View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18845_high_8 (Length: 362)
Name: NF18845_high_8
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18845_high_8 |
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| [»] chr3 (8 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 220 - 362
Target Start/End: Complemental strand, 3719685 - 3719540
Alignment:
| Q |
220 |
caaaaattgcaaaaagaaacatcaaaa--gatggagctcagaggtatgtttttcatccaatgtttcaggaggaatgatgtttaccg-aacaccacaaatg |
316 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
3719685 |
caaaaattgcaaaaagaaacatcaaaaaagatggagctcagaggtatgtttttcatcctatgtttcaggaggaatgatgtttaccgaaacacaacaaatg |
3719586 |
T |
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| Q |
317 |
ttttcatcacagctccctcaaaattgcaccagccgggaatcgaacc |
362 |
Q |
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| T |
3719585 |
ttttcatcatagctccctgcaaattgcaccagccgggaatcgaacc |
3719540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 251 - 362
Target Start/End: Complemental strand, 3705581 - 3705471
Alignment:
| Q |
251 |
gagctcagaggtatgtttttcatccaatgtttcaggaggaatgatgtttaccgaacaccacaaatgttttcatcacagctccctcaaaattgcaccagcc |
350 |
Q |
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| T |
3705581 |
gagctcagaggtattattttcatccaatgtttcaggagaagtgatgtt-accgaacaacacatatattatcatcatagctccctcaaaattgcaccagcc |
3705483 |
T |
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| Q |
351 |
gggaatcgaacc |
362 |
Q |
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|||||||||||| |
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| T |
3705482 |
gggaatcgaacc |
3705471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 3701832 - 3701721
Alignment:
| Q |
250 |
ggagctcagaggtatgtttttcatccaatgtttcaggaggaatgatgtttaccgaacaccacaaatgttttcatcacagctccctcaaaattgcaccagc |
349 |
Q |
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| T |
3701832 |
ggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgtt-accgaacaccacagatattatcatcatagctccctcaaatttgcaccagc |
3701734 |
T |
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| Q |
350 |
cgggaatcgaacc |
362 |
Q |
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||||||||||||| |
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| T |
3701733 |
cgggaatcgaacc |
3701721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 362
Target Start/End: Complemental strand, 3713161 - 3713021
Alignment:
| Q |
222 |
aaaattgcaaaaa-gaaacatcaaaagatggagctcagaggtatgtttttcatccaatgtttcaggaggaatgatgtttaccgaacaccacaaatgtttt |
320 |
Q |
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||||||||||||| |||| || |||||| ||||||||||| || |||||||||||||||||||||| | ||||||| ||||||||||||| || || | |
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| T |
3713161 |
aaaattgcaaaaaagaaaaataaaaagaaagagctcagaggcattattttcatccaatgtttcaggagaagtgatgtt-accgaacaccacagatattat |
3713063 |
T |
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| Q |
321 |
catcacagctccctcaaaattgcaccagccgggaatcgaacc |
362 |
Q |
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||||| ||||||||| || |||||||||||||||||||||| |
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| T |
3713062 |
catcatagctccctcgaatatgcaccagccgggaatcgaacc |
3713021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 3721092 - 3721035
Alignment:
| Q |
18 |
gttctttctaaatgtccttagttttctcccattttcattcattatctcacttcactgt |
75 |
Q |
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| T |
3721092 |
gttctttctaaatgtccttagttttctcccattttcattcattatctcacttcactgt |
3721035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 3719900 - 3719838
Alignment:
| Q |
78 |
atagtcacgcgttgaataaacaccattgacaattggcattaactacaacaaaaacttccataa |
140 |
Q |
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| T |
3719900 |
atagtcacgcgttgaataaacaccattgacaattggcattaaccccaacaaaaacttccataa |
3719838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 3719798 - 3719753
Alignment:
| Q |
134 |
tccataaatctctgcaaagcagtataagttttaccactattggtac |
179 |
Q |
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| T |
3719798 |
tccataaatctctgcaaagcagtataagttttaccactattggtac |
3719753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 3708088 - 3707980
Alignment:
| Q |
250 |
ggagctcagaggtatgtttttcatccaatgtttcaggaggaatgatgtttaccgaacaccacaaatgttttcatcacagctccctcaaaattgcaccagc |
349 |
Q |
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||||||||||||||| ||||||||| ||| ||||||| | ||||| ||| |||| ||||||| ||||||||||||| || || ||||||||||| |
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| T |
3708088 |
ggagctcagaggtattattttcatccgatgattcaggaaaggtaatgtt-accaaacatcacaaatattttcatcacagcccc---aatattgcaccagc |
3707993 |
T |
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| Q |
350 |
cgggaatcgaacc |
362 |
Q |
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| T |
3707992 |
cgggaatcgaacc |
3707980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 38327932 - 38327824
Alignment:
| Q |
252 |
agctcagaggtatgttttt-catccaatgtttcaggaggaatgatgtttaccgaacaccacaaatgttttcatcacagctccctcaaaattgcaccagcc |
350 |
Q |
| |
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||||||||||||| ||||| |||||| ||||||||| ||||| ||||| |||||||||||| |||||||||||||| || | || |||||||||| |
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| T |
38327932 |
agctcagaggtatattttttcatccagtgtttcagggaaggtgatg-ttacccaacaccacaaatattttcatcacagct--ctaagaaatgcaccagcc |
38327836 |
T |
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| Q |
351 |
gggaatcgaacc |
362 |
Q |
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|||||||||||| |
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| T |
38327835 |
gggaatcgaacc |
38327824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 38322713 - 38322652
Alignment:
| Q |
299 |
taccgaacaccacaaatgttttcatcacagctccctcaaaattgcaccagccgggaatcgaacc |
362 |
Q |
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|||| |||||||||| | ||||||||||||||| ||| || |||||||||||||||||||||| |
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| T |
38322713 |
tacccaacaccacaactattttcatcacagctc--tcagaaatgcaccagccgggaatcgaacc |
38322652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 362
Target Start/End: Original strand, 12483001 - 12483120
Alignment:
| Q |
243 |
aaaagatggagctcagaggtatgtttttcatccaatgtttcaggaggaatgatgtttaccgaacaccacaaatgttttcatcacagctccctcaaaa-tt |
341 |
Q |
| |
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|||||| ||||||||| ||||| | | ||||||| | |||||||| | ||||||| ||| |||| |||| |||| |||||| |||||| || || || |
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| T |
12483001 |
aaaagaaggagctcaggggtatatatgtcatccagtatttcaggataagtgatgtt-acctaacatcacagatgtcatcatcatagctccatctgaagtt |
12483099 |
T |
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| Q |
342 |
gcaccagccgggaatcgaacc |
362 |
Q |
| |
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||||||||||||||||||||| |
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| T |
12483100 |
gcaccagccgggaatcgaacc |
12483120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 3521017 - 3521057
Alignment:
| Q |
134 |
tccataaatctctgcaaagcagtataagttttaccactatt |
174 |
Q |
| |
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|||||||| |||||||||||| ||||||| ||||||||||| |
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| T |
3521017 |
tccataaacctctgcaaagcattataagtcttaccactatt |
3521057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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