View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18845_high_16 (Length: 267)
Name: NF18845_high_16
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18845_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 22037089 - 22037327
Alignment:
| Q |
11 |
agaatatgttgaccaaagtcatattataaacttgaagcagacacacatatgtttacccgatgaagaaattatgatgcaaagggaatagtgggaatttgaa |
110 |
Q |
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| T |
22037089 |
agaaaatgttgaccaaagtcatattataaacttgaagaagacacacatatgtttacccggcgaagaaattatgatgcaaagggaatagtggaaatttgaa |
22037188 |
T |
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| Q |
111 |
atgaacaatctgagatctataaacaacacccgtaaacac-aaaaaacattcaaatacaatagtattgttctatgtacctacttctttgtagattttatca |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22037189 |
atgaacaatctgagatgtataaacaacacccgtaaacacaaaaaaacattcaaatacaatagtattgttctatgtacctacttctttgtagattttatca |
22037288 |
T |
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| Q |
210 |
atgcacttgcgatattattcattcttggttattttctct |
248 |
Q |
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| T |
22037289 |
atgcacttgtgatattattcattcttggttattttctct |
22037327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 22046568 - 22046654
Alignment:
| Q |
162 |
aatacaatagtattgttctatgtacctacttctttgtagattttatcaatgcacttgcgatattattcattcttggttattttctct |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22046568 |
aatacaatagtattgttctatgtacctacttctttgtagattttatcaatgcacttgtgatattattcattcttggttattttctct |
22046654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 44310432 - 44310504
Alignment:
| Q |
18 |
gttgaccaaagtcatattataaacttgaagcagacacacatatgtttacccgatgaagaaattatgatgcaaa |
90 |
Q |
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| T |
44310432 |
gttgacgaaagtcatcttataaacttgaagctgacacacatatctttacccagtgaagaacttatgatgcaaa |
44310504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 44310588 - 44310647
Alignment:
| Q |
150 |
aaaaaacattcaaatacaatagtattgttctatgtacctacttctttgtagattttatca |
209 |
Q |
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|||||||||||||||| ||||||||||| |||||| || ||||||||||||| ||||| |
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| T |
44310588 |
aaaaaacattcaaatattgtagtattgttcaatgtacttatttctttgtagattgtatca |
44310647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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