View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18845_high_2 (Length: 635)
Name: NF18845_high_2
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18845_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 17 - 620
Target Start/End: Original strand, 2332365 - 2332968
Alignment:
| Q |
17 |
ttctcaataacaatattcatagatgtagagttagtttgtcaacttgaattaatcatcatcaattaccgcatcaatcatctattagttatatttgaaatag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
2332365 |
ttctcaataacaatattcatagatgtagagttagtttgtcaacttgaattaatcatcatcaattaccgcatcaaccatctattagttctatttgaaatag |
2332464 |
T |
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| Q |
117 |
taatttgtgtttcttctactctctacaagtccttcttaagttcattttttcttagtcatatcttacaagtctactaaaaagaactatgacactcaacaca |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332465 |
taatttgtgtttcttctactctctacaagtcctacttaagttcattttttcttagtcatatcttacaagtctactaaaaagaactatgacactcaacaca |
2332564 |
T |
|
| Q |
217 |
ttgagaacttgaacaatttcacatttgatatgatagtttctannnnnnnaatacttacaaagtatcctaaagaagtaaagatacatactcatagtatctg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332565 |
ttgagaacttgaacaatttcacatttgatatgatagtttctatttttttaatacttacaaagtatcctaaagaagtaaagatacatactcatagtatctg |
2332664 |
T |
|
| Q |
317 |
actgactatttgtcatttccatgtctttatttgcatcagatagatatcgagttcatgcaaatttgaaaacgtttattttgcatggaccttatgtttgtat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332665 |
actgactatttgtcatttccatgtctttatttgcatcagatagatatcgagttcatgcaaatttgaaaacgtttattttgcatggaccttatgtttgtat |
2332764 |
T |
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| Q |
417 |
attgtttaatgcaaatattgtggaggccaaagtgaacttcttatgccaggcttcatatgtattaaacatgtcttcattggttcaatttcatgttattatc |
516 |
Q |
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| T |
2332765 |
attgtttaatgcaaatattgtggaggccaaagtgaacttcttatgccaggcttcatatgtattaaacatgtcttcattggttcaatttcatgttattatc |
2332864 |
T |
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| Q |
517 |
tatattgcatacgaattgccaaatttgtttgactaagaatatcataatctatagagctaagtttggttatttactcataactccggttgtttttgtgttg |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332865 |
tatattgcatacgaattgccaaatttgtttgactaagaatatcataatctatagagctaagtttggttatttactcataactccggttgtttttgtgttg |
2332964 |
T |
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| Q |
617 |
gtga |
620 |
Q |
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|||| |
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| T |
2332965 |
gtga |
2332968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 2295029 - 2295085
Alignment:
| Q |
404 |
cttatgtttgtatattgtttaatgcaaatattgtggaggccaaagtgaacttcttat |
460 |
Q |
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| T |
2295029 |
cttatggttgtatagtgtgatatgcaaatattgtggaggccaaattgaacttcttat |
2295085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 2322203 - 2322268
Alignment:
| Q |
17 |
ttctcaataacaatattcatagatgtagagttagtttgtcaacttgaattaatcatcatcaattac |
82 |
Q |
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|||| |||||||| || || || | ||||| |||||||||||| ||| |||||||||||||||||| |
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| T |
2322203 |
ttcttaataacaagatccacagttttagagctagtttgtcaacctgagttaatcatcatcaattac |
2322268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 2310839 - 2310895
Alignment:
| Q |
404 |
cttatgtttgtatattgtttaatgcaaatattgtggaggccaaagtgaacttcttat |
460 |
Q |
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|||||| ||||||| ||| ||||||| ||||||||||||||| |||||||||||| |
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| T |
2310839 |
cttatggttgtatagtgtgatatgcaaagattgtggaggccaaattgaacttcttat |
2310895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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