View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18845_low_1 (Length: 705)

Name: NF18845_low_1
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18845_low_1
NF18845_low_1
[»] chr2 (8 HSPs)
chr2 (14-615)||(7127525-7128131)
chr2 (392-522)||(7133173-7133303)
chr2 (230-310)||(7124060-7124141)
chr2 (621-684)||(7128164-7128224)
chr2 (312-397)||(7124614-7124697)
chr2 (622-682)||(7133490-7133547)
chr2 (312-385)||(7133078-7133151)
chr2 (140-172)||(33390660-33390692)
[»] chr4 (1 HSPs)
chr4 (102-162)||(41364965-41365026)
[»] chr7 (1 HSPs)
chr7 (106-163)||(739259-739316)
[»] chr6 (1 HSPs)
chr6 (102-158)||(431028-431085)
[»] chr5 (1 HSPs)
chr5 (19-82)||(42273387-42273449)
[»] chr8 (2 HSPs)
chr8 (105-162)||(29749271-29749329)
chr8 (105-138)||(32616835-32616868)
[»] chr1 (1 HSPs)
chr1 (103-158)||(7210679-7210735)


Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 14 - 615
Target Start/End: Original strand, 7127525 - 7128131
Alignment:
Q  14 aatatttcaatcaaacttaaatcattttttgaaaacacttcgtagcttgcttaatttagaaaagaaaaataatcctgcacctcccctcatattgttaaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127525 aatatttcaatcaaacttaaatcattttttgaaaacacttcgtagcttgcttaatttagaaaagaaaaataatcctgcacctcccctcatattgttaaat 7127624  T
Q  114 agcgcctatagcagcgctatagcatgttgcatagcagaatttgaacaaatcgttattgtcctacaatagtgctgggcagagtccatcgcagcaacatctg 213  Q
    |||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7127625 agcgcctat-----------agcatgttgcatagcagaatttgaacaaatcgttattgtcctacaatagtgctgggcagagtccattgcagcaacatctg 7127713  T
Q  214 tgtgtttatttcgattctgcaacaaatcagaaaagtcacagcctgcttagaatcctttgctagttcgcgaatccaaaaccatggtgccgatgctctaaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127714 tgtgtttatttcgattctgcaacaaatcagaaaagtcacagcctgcttagaatcctttgctagttcgcgaatccaaaaccatggtgccgatgctctaaaa 7127813  T
Q  314 tggacttgatacagagcttaacttcttccgggaggcaattcaaacgatcctctagccaacaacaatcaatatctaat----------------agccact 397  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||    
T  7127814 tggacttgatacggagcttaacttcttccgggaggcaattcaaacgatcctctagccaacaacaatcaatatctaatagccactttcgtatacagccact 7127913  T
Q  398 caatcggaatattgtcaaccaattctgcaatacataaagtttcactatccaacaaccacttcaagagttagcagttaaaccatcaccaatagaccaataa 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7127914 caatcggaatattgtcaaccaattctgcaatacataaagtttcactatccaacaaccacttcaagagttagcagttaaaccatcaccaatagaccaataa 7128013  T
Q  498 gatgtaagattcctctctattttccccttcaaagcccttccttccctccccgcctaacttccaaataaaacctagacgtaagctataaggtgaattaata 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7128014 gatgtaagattcctctctattttccccttcaaagcccttccttccctccccgcctaacttccaaataaaacctagacgtaagctataaggtgaattaata 7128113  T
Q  598 tgttaagtgagctagttc 615  Q
    ||||||||||||||||||    
T  7128114 tgttaagtgagctagttc 7128131  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 392 - 522
Target Start/End: Original strand, 7133173 - 7133303
Alignment:
Q  392 gccactcaatcggaatattgtcaaccaattctgcaatacataaagtttcacta-tccaacaaccacttcaagagttagcagttaaaccatcaccaataga 490  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||| ||| ||| |||| ||||||| |||||||||||||||||||    
T  7133173 gccactcaatcagaatattgtcaaccacttctgcaatacataaa-tttcactactccaaaaactactccaagcgttagcatttaaaccatcaccaataga 7133271  T
Q  491 ccaataagatgtaagattcctctctattttcc 522  Q
    | ||||||||| |||||| |||||||||||||    
T  7133272 caaataagatgaaagatttctctctattttcc 7133303  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 7124060 - 7124141
Alignment:
Q  230 ctgcaacaaatcagaaaa-gtcacagcctgcttagaatcctttgctagttcgcgaatccaaaaccatggtgccgatgctcta 310  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| ||||    
T  7124060 ctgcagcaaatcagaaaaagtcacagcctgcttagaatcctttgctagtttgcgaacccaaaaccaaggcgccgatggtcta 7124141  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 621 - 684
Target Start/End: Original strand, 7128164 - 7128224
Alignment:
Q  621 gttgtatttattgctgcctttgaaagaagatgttttcactacttcatcaaggtgggttgagatg 684  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  7128164 gttgtatttattgctgcctttgaaagaagatgttttc---acttcatcaaggtgggttgagatg 7128224  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 7124614 - 7124697
Alignment:
Q  312 aatggacttgatacagagcttaacttcttccgggaggcaattcaaacgatcctctagccaacaacaatcaatatctaatagccact 397  Q
    ||||||| |||||  |||||| ||||| ||||| || |||||||||||||||| ||||||||||| |||||||||| |||||||||    
T  7124614 aatggacctgatatggagcttcacttcctccgg-agccaattcaaacgatcctttagccaacaaccatcaatatct-atagccact 7124697  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 682
Target Start/End: Original strand, 7133490 - 7133547
Alignment:
Q  622 ttgtatttattgctgcctttgaaagaagatgttttcactacttcatcaaggtgggttgaga 682  Q
    ||||||||| |||||||||||| |||||||||||||||    | |||||||||||||||||    
T  7133490 ttgtatttactgctgcctttgacagaagatgttttcaca---tgatcaaggtgggttgaga 7133547  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 7133078 - 7133151
Alignment:
Q  312 aatggacttgatacagagcttaacttcttccgggaggcaattcaaacgatcctctagccaacaacaatcaatat 385  Q
    ||||||| |||| | |||||||||||| ||| | || ||||||||| ||||||||||| |||||| || |||||    
T  7133078 aatggacctgatgccgagcttaacttcctccagaagccaattcaaatgatcctctagctaacaaccatgaatat 7133151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 33390692 - 33390660
Alignment:
Q  140 ttgcatagcagaatttgaacaaatcgttattgt 172  Q
    |||||||||||||||||||||||||| ||||||    
T  33390692 ttgcatagcagaatttgaacaaatcgctattgt 33390660  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 41364965 - 41365026
Alignment:
Q  102 atattgttaaatagcgcctatagcagcgctatagca-tgttgcatagcagaatttgaacaaa 162  Q
    ||||||| |||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||    
T  41364965 atattgtgaaatagcgtctataacagcgctatagcactgttgcgtagcagaatttgaacaaa 41365026  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 739316 - 739259
Alignment:
Q  106 tgttaaatagcgcctatagcagcgctatagcatgttgcatagcagaatttgaacaaat 163  Q
    |||||||||||||||||| |||||||||||| | ||||||||  |||||| |||||||    
T  739316 tgttaaatagcgcctataacagcgctatagcctattgcatagttgaatttaaacaaat 739259  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 431028 - 431085
Alignment:
Q  102 atattgttaaatagcgcctatagcagcgctatagca-tgttgcatagcagaatttgaa 158  Q
    |||||||||||||||| ||||||  ||||||||||| |||||| ||||||||||||||    
T  431028 atattgttaaatagcggctatagatgcgctatagcactgttgcgtagcagaatttgaa 431085  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 42273449 - 42273387
Alignment:
Q  19 ttcaatcaaacttaaatcattttttgaaaacacttcgtagcttgcttaatttagaaaagaaaaa 82  Q
    |||||||| |||| | |||||||| |||| || || ||||||||||||||||||||||||||||    
T  42273449 ttcaatcacacttcattcatttttagaaa-cattttgtagcttgcttaatttagaaaagaaaaa 42273387  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 29749271 - 29749329
Alignment:
Q  105 ttgttaaatagcgcctatagcagcgctatagca-tgttgcatagcagaatttgaacaaa 162  Q
    ||||||||||||   |||||||||||||||||| ||| |||||||| ||||||||||||    
T  29749271 ttgttaaatagcagttatagcagcgctatagcactgtagcatagcaaaatttgaacaaa 29749329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 32616868 - 32616835
Alignment:
Q  105 ttgttaaatagcgcctatagcagcgctatagcat 138  Q
    ||||||||||||| ||||||||||||||||||||    
T  32616868 ttgttaaatagcggctatagcagcgctatagcat 32616835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 7210735 - 7210679
Alignment:
Q  103 tattgttaaatagcgcctatagcagcgctatagc-atgttgcatagcagaatttgaa 158  Q
    ||||||||||||||| || |||||||| ||||||  ||||||||||| |||||||||    
T  7210735 tattgttaaatagcggctgtagcagcggtatagcgctgttgcatagcggaatttgaa 7210679  T

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