View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18845_high_6 (Length: 450)
Name: NF18845_high_6
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18845_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 433
Target Start/End: Original strand, 40784860 - 40785282
Alignment:
| Q |
10 |
gaagaatatgggtaattcatttgtttaaataagtatctataatgttactgattttgctgacaatattgataacgtttttgatatatttttcataaaataa |
109 |
Q |
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| T |
40784860 |
gaagaaaatggttaattcatttgtttaaataagtatctataatgttattgattttgctgacaatattgataacgtttttgatatatttttcataaaataa |
40784959 |
T |
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| Q |
110 |
attaacaagttggtttgcaagtagcatctcttatccaaattgggttaaattttgtgatattattatgatcaatttggtaaataaaatatatatggagaac |
209 |
Q |
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| T |
40784960 |
gttaacaagttggtttgcaagtagcatctcttatccaaattgggttaaattttgtgatattattatgatcaatttggtaaataaaatatatatggagaac |
40785059 |
T |
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| Q |
210 |
tatttttatcaatcaacagcctagctatccacctgctcgtatcatatcaggtaggcactcacaaataattgacctcaagtattagcttgtttccttctac |
309 |
Q |
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| T |
40785060 |
tatttttatgaatcaacagcctagctatccacctgctcatatcatatcaggtaggcactcacaaataattgacctcaagta-tagcttgtttccttctac |
40785158 |
T |
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| Q |
310 |
aatccataattccacctgaatacaatctcttttaacaatgatttgtttgttgattgccacttacctttatactggatatataagctttgatcatgatata |
409 |
Q |
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| T |
40785159 |
aatccataattccacctgaatacaatctcttttaacaatgatttgtttgttgattgccacttacctttatactggatatataagctttgatcatgatata |
40785258 |
T |
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| Q |
410 |
attagttcaattgattcaaccata |
433 |
Q |
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| T |
40785259 |
attaattcaattgattcaaccata |
40785282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 40792294 - 40792432
Alignment:
| Q |
99 |
tcataaaataaattaacaagttggtttgcaagtagca--tctcttatccaaattgggttaaattttgtgatattat--tatgatcaatttggtaaataaa |
194 |
Q |
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| T |
40792294 |
tcataaaataaattaacaagttggtttgcaagtagcaattcttatatccaaatttagttaaattttgtgatatcattatatcatcaatttggt-aatagt |
40792392 |
T |
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| Q |
195 |
atatatatggagaactatttttatcaatcaacagcctagc |
234 |
Q |
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| T |
40792393 |
atatatatgtagaactatttctaccaatcaacagcctagc |
40792432 |
T |
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