View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18845_low_11 (Length: 334)

Name: NF18845_low_11
Description: NF18845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18845_low_11
NF18845_low_11
[»] chr5 (2 HSPs)
chr5 (3-322)||(33566541-33566861)
chr5 (31-136)||(25598148-25598253)
[»] chr4 (5 HSPs)
chr4 (18-173)||(15041560-15041714)
chr4 (18-173)||(15112710-15112864)
chr4 (18-172)||(15039832-15039985)
chr4 (18-172)||(15114439-15114592)
chr4 (11-172)||(16003536-16003695)
[»] chr7 (3 HSPs)
chr7 (54-172)||(20186184-20186302)
chr7 (11-172)||(10868020-10868181)
chr7 (55-173)||(10866346-10866464)
[»] chr3 (2 HSPs)
chr3 (3-168)||(19844661-19844825)
chr3 (79-173)||(8584497-8584591)
[»] chr1 (1 HSPs)
chr1 (13-166)||(17309720-17309874)
[»] chr8 (1 HSPs)
chr8 (27-143)||(22692450-22692565)
[»] chr6 (3 HSPs)
chr6 (85-177)||(34245051-34245143)
chr6 (99-173)||(13213936-13214010)
chr6 (56-129)||(30579957-30580030)
[»] scaffold0275 (1 HSPs)
scaffold0275 (3-165)||(3846-3989)
[»] scaffold0590 (2 HSPs)
scaffold0590 (91-165)||(55-129)
scaffold0590 (18-68)||(1-50)
[»] chr2 (1 HSPs)
chr2 (71-158)||(23748594-23748681)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 3 - 322
Target Start/End: Complemental strand, 33566861 - 33566541
Alignment:
Q  3 ggttaagtgtaatttaggtctataaaagaccatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33566861 ggttaagtgtaatttaggtctataaaagaccatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctat 33566762  T
Q  103 atttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgatatat-tggagtttgattagaagggattatgt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  33566761 atttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgatatatatggagtttgattagaggggattatgt 33566662  T
Q  202 atagtcaagttgaattttgttgctataatacagaagcaaatgcaannnnnnnngtccattcaaaatacaaaaataattagcaggaggaagctcaagtcat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||||    
T  33566661 atagtcaagttgaattttgttgctataatacagaagcaaatgcaattttgtttgtccattcaaaatacaaaaataattagcaggaggaagctcaaatcat 33566562  T
Q  302 cccaaaaacttgtaagagaat 322  Q
    |||||||||||||||||||||    
T  33566561 cccaaaaacttgtaagagaat 33566541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 25598253 - 25598148
Alignment:
Q  31 accatccatgtactcattactctttaatctttttcaattcaattcaatatga---attctaatggttttccctatatttcttcttatcaatcatacttct 127  Q
    |||||||||||||||||||||    |||| |||||||| ||||| |||||||   |||||||||||||||||||| ||||| | ||||||||||||||||    
T  25598253 accatccatgtactcattactg---aatcattttcaatacaattaaatatgatgaattctaatggttttccctatgtttctacctatcaatcatacttct 25598157  T
Q  128 cctatgaag 136  Q
    |||||||||    
T  25598156 cctatgaag 25598148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 15041714 - 15041560
Alignment:
Q  18 aggtctataaaag-accatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctatatttcttcttatca 116  Q
    ||||||||||||| |||| |||||||||||||  | |  ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||    
T  15041714 aggtctataaaaggaccaaccatgtactcattcatgt--aatctttttcaatacaattcaatatgaattctaagggttttccctatgtttcttcctatca 15041617  T
Q  117 atcatacttctcctatgaagctaatctacatctctttgatccttttatttctgatat 173  Q
    |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  15041616 atcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgatat 15041560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 15112710 - 15112864
Alignment:
Q  18 aggtctataaaag-accatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctatatttcttcttatca 116  Q
    ||||||||||||| |||| |||||||||||||  | |  ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||    
T  15112710 aggtctataaaaggaccaaccatgtactcattcatgt--aatctttttcaatacaattcaatatgaattctaagggttttccctatgtttcttcctatca 15112807  T
Q  117 atcatacttctcctatgaagctaatctacatctctttgatccttttatttctgatat 173  Q
    |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  15112808 atcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgatat 15112864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 15039985 - 15039832
Alignment:
Q  18 aggtctataaaag-accatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctatatttcttcttatca 116  Q
    ||||||||||||| |||| |||||||||||||  | |  ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||    
T  15039985 aggtctataaaaggaccaaccatgtactcattcatgt--aatctttttcaatacaattcactatgaattctaagggttttccctatatttcttcctatca 15039888  T
Q  117 atcatacttctcctatgaagctaatctacatctctttgatccttttatttctgata 172  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  15039887 atcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15039832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 15114439 - 15114592
Alignment:
Q  18 aggtctataaaag-accatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctatatttcttcttatca 116  Q
    ||||||||||||| |||| |||||||||||||  | |  ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||    
T  15114439 aggtctataaaaggaccaaccatgtactcattcatgt--aatctttttcaatacaattcactatgaattctaagggttttccctatatttcttcctatca 15114536  T
Q  117 atcatacttctcctatgaagctaatctacatctctttgatccttttatttctgata 172  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  15114537 atcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15114592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 16003536 - 16003695
Alignment:
Q  11 gtaatttaggtctataaaag-accatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctatatttctt 109  Q
    |||||| ||||||||||||| |||| |||| ||||||||  ||   ||||||||| ||| ||||| |  |||||||||||  ||||| ||||| ||||||    
T  16003536 gtaattgaggtctataaaaggaccaaccatatactcattcatc---aatctttttaaatacaatttataatgaattctaagagtttttcctatgtttctt 16003632  T
Q  110 cttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgata 172  Q
    | ||||||| |||||| |||||||||| ||||||  |||||||||||||| ||||||||||||    
T  16003633 cctatcaattatacttttcctatgaagttaatctcaatctctttgatcctattatttctgata 16003695  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 20186184 - 20186302
Alignment:
Q  54 ttaatctttttcaattcaattcaatatgaattctaatggttttccctatatttcttcttatcaatcatacttctcctatgaagctaatctacatctcttt 153  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||  |||| ||     
T  20186184 ttaatctttttcaatacaattcaatatgaattctaagggttttccctatgtttcttcctatcaatcatacttctcctatgaggctaatctcaatcttttc 20186283  T
Q  154 gatccttttatttctgata 172  Q
    |||||| ||||||||||||    
T  20186284 gatcctattatttctgata 20186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 10868020 - 10868181
Alignment:
Q  11 gtaatttaggtctataaaag-accatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggtttt-ccctatatttct 108  Q
    |||||| ||||||||||||| |||| |||||||||||||  | |  ||||||||||||| |||||||||||||||||||| |||||| |||||| |||||    
T  10868020 gtaattgaggtctataaaaggaccaaccatgtactcattcatat--aatctttttcaatacaattcaatatgaattctaagggtttttccctatgtttct 10868117  T
Q  109 tcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgata 172  Q
    || ||||||||||||||||| | ||||| ||||||  |||||||||||||| ||||||||||||    
T  10868118 tcctatcaatcatacttctcttctgaagttaatctcaatctctttgatcctattatttctgata 10868181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 10866346 - 10866464
Alignment:
Q  55 taatctttttcaattcaattcaatatgaattctaatggttttccctatatttcttcttatcaatcatacttctcctatgaagctaatctacatctctttg 154  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||||  ||||||| ||||||  |||||||||    
T  10866346 taatctttttcaatacaatttaatatgaattctaagggttttccctatgtttcttcatatcaatcatacttcttttatgaagttaatctcaatctctttg 10866445  T
Q  155 atccttttatttctgatat 173  Q
    ||||| |||||||||||||    
T  10866446 atcctattatttctgatat 10866464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 19844825 - 19844661
Alignment:
Q  3 ggttaagtgtaatttaggtctataaaagaccatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctat 102  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| |  ||||||||||||| |||||||||||  ||||||| |||||||  |||    
T  19844825 ggttaagtgtaattgaggtctataaaagaccatctatgtactcattactatc-aatctttttcaatacaattcaatattcattctaagggttttcagtat 19844727  T
Q  103 atttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttct 168  Q
     ||||||| ||||| |||||||||| ||||||| |||||||  |||| || |||||| ||||||||    
T  19844726 gtttcttcctatcactcatacttctgctatgaaactaatctcaatctattcgatcctattatttct 19844661  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 8584497 - 8584591
Alignment:
Q  79 atgaattctaatggttttccctatatttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgatat 173  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||| || ||||||||||||||  |||| || ||| || |||||||||||||    
T  8584497 atgaattctaagggttttccctatgtttcttcctatcaatcatacttatcttatgaagctaatctcaatctattcgatactattatttctgatat 8584591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 17309874 - 17309720
Alignment:
Q  13 aatttaggtctataaa--agaccatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggtttt--ccctatatttct 108  Q
    |||| |||||||||||  ||||||||||||||||||||| |   |||||||||||||| |||||||||||||||||||| ||||||  | |||| |||||    
T  17309874 aattgaggtctataaataagaccatccatgtactcattaat---taatctttttcaatacaattcaatatgaattctaagggttttttctctatgtttct 17309778  T
Q  109 tcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttattt 166  Q
    |||||| |||||||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  17309777 tcttatgaatcatacttctcctatgaagctaatcttcatttcttcgatcctattattt 17309720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 22692450 - 22692565
Alignment:
Q  27 aaagaccatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctatatttcttcttatcaatcatacttc 126  Q
    |||||||||| |||||||||||||| |  ||||||||||||| |||||||||||||||||||| ||||||| || | ||||||| |||||||||||||||    
T  22692450 aaagaccatctatgtactcattactata-aatctttttcaatacaattcaatatgaattctaagggttttcactgtgtttcttcctatcaatcatacttc 22692548  T
Q  127 tcctatgaagctaatct 143  Q
    |||||| ||||||||||    
T  22692549 tcctataaagctaatct 22692565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 34245051 - 34245143
Alignment:
Q  85 tctaatggttttccctatatttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgatatattg 177  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| || |||||| |||||||||||||||||    
T  34245051 tctaagggttttccctatgtttcttcctatcaatcatacttctcctataaagctaatctacatctattcgatcctattatttctgatatattg 34245143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 13214010 - 13213936
Alignment:
Q  99 ctatatttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgatat 173  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| |||||| ||||||    
T  13214010 ctatgtttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttgtgatat 13213936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 30580030 - 30579957
Alignment:
Q  56 aatctttttcaattcaattcaatatgaattctaatggttttccctatatttcttcttatcaatcatacttctcc 129  Q
    ||||||||||| | |||||||  ||||||||||| ||||||| |||| ||||||| | |||||||| |||||||    
T  30580030 aatctttttcattacaattcataatgaattctaagggttttctctatgtttcttcctctcaatcatgcttctcc 30579957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 3989 - 3846
Alignment:
Q  3 ggttaagtgtaatttaggtctataaaagaccatccatgtactcattactctttaatctttttcaattcaattcaatatgaattctaatggttttccctat 102  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||   ||               | ||||||||||||    
T  3989 ggttaagtgtaattgaggtctataaaagaccatccatgtactcattactc-ttaatctttttcaat---at---------------agggttttccctat 3909  T
Q  103 atttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatt 165  Q
     ||||||  |||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  3908 gtttcttactatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 3846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 55 - 129
Alignment:
Q  91 ggttttccctatatttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatt 165  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  55 ggttttccctatgtttcttactatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 129  T

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Target: scaffold0590; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 1 - 50
Alignment:
Q  18 aggtctataaaagaccatccatgtactcattactctttaatctttttcaat 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1 aggtctataaaagaccatccatgtactcattactc-ttaatctttttcaat 50  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 23748594 - 23748681
Alignment:
Q  71 aattcaatatgaattctaatggttttccctatatttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatcc 158  Q
    ||||||||||||||||||  |||||| ||||| ||||  | |||||| | ||||||||||||| |||| |||| |||||||| |||||    
T  23748594 aattcaatatgaattctacgggtttttcctatgtttcaacctatcaagcctacttctcctatggagctcatcttcatctcttcgatcc 23748681  T

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