View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18845_low_10 (Length: 336)

Name: NF18845_low_10
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18845_low_10
NF18845_low_10
[»] chr7 (6 HSPs)
chr7 (19-332)||(27597503-27597816)
chr7 (207-310)||(27597976-27598081)
chr7 (208-278)||(36675185-36675256)
chr7 (212-310)||(21416493-21416593)
chr7 (206-281)||(28445224-28445299)
chr7 (234-279)||(23578098-23578143)
[»] chr5 (6 HSPs)
chr5 (208-310)||(13112529-13112633)
chr5 (208-310)||(13042531-13042635)
chr5 (208-279)||(13042988-13043060)
chr5 (208-279)||(13112984-13113056)
chr5 (208-281)||(13042704-13042778)
chr5 (208-281)||(13112702-13112776)
[»] chr2 (3 HSPs)
chr2 (208-309)||(28226329-28226432)
chr2 (208-279)||(13792588-13792660)
chr2 (208-279)||(28226647-28226719)
[»] chr3 (8 HSPs)
chr3 (208-309)||(29795941-29796042)
chr3 (208-310)||(16143430-16143534)
chr3 (208-310)||(53595952-53596056)
chr3 (208-310)||(53596267-53596371)
chr3 (213-279)||(43978669-43978736)
chr3 (211-279)||(40195914-40195983)
chr3 (212-279)||(23162181-23162249)
chr3 (208-279)||(48127909-48127981)
[»] chr6 (3 HSPs)
chr6 (208-276)||(7301397-7301466)
chr6 (208-310)||(11637783-11637887)
chr6 (208-279)||(7301678-7301750)
[»] chr8 (4 HSPs)
chr8 (209-279)||(5981536-5981607)
chr8 (218-279)||(2954319-2954381)
chr8 (237-278)||(3670894-3670935)
chr8 (218-281)||(2954600-2954664)
[»] chr4 (9 HSPs)
chr4 (234-279)||(922437-922482)
chr4 (212-279)||(11307673-11307741)
chr4 (208-310)||(34946467-34946570)
chr4 (208-309)||(10396123-10396226)
chr4 (213-279)||(47680618-47680685)
chr4 (237-279)||(11197248-11197290)
chr4 (208-279)||(10396408-10396480)
chr4 (208-275)||(34946209-34946277)
chr4 (208-310)||(53468060-53468163)
[»] chr1 (4 HSPs)
chr1 (213-282)||(27686615-27686685)
chr1 (211-279)||(4392286-4392355)
chr1 (211-279)||(15327851-15327920)
chr1 (212-279)||(12466279-12466347)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 27597503 - 27597816
Alignment:
Q  19 agatccgactctggctgcatcaatgttagactatggatagtaagtttaagtttaagcgtgcatcattagtgtaaactagttttatgttgatattttcaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27597503 agatccgactctggctgcatcaatgttagactatggatagtaagtttaagtttaagcgtgcatcattagtgtaaactagttttatgttgatattttcaat 27597602  T
Q  119 aaggatctcttaccttcactactccatatcattgatttcaataatannnnnnngaaaaatatcgttaatttcgagatgcagctactaccgttggaaatta 218  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||       |||||||||||||||||||||||||| | ||||||||||||||||||    
T  27597603 aaggatctcttaccttcaccactccatatcattgatatcaataatatttttttgaaaaatatcgttaatttcgagatgcggttactaccgttggaaatta 27597702  T
Q  219 agtgtgagtgatatatcccacatcgactataaatgaagcaaacgttggatatataagagagaaatccataaactcgttgtcttaaggttttgagagatga 318  Q
    |||||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27597703 agtgtgagtgatatattccacatcgattagaaatggagcaaacgttggatatataagagagaaatccataaactcgttgtcttaaggttttgagaggtga 27597802  T
Q  319 tgtccatctcattg 332  Q
    ||||  ||||||||    
T  27597803 tgtctctctcattg 27597816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 27597976 - 27598081
Alignment:
Q  207 cgttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga-gaaatccataaactcgttgtcttaag 304  Q
    |||||||||| |||||||||||||| | || ||||||||||||||||  |||||||||||||||||||||||| || | |||||||| | |||||||| |    
T  27597976 cgttggaaatcaagtgtgagtgataatgtctcacatcgactataaattgagcaaacgttggatatataagagaggagacccataaacccattgtcttagg 27598075  T
Q  305 gttttg 310  Q
    ||||||    
T  27598076 gttttg 27598081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 36675185 - 36675256
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga 278  Q
    |||| |||| || ||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||    
T  36675185 gttgaaaatcaaatgtgagtgataatgtcccacatcgactataaatggagaaaacgttggatatataagaga 36675256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 21416593 - 21416493
Alignment:
Q  212 gaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaa-atccataaactcgttgtcttaaggtttt 309  Q
    ||||| ||||||||||||| || | ||||||| || ||||||| |||||| ||||| |||||||||| | | | ||||||||||||||||||  ||||||    
T  21416593 gaaatcaagtgtgagtgattatgttccacatcaacaataaatggagcaaaagttggttatataagagcggagacccataaactcgttgtctttgggtttt 21416494  T
Q  310 g 310  Q
    |    
T  21416493 g 21416493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 28445299 - 28445224
Alignment:
Q  206 ccgttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagagaa 281  Q
    ||||||||||| || ||||||||||| | |||||||||||||| || || ||||||  |||||||||||||||||||    
T  28445299 ccgttggaaatcaactgtgagtgataatgtcccacatcgactagaa-tggagcaaatattggatatataagagagaa 28445224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 23578143 - 23578098
Alignment:
Q  234 tcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||||| || ||||| || ||||||||||||||||||||||    
T  23578143 tcccacatcgagtagaaatggagaaaacgttggatatataagagag 23578098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 13112529 - 13112633
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga-gaaatccataaactcgttgtcttaagg 305  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||  ||||||| || ||||||||||||| || | |||||||| | |||||||||||    
T  13112529 gttggaaatcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagatatataagagaggagacccataaacccattgtcttaagg 13112628  T
Q  306 ttttg 310  Q
    |||||    
T  13112629 ttttg 13112633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 13042531 - 13042635
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga-gaaatccataaactcgttgtcttaagg 305  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||  ||||||| || ||||||||||||| || | |||||||| | ||| |||||||    
T  13042531 gttggaaatcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagatatataagagaggagacccataaacccattgccttaagg 13042630  T
Q  306 ttttg 310  Q
    |||||    
T  13042631 ttttg 13042635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 13042988 - 13043060
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||| ||| |||||||||| | |||||||||||||| ||||  ||||||| |||||||||||||||||    
T  13042988 gttggaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagag 13043060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 13112984 - 13113056
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||| ||| |||||||||| | |||||||||||||| ||||  ||||||| |||||||||||||||||    
T  13112984 gttggaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagag 13113056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 13042704 - 13042778
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaa 281  Q
    ||||||||| ||||||||||||| || | ||||||| |||| ||||| ||||||| || ||||||||||||||||    
T  13042704 gttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataagagagaa 13042778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 13112702 - 13112776
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaa 281  Q
    ||||||||| ||||||||||||| || | ||||||| |||| ||||| ||||||| || ||||||||||||||||    
T  13112702 gttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataagagagaa 13112776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 28226329 - 28226432
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga-gaaatccataaactcgttgtcttaagg 305  Q
    ||||||||| ||||||||||| || | |||||||||||||| ||||| || ||||||||||||||||||||| || | |||||||| | |||||||| ||    
T  28226329 gttggaaatcaagtgtgagtgttaatgtcccacatcgactagaaatggaggaaacgttggatatataagagaggagacccataaacacattgtcttaggg 28226428  T
Q  306 tttt 309  Q
    ||||    
T  28226429 tttt 28226432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 13792660 - 13792588
Alignment:
Q  208 gttggaaattaagtgtgagtga-tatatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||| |||||||||||| ||| ||||||||| |||| ||||| || |||  || ||||||||||||||    
T  13792660 gttggaaatcaagtgtgagtgattatgtcccacatcaactagaaatggaggaaatatttgatatataagagag 13792588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 28226647 - 28226719
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||| |||||||| ||||| |||| ||||||||| | |||||  |||||  |||||||||||||||||    
T  28226647 gttggaaatcaagtgtgactgataatatcacacatcgacaagaaatggggcaaatattggatatataagagag 28226719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 29795941 - 29796042
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaaatccataaactcgttgtcttaaggt 306  Q
    ||||||||| |||||| |||||| ||||| ||||||||||| |||| ||| ||||||| |||||||||||| || || ||||||||| || |||||||||    
T  29795941 gttggaaatcaagtgttagtgattatatctcacatcgactaaaaataaagaaaacgttagatatataagag-gagattcataaactcattatcttaaggt 29796039  T
Q  307 ttt 309  Q
    |||    
T  29796040 ttt 29796042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 16143430 - 16143534
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga-gaaatccataaactcgttgtcttaagg 305  Q
    ||||||||| |||||||||||||| | | |||||||  ||| ||||| |||||| ||||||||||||||||| || | |||||| ||| ||| ||||| |    
T  16143430 gttggaaatcaagtgtgagtgataatgttccacatctgctagaaatggagcaaatgttggatatataagagacgagacccataagctcattgccttaaag 16143529  T
Q  306 ttttg 310  Q
    |||||    
T  16143530 ttttg 16143534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 53595952 - 53596056
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagaga-gaaatccataaactcgttgtcttaagg 305  Q
    ||||||||| ||||| ||||||| || |||||||| ||||| ||||  || ||| ||||||||||||||||| || | |||||||| ||||  |||||||    
T  53595952 gttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaagg 53596051  T
Q  306 ttttg 310  Q
    |||||    
T  53596052 ttttg 53596056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 53596267 - 53596371
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagaga-gaaatccataaactcgttgtcttaagg 305  Q
    ||||||||| ||||| ||||||| || |||||||| ||||| ||||  || ||| ||||||||||||||||| || | |||||||| ||||  |||||||    
T  53596267 gttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaagg 53596366  T
Q  306 ttttg 310  Q
    |||||    
T  53596367 ttttg 53596371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 43978736 - 43978669
Alignment:
Q  213 aaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    |||| ||||||||||||| || ||||||||||||||  |||| || |||| |||||||||||||||||    
T  43978736 aaatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacattggatatataagagag 43978669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 40195983 - 40195914
Alignment:
Q  211 ggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    |||||| ||||||||||||| || |  |||||||||||  |||| || ||||||||||||||||||||||    
T  40195983 ggaaatcaagtgtgagtgattatgtttcacatcgactaggaatggaggaaacgttggatatataagagag 40195914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 23162181 - 23162249
Alignment:
Q  212 gaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||| ||||||||||||| || ||||||||||| ||  |||| || |||||||||| |||||||||||    
T  23162181 gaaataaagtgtgagtgattatgtcccacatcgattaggaatggaggaaacgttggacatataagagag 23162249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 48127981 - 48127909
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||| || |||||||||| || || |||||| ||||||||||  | ||||||| ||||||||||||||    
T  48127981 gttggaaatcaaatgtgagtgattatgtcacacatcaactataaatggtggaaacgtttgatatataagagag 48127909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 7301466 - 7301397
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataaga 276  Q
    |||| |||||||||||||||||| || |||||||||||||| ||||| || |||||||||||||||||||    
T  7301466 gttgaaaattaagtgtgagtgattatgtcccacatcgactagaaatggaggaaacgttggatatataaga 7301397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 11637887 - 11637783
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagaga-gaaatccataaactcgttgtcttaagg 305  Q
    |||| |||| |||||||||||||| | ||| |||||||||| || |||||||||| ||| |||||||||||| || | |||||||| | ||||||||||     
T  11637887 gttgaaaatcaagtgtgagtgataatgtccaacatcgactagaagtgaagcaaacattgaatatataagagaggatacccataaacccattgtcttaaga 11637788  T
Q  306 ttttg 310  Q
    |||||    
T  11637787 ttttg 11637783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 7301750 - 7301678
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||| |||||||||| || || |||||||||||||| ||||| || ||| ||| ||||||||| ||||    
T  7301750 gttggaaatcaagtgtgagtaattatgtcccacatcgactaaaaatggagaaaatgttagatatataaaagag 7301678  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 5981607 - 5981536
Alignment:
Q  209 ttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    |||||||| ||||||||||||| || ||||||||||||||  |||| || ||||||||||||||||||||||    
T  5981607 ttggaaatcaagtgtgagtgattatgtcccacatcgactaggaatggagaaaacgttggatatataagagag 5981536  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 2954381 - 2954319
Alignment:
Q  218 aagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||||||| || ||||||||||||||  |||| || ||| ||||||||||||||||||    
T  2954381 aagtgtgagtgattatttcccacatcgactaggaatggagaaaatgttggatatataagagag 2954319  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 3670935 - 3670894
Alignment:
Q  237 cacatcgactataaatgaagcaaacgttggatatataagaga 278  Q
    ||||||||||| ||||| || |||||||||||||||||||||    
T  3670935 cacatcgactagaaatggaggaaacgttggatatataagaga 3670894  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 2954664 - 2954600
Alignment:
Q  218 aagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaa 281  Q
    ||||||||||||| || |||||||| |||||  |||| || ||| ||||||||||||||||||||    
T  2954664 aagtgtgagtgattatgtcccacatagactaggaatggagaaaatgttggatatataagagagaa 2954600  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 922437 - 922482
Alignment:
Q  234 tcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||    
T  922437 tcccacatcgactagaaatgaagcaaacgttagatatagaagagag 922482  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 11307741 - 11307673
Alignment:
Q  212 gaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    |||||||||||||||||||  | || ||||||||||||||||| || ||| ||||||||||| ||||||    
T  11307741 gaaattaagtgtgagtgattgtgtctcacatcgactataaatggaggaaatgttggatatatgagagag 11307673  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 34946570 - 34946467
Alignment:
Q  208 gttggaaattaagtgtgagtgata-tatcccacatcgactataaatgaagcaaacgttggatatataagag-agaaatccataaactcgttgtcttaagg 305  Q
    ||||||||| ||||||| |||||| | || ||||||||||| ||||| |||||||||||||||| |||||| ||| | ||||||||  | ||||||| ||    
T  34946570 gttggaaatcaagtgtg-gtgataatgtctcacatcgactagaaatggagcaaacgttggatatttaagagaagagacccataaacctgatgtcttaggg 34946472  T
Q  306 ttttg 310  Q
    |||||    
T  34946471 ttttg 34946467  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 10396123 - 10396226
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaa-atccataaactcgttgtcttaagg 305  Q
    ||||||||| ||||||||||||| || || ||||||||| | ||||| || ||| |||| ||||||||||||||| | |||||||| | ||| |||| ||    
T  10396123 gttggaaatcaagtgtgagtgattatgtctcacatcgacaagaaatggaggaaatgttgaatatataagagagaagacccataaacccattgccttaggg 10396222  T
Q  306 tttt 309  Q
    ||||    
T  10396223 tttt 10396226  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 47680618 - 47680685
Alignment:
Q  213 aaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    |||||||||||||||||| || ||||||||||| |||||||| || |||| ||| ||||||| |||||    
T  47680618 aaattaagtgtgagtgattatgtcccacatcgattataaatggaggaaacattgaatatatatgagag 47680685  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 11197248 - 11197290
Alignment:
Q  237 cacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||||| ||||| || ||||||||||||||||||||||    
T  11197248 cacatcgactagaaatggaggaaacgttggatatataagagag 11197290  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 10396408 - 10396480
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||||||| ||||||||||||| || || || || ||||| ||||| || ||| ||||||||||||||||||    
T  10396408 gttggaaatcaagtgtgagtgattatgtctcatattgactagaaatggaggaaatgttggatatataagagag 10396480  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 34946277 - 34946209
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataag 275  Q
    ||||||||| ||||||||||||| || ||||||||| |||  ||||| ||||||||||| |||| ||||    
T  34946277 gttggaaatcaagtgtgagtgataatgtcccacatcaacttgaaatggagcaaacgttgaatatttaag 34946209  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 53468163 - 53468060
Alignment:
Q  208 gttggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatat-aagagagaaatccataaactcgttgtcttaagg 305  Q
    ||||||||| ||||||||||||| || || |||||||| || ||||| |||||| |||| |||||| ||||| || | |||||||||| |||| |||||     
T  53468163 gttggaaatcaagtgtgagtgataatgtctcacatcgattagaaatggagcaaatgttgaatatataaagag-gagacccataaactcattgttttaagc 53468065  T
Q  306 ttttg 310  Q
    |||||    
T  53468064 ttttg 53468060  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 27686685 - 27686615
Alignment:
Q  213 aaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagagaaa 282  Q
    |||||||||||||||||| || | ||||||||||||  |||| || |||| || |||||||||||||||||    
T  27686685 aaattaagtgtgagtgattatgttccacatcgactaggaatggaggaaacattagatatataagagagaaa 27686615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 4392355 - 4392286
Alignment:
Q  211 ggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    |||||| ||||||||||||| || || |||||||||||| |||| || |||| |||||||||||| ||||    
T  4392355 ggaaatcaagtgtgagtgattatgtctcacatcgactatgaatggaggaaacattggatatataacagag 4392286  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 15327851 - 15327920
Alignment:
Q  211 ggaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    |||||| ||||||||||||| || || |||||||||||  |||| || ||||||| ||||||||||||||    
T  15327851 ggaaatcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttagatatataagagag 15327920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 12466279 - 12466347
Alignment:
Q  212 gaaattaagtgtgagtgat-atatcccacatcgactataaatgaagcaaacgttggatatataagagag 279  Q
    ||||| |||||| |||||| || ||||||||| |||| ||||| || |||||||||||||||| |||||    
T  12466279 gaaatcaagtgtaagtgattatgtcccacatcaactagaaatggagaaaacgttggatatatacgagag 12466347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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