - 37972914
Alignment:
| Q |
13 |
aaaataacaaattcaatgtgttatcactacgttgacactctttaaacaacaattcatttaatctgaatggtagatgataagtgtactttctcagtttctc |
112 |
Q |
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| T |
37973169 |
aaaataacaaattcaatgtgttatcactacgttgacactctttaaacaacaattcatttaatctgaatggtagatgataagtgtacgttttcagtttctc |
37973070 |
T |
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| Q |
113 |
atatacatatttccacattttcataatcactcttttctaatttttatatatcttcaatcgtgcgtgtttcgttatttcaaatcaacaatttacacataac |
212 |
Q |
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| T |
37973069 |
atatacatatttccacattttcataattactcttttctaatttttatatatcttcaatcgtgcgtgtttctttatttcaaatcaacaatttacacataac |
37972970 |
T |
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| Q |
213 |
catacaaaaatggacatgcaaatgttgataaaatagctattatgttaatatttttc |
268 |
Q |
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| T |
37972969 |
catacaaaagtggacatgcaaatgttgataagatggctattatgttaatatttttc |
37972914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 37972867 - 37972798
Alignment:
| Q |
199 |
aatttacacataaccatacaaaaatggacatgcaaatgttgataaaatagctattatgttaatatttttc |
268 |
Q |
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| T |
37972867 |
aatttacgcataaccaaacaaaagtggacatgcaaatgttgataagatagctattatgttaatatttttc |
37972798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 37972751 - 37972679
Alignment:
| Q |
199 |
aatttacacataaccatacaaaaatggacatgcaaatgttg---ataaaatagctattatgttaatatttttc |
268 |
Q |
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| T |
37972751 |
aatttacgcataaccaaacaaaagtgaacatgcaaatgttgttgataagatagctattatgttaatatttttc |
37972679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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